Wall clock time and date at job start Tue Mar 31 2020 02:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.87425 * 2 1 4 4 C 1.54322 * 109.87931 * 121.00854 * 2 1 3 5 5 C 1.55162 * 102.93936 * 141.61085 * 4 2 1 6 6 H 1.09000 * 111.00538 * 206.38826 * 5 4 2 7 7 N 1.46500 * 111.00465 * 82.57288 * 5 4 2 8 8 C 1.36939 * 119.99667 * 154.99873 * 7 5 4 9 9 H 1.07997 * 120.00199 * 0.02562 * 8 7 5 10 10 C 1.38817 * 119.99528 * 179.97438 * 8 7 5 11 11 N 1.31620 * 120.00124 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 119.99801 * 180.02562 * 10 8 7 13 13 H 1.48494 * 109.46911 * 90.00390 * 12 10 8 14 14 H 1.48502 * 109.47316 * 210.00577 * 12 10 8 15 15 H 1.48498 * 109.47191 * 330.00671 * 12 10 8 16 16 C 1.54911 * 101.58138 * 324.49911 * 5 4 2 17 17 N 1.47018 * 109.88407 * 238.82115 * 2 1 3 18 18 C 1.34779 * 125.65076 * 61.61659 * 17 2 1 19 19 O 1.21281 * 119.99847 * 355.15916 * 18 17 2 20 20 C 1.50692 * 119.99903 * 175.15483 * 18 17 2 21 21 C 1.53004 * 109.47371 * 266.67789 * 20 18 17 22 22 C 1.53000 * 109.47296 * 180.02562 * 21 20 18 23 23 C 1.52998 * 109.46912 * 60.00651 * 22 21 20 24 24 C 1.53005 * 109.46806 * 299.99437 * 23 22 21 25 25 C 1.53000 * 109.46925 * 60.00572 * 24 23 22 26 26 H 1.09000 * 109.46599 * 300.44476 * 1 2 3 27 27 H 1.09004 * 109.46794 * 60.43950 * 1 2 3 28 28 H 1.08995 * 109.47370 * 180.44376 * 1 2 3 29 29 H 1.08994 * 110.72400 * 259.97092 * 4 2 1 30 30 H 1.09002 * 110.72064 * 23.07298 * 4 2 1 31 31 H 0.96997 * 120.00054 * 335.00111 * 7 5 4 32 32 H 0.97001 * 119.99712 * 179.97438 * 11 10 8 33 33 H 1.09001 * 110.36406 * 155.84933 * 16 5 4 34 34 H 1.09004 * 110.36622 * 278.06092 * 16 5 4 35 35 H 1.08995 * 109.47826 * 26.68227 * 20 18 17 36 36 H 1.08998 * 109.47492 * 300.00856 * 21 20 18 37 37 H 1.09001 * 109.46593 * 60.00390 * 21 20 18 38 38 H 1.09001 * 109.46910 * 300.00214 * 22 21 20 39 39 H 1.09004 * 109.46833 * 180.02562 * 22 21 20 40 40 H 1.09006 * 109.47129 * 180.02562 * 23 22 21 41 41 H 1.08990 * 109.47561 * 59.99594 * 23 22 21 42 42 H 1.09006 * 109.47476 * 300.00238 * 24 23 22 43 43 H 1.09001 * 109.46790 * 180.02562 * 24 23 22 44 44 H 1.09004 * 109.46833 * 179.97438 * 25 24 23 45 45 H 1.09001 * 109.46910 * 59.99800 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0548 -0.7476 1.2439 5 6 3.2876 -1.5132 0.6947 6 1 3.4856 -2.4088 1.2836 7 7 4.4674 -0.6459 0.6504 8 6 5.7217 -1.1931 0.7005 9 1 5.8412 -2.2640 0.7723 10 6 6.8396 -0.3712 0.6580 11 7 6.6940 0.9339 0.5700 12 14 8.5507 -1.1177 0.7258 13 1 9.0190 -1.4079 -0.6532 14 1 9.4830 -0.1607 1.3741 15 1 8.5103 -2.3779 1.5103 16 6 2.8145 -1.8805 -0.7340 17 7 2.0301 -0.7157 -1.1828 18 6 1.8077 -0.3655 -2.4652 19 8 1.0723 0.5644 -2.7210 20 6 2.4727 -1.1293 -3.5810 21 6 3.7825 -0.4368 -3.9632 22 6 4.4574 -1.2120 -5.0966 23 6 3.5282 -1.2514 -6.3114 24 6 2.2184 -1.9439 -5.9293 25 6 1.5435 -1.1688 -4.7959 26 1 -0.3632 0.5207 0.8860 27 1 -0.3633 0.5070 -0.8940 28 1 -0.3634 -1.0276 0.0080 29 1 2.3529 -0.0430 2.0201 30 1 1.3039 -1.4412 1.6222 31 1 4.3601 0.3160 0.5856 32 1 7.4752 1.5082 0.5407 33 1 3.6717 -2.0359 -1.3892 34 1 2.1902 -2.7737 -0.7090 35 1 2.6826 -2.1465 -3.2505 36 1 3.5727 0.5804 -4.2937 37 1 4.4443 -0.4084 -3.0976 38 1 4.6672 -2.2294 -4.7663 39 1 5.3907 -0.7189 -5.3685 40 1 4.0088 -1.8040 -7.1187 41 1 3.3184 -0.2341 -6.6416 42 1 2.4282 -2.9613 -5.5991 43 1 1.5566 -1.9724 -6.7949 44 1 0.6102 -1.6619 -4.5240 45 1 1.3337 -0.1514 -5.1262 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987872281.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:01:12 Heat of formation + Delta-G solvation = -68.403013 kcal Electronic energy + Delta-G solvation = -23467.585187 eV Core-core repulsion = 20290.096373 eV Total energy + Delta-G solvation = -3177.488814 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.49026 -39.44558 -38.11093 -35.77444 -33.33847 -33.05381 -31.70544 -31.39769 -30.09415 -26.74481 -25.74504 -25.02027 -23.53664 -22.75694 -21.49501 -20.62086 -19.74514 -19.25022 -18.05644 -17.43427 -16.53772 -16.39783 -15.71416 -15.54583 -15.34010 -15.08294 -14.96858 -14.79541 -14.53843 -14.11225 -13.70972 -13.54506 -13.32629 -13.17581 -13.14817 -12.94663 -12.87900 -12.68198 -12.40139 -12.21530 -12.17013 -12.09629 -11.97805 -11.63762 -11.58233 -11.47293 -11.38290 -11.04848 -11.00025 -10.51032 -9.62245 -8.96629 -7.92210 -5.21139 1.49362 1.49744 1.58199 1.63164 2.11337 2.57356 3.38537 3.45801 3.69779 3.78607 3.81749 3.89495 3.94914 4.13107 4.22520 4.23753 4.30303 4.36908 4.41041 4.50257 4.53124 4.55738 4.67002 4.69694 4.76440 4.78967 4.92421 4.93850 5.06762 5.10423 5.13234 5.18102 5.22547 5.22747 5.24182 5.31815 5.35072 5.36790 5.51451 5.56260 5.57267 6.28242 6.64901 7.21670 7.35000 8.09674 8.32283 9.31214 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.013080 B = 0.006579 C = 0.004781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2140.122622 B = 4254.899205 C = 5854.601771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.131 3.869 3 H 0.035 0.965 4 C -0.123 4.123 5 C 0.157 3.843 6 H 0.090 0.910 7 N -0.725 5.725 8 C -0.233 4.233 9 H 0.086 0.914 10 C -0.075 4.075 11 N -0.972 5.972 12 Si 0.967 3.033 13 H -0.290 1.290 14 H -0.303 1.303 15 H -0.264 1.264 16 C 0.077 3.923 17 N -0.602 5.602 18 C 0.524 3.476 19 O -0.588 6.588 20 C -0.092 4.092 21 C -0.102 4.102 22 C -0.112 4.112 23 C -0.117 4.117 24 C -0.111 4.111 25 C -0.096 4.096 26 H 0.079 0.921 27 H 0.043 0.957 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.112 0.888 31 H 0.369 0.631 32 H 0.247 0.753 33 H 0.064 0.936 34 H 0.093 0.907 35 H 0.101 0.899 36 H 0.047 0.953 37 H 0.041 0.959 38 H 0.072 0.928 39 H 0.063 0.937 40 H 0.082 0.918 41 H 0.055 0.945 42 H 0.075 0.925 43 H 0.081 0.919 44 H 0.065 0.935 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.747 -9.755 -8.137 16.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.028 3.972 3 H 0.054 0.946 4 C -0.162 4.162 5 C 0.047 3.953 6 H 0.108 0.892 7 N -0.363 5.363 8 C -0.365 4.365 9 H 0.104 0.896 10 C -0.267 4.267 11 N -0.623 5.623 12 Si 0.797 3.203 13 H -0.218 1.218 14 H -0.230 1.230 15 H -0.189 1.189 16 C -0.048 4.048 17 N -0.334 5.334 18 C 0.314 3.686 19 O -0.470 6.470 20 C -0.113 4.113 21 C -0.141 4.141 22 C -0.149 4.149 23 C -0.155 4.155 24 C -0.148 4.148 25 C -0.134 4.134 26 H 0.098 0.902 27 H 0.062 0.938 28 H 0.088 0.912 29 H 0.092 0.908 30 H 0.130 0.870 31 H 0.200 0.800 32 H 0.056 0.944 33 H 0.083 0.917 34 H 0.111 0.889 35 H 0.119 0.881 36 H 0.066 0.934 37 H 0.060 0.940 38 H 0.091 0.909 39 H 0.082 0.918 40 H 0.101 0.899 41 H 0.074 0.926 42 H 0.093 0.907 43 H 0.099 0.901 44 H 0.084 0.916 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.995 -9.397 -8.292 16.672 hybrid contribution 1.252 0.900 0.221 1.557 sum -9.743 -8.497 -8.071 15.240 Atomic orbital electron populations 1.22021 0.93489 1.02701 1.02245 1.21528 0.95140 0.95046 0.85532 0.94627 1.23004 0.97770 1.00035 0.95396 1.21650 0.86194 0.94431 0.93066 0.89227 1.42522 1.01105 1.05284 1.87355 1.19674 0.84158 0.92503 1.40135 0.89635 1.25516 1.01501 0.95674 1.04004 1.69842 1.29244 1.03580 1.59594 0.85224 0.80274 0.77434 0.77355 1.21777 1.23013 1.18857 1.23303 0.94628 0.87864 0.99002 1.48599 1.51343 1.28727 1.04684 1.20893 0.80508 0.83955 0.83251 1.90590 1.40079 1.32315 1.83979 1.21275 0.96270 1.00046 0.93676 1.21347 0.94677 0.98968 0.99070 1.21493 0.98319 1.00478 0.94622 1.21559 0.95677 1.01047 0.97197 1.21526 0.96503 0.99212 0.97576 1.21367 0.97233 1.01079 0.93740 0.90215 0.93833 0.91157 0.90826 0.86994 0.80018 0.94376 0.91747 0.88888 0.88103 0.93442 0.93992 0.90895 0.91825 0.89917 0.92585 0.90673 0.90072 0.91589 0.92812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.04 9.11 71.98 0.66 -3.39 16 2 C 0.13 4.32 3.48 45.34 0.16 4.47 16 3 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 4 C -0.12 -3.59 6.08 31.78 0.19 -3.40 16 5 C 0.16 5.40 3.72 46.39 0.17 5.57 16 6 H 0.09 2.84 8.09 -2.39 -0.02 2.82 16 7 N -0.72 -34.06 5.23 -316.36 -1.66 -35.72 16 8 C -0.23 -12.04 9.96 84.03 0.84 -11.20 16 9 H 0.09 4.11 7.83 -2.91 -0.02 4.09 16 10 C -0.07 -4.15 5.50 84.86 0.47 -3.69 16 11 N -0.97 -59.04 13.06 21.65 0.28 -58.76 16 12 Si 0.97 44.76 29.55 68.60 2.03 46.79 16 13 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 14 H -0.30 -14.46 7.11 99.48 0.71 -13.76 16 15 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 16 C 0.08 2.39 6.03 86.86 0.52 2.91 16 17 N -0.60 -20.55 3.06 -788.05 -2.42 -22.97 16 18 C 0.52 18.98 6.69 87.65 0.59 19.57 16 19 O -0.59 -24.88 15.10 -3.03 -0.05 -24.93 16 20 C -0.09 -2.69 2.01 -11.54 -0.02 -2.71 16 21 C -0.10 -3.26 5.19 30.60 0.16 -3.10 16 22 C -0.11 -2.73 5.92 30.59 0.18 -2.55 16 23 C -0.12 -2.31 5.92 30.60 0.18 -2.13 16 24 C -0.11 -2.05 5.92 30.60 0.18 -1.87 16 25 C -0.10 -2.40 4.84 30.60 0.15 -2.25 16 26 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 27 H 0.04 1.42 6.71 -2.38 -0.02 1.40 16 28 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 30 H 0.11 2.43 7.85 -2.39 -0.02 2.42 16 31 H 0.37 19.69 7.86 -92.71 -0.73 18.97 16 32 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 33 H 0.06 2.22 7.28 -2.39 -0.02 2.20 16 34 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.10 2.63 6.83 -2.39 -0.02 2.61 16 36 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 41 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 43 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 44 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 45 H 0.05 1.55 7.85 -2.39 -0.02 1.53 16 Total: -1.00 -66.94 350.31 2.83 -64.11 By element: Atomic # 1 Polarization: 35.01 SS G_CDS: 0.22 Total: 35.23 kcal Atomic # 6 Polarization: -8.18 SS G_CDS: 4.42 Total: -3.76 kcal Atomic # 7 Polarization: -113.65 SS G_CDS: -3.79 Total: -117.44 kcal Atomic # 8 Polarization: -24.88 SS G_CDS: -0.05 Total: -24.93 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -66.94 2.83 -64.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987872281.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.292 kcal (2) G-P(sol) polarization free energy of solvation -66.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds