Wall clock time and date at job start Tue Mar 31 2020 02:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08999 * 109.99758 * 2 1 4 4 C 1.54320 * 109.88578 * 121.10053 * 2 1 3 5 5 C 1.55158 * 102.94414 * 141.60898 * 4 2 1 6 6 H 1.09003 * 111.00321 * 206.38360 * 5 4 2 7 7 N 1.46497 * 111.00401 * 82.57532 * 5 4 2 8 8 C 1.36932 * 120.00214 * 154.99929 * 7 5 4 9 9 H 1.08000 * 120.00143 * 359.97438 * 8 7 5 10 10 C 1.38810 * 120.00254 * 180.02562 * 8 7 5 11 11 N 1.31624 * 119.99791 * 359.97438 * 10 8 7 12 12 Si 1.86802 * 120.00311 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.46899 * 359.97438 * 12 10 8 14 14 H 1.48503 * 109.47011 * 119.99904 * 12 10 8 15 15 H 1.48503 * 109.47162 * 239.99788 * 12 10 8 16 16 C 1.55130 * 101.48452 * 324.33534 * 5 4 2 17 17 N 1.47027 * 109.88070 * 238.90821 * 2 1 3 18 18 C 1.34780 * 125.64792 * 61.60981 * 17 2 1 19 19 O 1.21282 * 119.99926 * 359.97438 * 18 17 2 20 20 C 1.50697 * 119.99655 * 179.97438 * 18 17 2 21 21 C 1.53004 * 109.46862 * 179.97438 * 20 18 17 22 22 C 1.54894 * 110.48128 * 68.24509 * 21 20 18 23 23 C 1.55238 * 102.58338 * 156.67574 * 22 21 20 24 24 C 1.54266 * 104.23333 * 322.08174 * 23 22 21 25 25 C 1.53869 * 106.59800 * 23.61579 * 24 23 22 26 26 H 1.09009 * 109.47102 * 179.63540 * 1 2 3 27 27 H 1.08999 * 109.47426 * 299.63369 * 1 2 3 28 28 H 1.08999 * 109.47534 * 59.64057 * 1 2 3 29 29 H 1.08995 * 110.72271 * 259.97425 * 4 2 1 30 30 H 1.09008 * 110.71933 * 23.24925 * 4 2 1 31 31 H 0.97001 * 120.00018 * 334.99576 * 7 5 4 32 32 H 0.97003 * 119.99551 * 179.97438 * 11 10 8 33 33 H 1.09006 * 110.49367 * 278.44784 * 16 5 4 34 34 H 1.09002 * 110.33949 * 156.06588 * 16 5 4 35 35 H 1.09002 * 109.47212 * 60.00426 * 20 18 17 36 36 H 1.08991 * 109.47390 * 299.99580 * 20 18 17 37 37 H 1.09002 * 110.43542 * 305.70357 * 21 20 18 38 38 H 1.08996 * 110.75388 * 275.05927 * 22 21 20 39 39 H 1.08993 * 110.76071 * 38.44153 * 22 21 20 40 40 H 1.09005 * 110.46917 * 203.39204 * 23 22 21 41 41 H 1.09006 * 110.46947 * 80.77225 * 23 22 21 42 42 H 1.08999 * 110.03060 * 264.32313 * 24 23 22 43 43 H 1.09006 * 110.06829 * 142.91691 * 24 23 22 44 44 H 1.09001 * 110.02983 * 240.71432 * 25 24 23 45 45 H 1.08996 * 110.07773 * 119.30576 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0548 -0.7496 1.2426 5 6 3.2876 -1.5143 0.6922 6 1 3.4856 -2.4108 1.2798 7 7 4.4674 -0.6469 0.6492 8 6 5.7217 -1.1940 0.6985 9 1 5.8412 -2.2650 0.7694 10 6 6.8395 -0.3721 0.6583 11 7 6.6939 0.9332 0.5724 12 14 8.5507 -1.1185 0.7248 13 1 8.4426 -2.5966 0.8186 14 1 9.2981 -0.7534 -0.5053 15 1 9.2715 -0.5989 1.9146 16 6 2.8098 -1.8824 -0.7371 17 7 2.0299 -0.7140 -1.1840 18 6 1.8073 -0.3618 -2.4658 19 8 1.1428 0.6209 -2.7180 20 6 2.3841 -1.1892 -3.5855 21 6 1.9849 -0.5771 -4.9298 22 6 2.6900 0.7867 -5.1350 23 6 2.6813 0.9429 -6.6795 24 6 2.9398 -0.4837 -7.2064 25 6 2.4970 -1.4501 -6.0939 26 1 -0.3634 -1.0277 -0.0065 27 1 -0.3634 0.5081 0.8932 28 1 -0.3634 0.5194 -0.8867 29 1 2.3529 -0.0462 2.0200 30 1 1.3051 -1.4461 1.6181 31 1 4.3601 0.3151 0.5859 32 1 7.4751 1.5076 0.5447 33 1 2.1801 -2.7718 -0.7117 34 1 3.6655 -2.0411 -1.3934 35 1 1.9986 -2.2067 -3.5213 36 1 3.4707 -1.2063 -3.5021 37 1 0.9028 -0.4598 -4.9882 38 1 2.1251 1.5889 -4.6600 39 1 3.7112 0.7547 -4.7556 40 1 3.4758 1.6174 -6.9989 41 1 1.7116 1.3057 -7.0205 42 1 4.0009 -0.6174 -7.4168 43 1 2.3552 -0.6607 -8.1092 44 1 3.3433 -2.0529 -5.7644 45 1 1.6973 -2.0962 -6.4560 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987864871.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:01:23 Heat of formation + Delta-G solvation = -64.527212 kcal Electronic energy + Delta-G solvation = -22974.987130 eV Core-core repulsion = 19797.666384 eV Total energy + Delta-G solvation = -3177.320746 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.26697 -39.41262 -38.17331 -35.77190 -33.41536 -33.08646 -31.78126 -30.10434 -29.52172 -26.93097 -26.62145 -25.68301 -23.21724 -21.59827 -21.32799 -20.60922 -19.74303 -19.25083 -17.98887 -17.39266 -16.82832 -16.43941 -15.90480 -15.78197 -15.53458 -15.18661 -14.82684 -14.63250 -14.29416 -14.14273 -13.87129 -13.48975 -13.21479 -13.16322 -12.89964 -12.84850 -12.72171 -12.29483 -12.22612 -12.14631 -12.03382 -11.95142 -11.84973 -11.65278 -11.62921 -11.50387 -11.46403 -11.23079 -11.03311 -10.61617 -9.58794 -8.96749 -7.93413 -5.22493 1.48837 1.49223 1.59029 1.73493 2.15819 2.56835 3.38392 3.49771 3.69350 3.73509 3.82169 3.88452 3.96318 4.06854 4.15790 4.33298 4.39239 4.42329 4.49227 4.57722 4.58453 4.70030 4.71464 4.77895 4.81489 4.83730 4.88343 4.92159 4.96194 5.09315 5.11253 5.12831 5.19449 5.23565 5.25384 5.33693 5.37790 5.51400 5.53182 5.55936 5.57862 6.27625 6.70313 7.28584 7.34017 8.09168 8.31313 9.30408 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.012845 B = 0.005538 C = 0.004276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.232494 B = 5055.158729 C = 6546.977778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.132 3.868 3 H 0.034 0.966 4 C -0.124 4.124 5 C 0.155 3.845 6 H 0.089 0.911 7 N -0.726 5.726 8 C -0.233 4.233 9 H 0.087 0.913 10 C -0.077 4.077 11 N -0.973 5.973 12 Si 0.969 3.031 13 H -0.259 1.259 14 H -0.300 1.300 15 H -0.298 1.298 16 C 0.079 3.921 17 N -0.605 5.605 18 C 0.518 3.482 19 O -0.583 6.583 20 C -0.123 4.123 21 C -0.071 4.071 22 C -0.122 4.122 23 C -0.123 4.123 24 C -0.121 4.121 25 C -0.116 4.116 26 H 0.070 0.930 27 H 0.078 0.922 28 H 0.042 0.958 29 H 0.071 0.929 30 H 0.112 0.888 31 H 0.368 0.632 32 H 0.248 0.752 33 H 0.095 0.905 34 H 0.064 0.936 35 H 0.114 0.886 36 H 0.086 0.914 37 H 0.071 0.929 38 H 0.047 0.953 39 H 0.045 0.955 40 H 0.064 0.936 41 H 0.068 0.932 42 H 0.065 0.935 43 H 0.077 0.923 44 H 0.069 0.931 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.915 -8.601 -8.981 17.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.029 3.971 3 H 0.052 0.948 4 C -0.162 4.162 5 C 0.045 3.955 6 H 0.107 0.893 7 N -0.364 5.364 8 C -0.365 4.365 9 H 0.105 0.895 10 C -0.269 4.269 11 N -0.624 5.624 12 Si 0.799 3.201 13 H -0.182 1.182 14 H -0.228 1.228 15 H -0.226 1.226 16 C -0.047 4.047 17 N -0.338 5.338 18 C 0.309 3.691 19 O -0.464 6.464 20 C -0.162 4.162 21 C -0.090 4.090 22 C -0.160 4.160 23 C -0.160 4.160 24 C -0.159 4.159 25 C -0.153 4.153 26 H 0.089 0.911 27 H 0.097 0.903 28 H 0.061 0.939 29 H 0.090 0.910 30 H 0.130 0.870 31 H 0.200 0.800 32 H 0.057 0.943 33 H 0.113 0.887 34 H 0.082 0.918 35 H 0.132 0.868 36 H 0.105 0.895 37 H 0.089 0.911 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.083 0.917 41 H 0.086 0.914 42 H 0.084 0.916 43 H 0.096 0.904 44 H 0.088 0.912 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -12.126 -8.233 -9.159 17.283 hybrid contribution 1.289 0.828 0.206 1.546 sum -10.837 -7.406 -8.953 15.888 Atomic orbital electron populations 1.21999 0.93476 1.02669 1.02178 1.21488 0.95054 0.95035 0.85519 0.94794 1.23002 0.97775 0.99991 0.95475 1.21707 0.86134 0.94374 0.93287 0.89294 1.42547 1.01191 1.05317 1.87374 1.19743 0.84183 0.92580 1.40006 0.89494 1.25546 1.01637 0.95684 1.04008 1.69855 1.29234 1.03646 1.59703 0.85132 0.80356 0.78424 0.76217 1.18242 1.22799 1.22572 1.23317 0.94650 0.87862 0.98847 1.48613 1.51733 1.28681 1.04773 1.20895 0.79793 0.85214 0.83226 1.90603 1.42484 1.29374 1.83936 1.21734 1.01894 1.00373 0.92203 1.21703 0.99986 0.94717 0.92548 1.22578 0.99053 0.97583 0.96802 1.22412 1.01678 0.97802 0.94112 1.22121 1.01606 0.93756 0.98379 1.22199 1.01345 0.97615 0.94189 0.91095 0.90313 0.93899 0.90994 0.86987 0.80040 0.94349 0.88680 0.91797 0.86762 0.89541 0.91052 0.93367 0.93568 0.91717 0.91365 0.91614 0.90380 0.91202 0.90145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.91 9.10 71.98 0.66 -3.25 16 2 C 0.13 4.31 3.45 45.34 0.16 4.46 16 3 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 4 C -0.12 -3.58 6.07 31.78 0.19 -3.38 16 5 C 0.16 5.31 3.72 46.46 0.17 5.49 16 6 H 0.09 2.80 8.09 -2.39 -0.02 2.78 16 7 N -0.73 -34.31 5.24 -316.02 -1.66 -35.97 16 8 C -0.23 -12.11 9.96 84.03 0.84 -11.28 16 9 H 0.09 4.19 7.83 -2.91 -0.02 4.17 16 10 C -0.08 -4.28 5.50 84.86 0.47 -3.82 16 11 N -0.97 -59.55 13.06 21.65 0.28 -59.27 16 12 Si 0.97 44.91 29.55 68.60 2.03 46.94 16 13 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 14 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 15 H -0.30 -14.02 7.11 99.48 0.71 -13.32 16 16 C 0.08 2.37 6.41 86.93 0.56 2.93 16 17 N -0.61 -20.15 3.06 -787.63 -2.41 -22.56 16 18 C 0.52 18.06 7.44 87.66 0.65 18.72 16 19 O -0.58 -23.72 13.64 -3.04 -0.04 -23.76 16 20 C -0.12 -3.35 4.06 29.85 0.12 -3.23 16 21 C -0.07 -1.82 2.45 -9.72 -0.02 -1.85 16 22 C -0.12 -3.63 5.72 32.01 0.18 -3.44 16 23 C -0.12 -2.80 6.84 31.79 0.22 -2.59 16 24 C -0.12 -2.29 6.80 31.32 0.21 -2.08 16 25 C -0.12 -2.27 6.37 31.32 0.20 -2.07 16 26 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 27 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.04 1.35 6.88 -2.39 -0.02 1.34 16 29 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 30 H 0.11 2.41 7.85 -2.38 -0.02 2.39 16 31 H 0.37 19.80 7.86 -92.71 -0.73 19.07 16 32 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 33 H 0.10 2.16 8.14 -2.38 -0.02 2.14 16 34 H 0.06 2.14 7.48 -2.39 -0.02 2.12 16 35 H 0.11 2.45 8.14 -2.39 -0.02 2.43 16 36 H 0.09 2.54 7.77 -2.39 -0.02 2.52 16 37 H 0.07 1.95 7.96 -2.39 -0.02 1.93 16 38 H 0.05 1.68 7.16 -2.39 -0.02 1.66 16 39 H 0.05 1.50 8.00 -2.39 -0.02 1.48 16 40 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 41 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 42 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 44 H 0.07 1.32 7.84 -2.39 -0.02 1.30 16 45 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -67.22 352.37 3.02 -64.21 By element: Atomic # 1 Polarization: 35.59 SS G_CDS: 0.22 Total: 35.81 kcal Atomic # 6 Polarization: -10.00 SS G_CDS: 4.60 Total: -5.40 kcal Atomic # 7 Polarization: -114.01 SS G_CDS: -3.79 Total: -117.80 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: -0.04 Total: -23.76 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -67.22 3.02 -64.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987864871.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.322 kcal (2) G-P(sol) polarization free energy of solvation -67.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds