Wall clock time and date at job start Tue Mar 31 2020 02:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.87425 * 2 1 4 4 C 1.54322 * 109.87931 * 121.00854 * 2 1 3 5 5 C 1.55162 * 102.93936 * 141.61085 * 4 2 1 6 6 H 1.09000 * 111.00538 * 206.38826 * 5 4 2 7 7 N 1.46500 * 111.00465 * 82.57288 * 5 4 2 8 8 C 1.36939 * 119.99667 * 154.99873 * 7 5 4 9 9 H 1.07997 * 120.00199 * 0.02562 * 8 7 5 10 10 C 1.38817 * 119.99528 * 179.97438 * 8 7 5 11 11 N 1.31620 * 120.00124 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 119.99801 * 180.02562 * 10 8 7 13 13 H 1.48494 * 109.46911 * 90.00390 * 12 10 8 14 14 H 1.48502 * 109.47316 * 210.00577 * 12 10 8 15 15 H 1.48498 * 109.47191 * 330.00671 * 12 10 8 16 16 C 1.54911 * 101.58138 * 324.49911 * 5 4 2 17 17 N 1.47018 * 109.88407 * 238.82115 * 2 1 3 18 18 C 1.34779 * 125.65076 * 61.61659 * 17 2 1 19 19 O 1.21281 * 119.99847 * 355.15916 * 18 17 2 20 20 C 1.50692 * 119.99903 * 175.15483 * 18 17 2 21 21 C 1.53004 * 109.47371 * 266.67789 * 20 18 17 22 22 C 1.53000 * 109.47296 * 180.02562 * 21 20 18 23 23 C 1.52998 * 109.46912 * 60.00651 * 22 21 20 24 24 C 1.53005 * 109.46806 * 299.99437 * 23 22 21 25 25 C 1.53000 * 109.46925 * 60.00572 * 24 23 22 26 26 H 1.09000 * 109.46599 * 300.44476 * 1 2 3 27 27 H 1.09004 * 109.46794 * 60.43950 * 1 2 3 28 28 H 1.08995 * 109.47370 * 180.44376 * 1 2 3 29 29 H 1.08994 * 110.72400 * 259.97092 * 4 2 1 30 30 H 1.09002 * 110.72064 * 23.07298 * 4 2 1 31 31 H 0.96997 * 120.00054 * 335.00111 * 7 5 4 32 32 H 0.97001 * 119.99712 * 179.97438 * 11 10 8 33 33 H 1.09001 * 110.36406 * 155.84933 * 16 5 4 34 34 H 1.09004 * 110.36622 * 278.06092 * 16 5 4 35 35 H 1.08995 * 109.47826 * 26.68227 * 20 18 17 36 36 H 1.08998 * 109.47492 * 300.00856 * 21 20 18 37 37 H 1.09001 * 109.46593 * 60.00390 * 21 20 18 38 38 H 1.09001 * 109.46910 * 300.00214 * 22 21 20 39 39 H 1.09004 * 109.46833 * 180.02562 * 22 21 20 40 40 H 1.09006 * 109.47129 * 180.02562 * 23 22 21 41 41 H 1.08990 * 109.47561 * 59.99594 * 23 22 21 42 42 H 1.09006 * 109.47476 * 300.00238 * 24 23 22 43 43 H 1.09001 * 109.46790 * 180.02562 * 24 23 22 44 44 H 1.09004 * 109.46833 * 179.97438 * 25 24 23 45 45 H 1.09001 * 109.46910 * 59.99800 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0548 -0.7476 1.2439 5 6 3.2876 -1.5132 0.6947 6 1 3.4856 -2.4088 1.2836 7 7 4.4674 -0.6459 0.6504 8 6 5.7217 -1.1931 0.7005 9 1 5.8412 -2.2640 0.7723 10 6 6.8396 -0.3712 0.6580 11 7 6.6940 0.9339 0.5700 12 14 8.5507 -1.1177 0.7258 13 1 9.0190 -1.4079 -0.6532 14 1 9.4830 -0.1607 1.3741 15 1 8.5103 -2.3779 1.5103 16 6 2.8145 -1.8805 -0.7340 17 7 2.0301 -0.7157 -1.1828 18 6 1.8077 -0.3655 -2.4652 19 8 1.0723 0.5644 -2.7210 20 6 2.4727 -1.1293 -3.5810 21 6 3.7825 -0.4368 -3.9632 22 6 4.4574 -1.2120 -5.0966 23 6 3.5282 -1.2514 -6.3114 24 6 2.2184 -1.9439 -5.9293 25 6 1.5435 -1.1688 -4.7959 26 1 -0.3632 0.5207 0.8860 27 1 -0.3633 0.5070 -0.8940 28 1 -0.3634 -1.0276 0.0080 29 1 2.3529 -0.0430 2.0201 30 1 1.3039 -1.4412 1.6222 31 1 4.3601 0.3160 0.5856 32 1 7.4752 1.5082 0.5407 33 1 3.6717 -2.0359 -1.3892 34 1 2.1902 -2.7737 -0.7090 35 1 2.6826 -2.1465 -3.2505 36 1 3.5727 0.5804 -4.2937 37 1 4.4443 -0.4084 -3.0976 38 1 4.6672 -2.2294 -4.7663 39 1 5.3907 -0.7189 -5.3685 40 1 4.0088 -1.8040 -7.1187 41 1 3.3184 -0.2341 -6.6416 42 1 2.4282 -2.9613 -5.5991 43 1 1.5566 -1.9724 -6.7949 44 1 0.6102 -1.6619 -4.5240 45 1 1.3337 -0.1514 -5.1262 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987872281.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:01:13 Heat of formation + Delta-G solvation = -51.308486 kcal Electronic energy + Delta-G solvation = -23466.843912 eV Core-core repulsion = 20290.096373 eV Total energy + Delta-G solvation = -3176.747539 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.13279 -38.19274 -36.76230 -33.96384 -32.01257 -31.31738 -30.64297 -30.23999 -28.41197 -25.44251 -24.01250 -23.58500 -22.47648 -21.47958 -20.13364 -19.47557 -18.38045 -17.32043 -16.67710 -15.98362 -15.29056 -14.67336 -14.41043 -14.14268 -14.00248 -13.75549 -13.71662 -13.31333 -13.07488 -12.69499 -12.56482 -12.24954 -12.12984 -12.07772 -11.68894 -11.59112 -11.22725 -11.14166 -11.03571 -10.93432 -10.73612 -10.64549 -10.54393 -10.31109 -10.29016 -10.02040 -9.97663 -9.73830 -9.21035 -9.01042 -8.15911 -7.05472 -5.84401 -3.14807 3.05079 3.37957 3.43482 3.44238 3.45484 4.51222 4.69602 4.79086 4.85273 5.03006 5.17510 5.25906 5.31539 5.36017 5.40949 5.53135 5.54237 5.57050 5.59586 5.62042 5.70584 5.72077 5.83670 5.89556 5.90969 6.03760 6.09336 6.14993 6.18198 6.21417 6.24178 6.28438 6.34248 6.43314 6.45284 6.50272 6.55647 6.63942 6.71632 6.88858 7.62056 8.04015 8.32748 8.62959 9.44667 10.00257 10.35073 11.37430 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.013080 B = 0.006579 C = 0.004781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2140.122622 B = 4254.899205 C = 5854.601771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.137 3.863 3 H 0.071 0.929 4 C -0.139 4.139 5 C 0.169 3.831 6 H 0.073 0.927 7 N -0.711 5.711 8 C -0.247 4.247 9 H 0.072 0.928 10 C -0.008 4.008 11 N -0.928 5.928 12 Si 0.906 3.094 13 H -0.289 1.289 14 H -0.291 1.291 15 H -0.281 1.281 16 C 0.069 3.931 17 N -0.598 5.598 18 C 0.535 3.465 19 O -0.555 6.555 20 C -0.098 4.098 21 C -0.108 4.108 22 C -0.115 4.115 23 C -0.120 4.120 24 C -0.117 4.117 25 C -0.101 4.101 26 H 0.059 0.941 27 H 0.066 0.934 28 H 0.051 0.949 29 H 0.082 0.918 30 H 0.073 0.927 31 H 0.386 0.614 32 H 0.256 0.744 33 H 0.080 0.920 34 H 0.053 0.947 35 H 0.085 0.915 36 H 0.065 0.935 37 H 0.078 0.922 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.059 0.941 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.061 0.939 44 H 0.059 0.941 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.770 -6.644 -7.696 14.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.034 3.966 3 H 0.089 0.911 4 C -0.178 4.178 5 C 0.056 3.944 6 H 0.091 0.909 7 N -0.350 5.350 8 C -0.378 4.378 9 H 0.090 0.910 10 C -0.205 4.205 11 N -0.575 5.575 12 Si 0.736 3.264 13 H -0.217 1.217 14 H -0.218 1.218 15 H -0.207 1.207 16 C -0.058 4.058 17 N -0.331 5.331 18 C 0.324 3.676 19 O -0.434 6.434 20 C -0.119 4.119 21 C -0.146 4.146 22 C -0.153 4.153 23 C -0.158 4.158 24 C -0.155 4.155 25 C -0.139 4.139 26 H 0.078 0.922 27 H 0.085 0.915 28 H 0.070 0.930 29 H 0.101 0.899 30 H 0.091 0.909 31 H 0.220 0.780 32 H 0.066 0.934 33 H 0.098 0.902 34 H 0.071 0.929 35 H 0.104 0.896 36 H 0.084 0.916 37 H 0.097 0.903 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.077 0.923 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.080 0.920 44 H 0.078 0.922 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -9.987 -6.213 -7.864 14.148 hybrid contribution 1.028 -0.071 0.042 1.031 sum -8.959 -6.285 -7.821 13.451 Atomic orbital electron populations 1.22140 0.95576 1.01589 1.02424 1.21458 0.93523 0.96602 0.85023 0.91061 1.23082 0.98274 1.00038 0.96448 1.21325 0.87032 0.94374 0.91661 0.90883 1.42325 1.00034 1.05500 1.87176 1.19228 0.83177 0.91993 1.43381 0.90998 1.24754 0.97873 0.95328 1.02503 1.69669 1.29042 1.02150 1.56651 0.86222 0.84594 0.77955 0.77579 1.21681 1.21772 1.20682 1.23389 0.94479 0.86966 1.00938 1.48454 1.51601 1.28470 1.04558 1.20258 0.80830 0.84096 0.82444 1.90613 1.38513 1.30845 1.83440 1.21244 0.96696 1.00125 0.93847 1.21439 0.94650 0.99098 0.99386 1.21500 0.98178 1.00689 0.94923 1.21564 0.95769 1.00794 0.97661 1.21532 0.96721 0.99217 0.97981 1.21385 0.97146 1.01574 0.93762 0.92243 0.91463 0.93029 0.89913 0.90887 0.78022 0.93386 0.90200 0.92856 0.89629 0.91581 0.90295 0.91835 0.91666 0.92256 0.91998 0.92057 0.92043 0.92218 0.90867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.32 9.11 37.16 0.34 -1.98 16 2 C 0.14 2.29 3.48 -66.95 -0.23 2.05 16 3 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 4 C -0.14 -2.16 6.08 -24.89 -0.15 -2.32 16 5 C 0.17 3.05 3.72 -65.78 -0.24 2.81 16 6 H 0.07 1.28 8.09 -51.93 -0.42 0.86 16 7 N -0.71 -16.62 5.23 -51.34 -0.27 -16.89 16 8 C -0.25 -6.41 9.96 -15.06 -0.15 -6.56 16 9 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 10 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 11 N -0.93 -27.21 13.06 55.49 0.72 -26.48 16 12 Si 0.91 21.57 29.55 -169.99 -5.02 16.54 16 13 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 14 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 15 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 16 C 0.07 1.13 6.03 -2.53 -0.02 1.11 16 17 N -0.60 -10.35 3.06 -163.02 -0.50 -10.85 16 18 C 0.53 9.58 6.69 -10.99 -0.07 9.51 16 19 O -0.56 -11.38 15.10 5.56 0.08 -11.29 16 20 C -0.10 -1.46 2.01 -91.77 -0.18 -1.64 16 21 C -0.11 -1.66 5.19 -26.73 -0.14 -1.80 16 22 C -0.12 -1.47 5.92 -26.73 -0.16 -1.62 16 23 C -0.12 -1.32 5.92 -26.73 -0.16 -1.48 16 24 C -0.12 -1.25 5.92 -26.73 -0.16 -1.41 16 25 C -0.10 -1.32 4.84 -26.73 -0.13 -1.45 16 26 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.07 1.11 6.71 -51.93 -0.35 0.76 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 30 H 0.07 0.95 7.85 -51.93 -0.41 0.54 16 31 H 0.39 9.95 7.86 -40.82 -0.32 9.63 16 32 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 33 H 0.08 1.42 7.28 -51.93 -0.38 1.04 16 34 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.09 1.19 6.83 -51.93 -0.35 0.84 16 36 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.07 1.05 7.85 -51.93 -0.41 0.65 16 LS Contribution 350.31 15.07 5.28 5.28 Total: -1.00 -29.70 350.31 -9.36 -39.06 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: -8.10 Total: 9.72 kcal Atomic # 6 Polarization: -3.53 SS G_CDS: -1.55 Total: -5.09 kcal Atomic # 7 Polarization: -54.17 SS G_CDS: -0.04 Total: -54.22 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: 0.08 Total: -11.29 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -29.70 -9.36 -39.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987872281.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.250 kcal (2) G-P(sol) polarization free energy of solvation -29.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds