Wall clock time and date at job start Tue Mar 31 2020 02:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.58346 * 2 1 4 4 C 1.53190 * 109.58520 * 239.71321 * 2 1 3 5 5 H 1.08999 * 109.49651 * 305.42249 * 4 2 1 6 6 N 1.46497 * 109.49619 * 65.48662 * 4 2 1 7 7 C 1.34781 * 120.00065 * 204.72454 * 6 4 2 8 8 O 1.21281 * 120.00022 * 0.27336 * 7 6 4 9 9 C 1.50702 * 120.00156 * 180.27522 * 7 6 4 10 10 C 1.53002 * 112.84848 * 50.32750 * 9 7 6 11 11 C 1.53781 * 113.61009 * 279.13717 * 9 7 6 12 12 C 1.53962 * 87.01712 * 220.04454 * 11 9 7 13 13 C 1.53775 * 113.61658 * 181.53016 * 9 7 6 14 14 C 1.53037 * 109.31245 * 185.43680 * 4 2 1 15 15 C 1.53034 * 109.53989 * 61.36642 * 14 4 2 16 16 C 1.53196 * 109.31283 * 298.63617 * 15 14 4 17 17 N 1.46924 * 108.77646 * 54.63448 * 16 15 14 18 18 C 1.36932 * 120.63109 * 126.36916 * 17 16 15 19 19 H 1.08003 * 120.00230 * 209.57048 * 18 17 16 20 20 C 1.38806 * 119.99932 * 29.57084 * 18 17 16 21 21 N 1.31620 * 120.00259 * 16.15890 * 20 18 17 22 22 Si 1.86806 * 120.00045 * 196.15361 * 20 18 17 23 23 H 1.48504 * 109.46686 * 94.02208 * 22 20 18 24 24 H 1.48497 * 109.47479 * 214.02392 * 22 20 18 25 25 H 1.48501 * 109.47003 * 334.02563 * 22 20 18 26 26 H 1.09003 * 109.47091 * 180.28933 * 1 2 3 27 27 H 1.09004 * 109.46695 * 300.28130 * 1 2 3 28 28 H 1.08995 * 109.47134 * 60.28425 * 1 2 3 29 29 H 0.97007 * 120.00085 * 24.99674 * 6 4 2 30 30 H 1.08998 * 109.46760 * 69.67148 * 10 9 7 31 31 H 1.09002 * 109.46579 * 189.66464 * 10 9 7 32 32 H 1.08990 * 109.47266 * 309.66831 * 10 9 7 33 33 H 1.08996 * 113.61823 * 334.56290 * 11 9 7 34 34 H 1.09001 * 113.61600 * 105.47713 * 11 9 7 35 35 H 1.09000 * 113.54027 * 270.81177 * 12 11 9 36 36 H 1.09002 * 113.73833 * 139.93965 * 12 11 9 37 37 H 1.09003 * 113.61477 * 254.53207 * 13 9 7 38 38 H 1.09002 * 113.61354 * 25.43052 * 13 9 7 39 39 H 1.09005 * 109.45992 * 181.38755 * 14 4 2 40 40 H 1.09006 * 109.46014 * 301.34175 * 14 4 2 41 41 H 1.09004 * 109.50049 * 178.68309 * 15 14 4 42 42 H 1.09007 * 109.52522 * 58.60385 * 15 14 4 43 43 H 1.09004 * 109.58135 * 294.84542 * 16 15 14 44 44 H 1.09002 * 109.69932 * 174.49337 * 16 15 14 45 45 H 0.97003 * 120.00122 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7279 -1.2463 5 1 1.6044 -1.7244 -1.2923 6 7 1.6676 0.0279 -2.4436 7 6 1.5495 -0.6024 -3.6290 8 8 1.7496 -1.7963 -3.7036 9 6 1.1688 0.1762 -4.8619 10 6 2.0275 1.4263 -5.0637 11 6 -0.3414 0.4402 -4.9817 12 6 -0.1901 0.1557 -6.4872 13 6 1.0398 -0.6929 -6.1239 14 6 3.5678 -0.8435 -1.1729 15 6 3.9603 -1.6609 0.0599 16 6 3.4685 -0.9436 1.3211 17 7 2.0254 -0.6990 1.1937 18 6 1.1585 -1.1151 2.1686 19 1 0.1435 -1.3801 1.9115 20 6 1.5842 -1.1964 3.4872 21 7 2.6898 -0.5875 3.8606 22 14 0.5880 -2.1698 4.7321 23 1 1.1245 -3.5515 4.8237 24 1 0.6797 -1.5139 6.0612 25 1 -0.8322 -2.2179 4.3007 26 1 -0.3633 -1.0277 0.0052 27 1 -0.3633 0.5182 0.8875 28 1 -0.3633 0.5094 -0.8925 29 1 1.5075 0.9829 -2.3840 30 1 3.0414 1.1310 -5.3336 31 1 1.6017 2.0345 -5.8618 32 1 2.0511 2.0040 -4.1398 33 1 -0.9557 -0.2925 -4.4585 34 1 -0.6240 1.4687 -4.7572 35 1 0.0489 1.0414 -7.0758 36 1 -1.0113 -0.4239 -6.9089 37 1 1.8707 -0.5780 -6.8201 38 1 0.8038 -1.7361 -5.9135 39 1 3.9380 -1.3392 -2.0703 40 1 4.0045 0.1528 -1.1022 41 1 5.0449 -1.7626 0.0988 42 1 3.5041 -2.6492 0.0021 43 1 3.9921 0.0064 1.4287 44 1 3.6579 -1.5663 2.1954 45 1 2.9875 -0.6446 4.7821 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993671734.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:11:58 Heat of formation + Delta-G solvation = -9.684163 kcal Electronic energy + Delta-G solvation = -23351.149749 eV Core-core repulsion = 20176.207176 eV Total energy + Delta-G solvation = -3174.942573 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.56589 -38.47946 -37.02386 -34.27004 -32.56363 -31.69119 -30.06059 -28.83199 -26.31544 -25.76554 -25.09332 -24.66070 -22.24230 -20.68397 -20.51666 -19.54146 -18.40935 -17.10608 -16.42326 -15.74025 -15.33547 -14.96292 -14.77138 -14.22386 -13.82269 -13.67887 -13.57874 -13.35345 -12.87710 -12.66415 -12.60399 -12.47289 -12.36164 -11.69630 -11.53145 -11.45506 -11.22102 -11.08946 -10.91132 -10.76392 -10.64933 -10.53941 -10.43618 -10.26136 -10.10089 -10.02265 -9.80208 -9.46125 -9.21466 -8.61330 -8.43844 -6.66718 -5.79441 -3.23683 2.87069 3.37915 3.43205 3.45704 3.49346 4.32131 4.40329 4.49215 4.61737 4.63750 4.97367 5.27770 5.29933 5.37358 5.41624 5.48627 5.54429 5.60401 5.66079 5.67065 5.71777 5.81462 5.85246 5.87805 5.98609 6.07322 6.11916 6.23139 6.28649 6.35765 6.42316 6.55144 6.66033 6.75422 6.77584 6.87964 7.00399 7.09618 7.40020 7.66440 7.81967 7.84946 8.43841 8.54151 9.20335 9.83151 10.39914 11.29245 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.030063 B = 0.004302 C = 0.004057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.138476 B = 6506.417815 C = 6899.268459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.168 3.832 3 H 0.026 0.974 4 C 0.130 3.870 5 H 0.084 0.916 6 N -0.716 5.716 7 C 0.525 3.475 8 O -0.544 6.544 9 C -0.112 4.112 10 C -0.126 4.126 11 C -0.121 4.121 12 C -0.141 4.141 13 C -0.114 4.114 14 C -0.116 4.116 15 C -0.140 4.140 16 C 0.170 3.830 17 N -0.582 5.582 18 C -0.252 4.252 19 H 0.070 0.930 20 C 0.005 3.995 21 N -0.902 5.902 22 Si 0.901 3.099 23 H -0.287 1.287 24 H -0.292 1.292 25 H -0.278 1.278 26 H 0.054 0.946 27 H 0.063 0.937 28 H 0.038 0.962 29 H 0.395 0.605 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.085 0.915 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.093 0.907 39 H 0.048 0.952 40 H 0.053 0.947 41 H 0.051 0.949 42 H 0.056 0.944 43 H 0.019 0.981 44 H 0.087 0.913 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.483 4.995 -17.366 18.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.060 3.940 3 H 0.044 0.956 4 C 0.024 3.976 5 H 0.102 0.898 6 N -0.366 5.366 7 C 0.311 3.689 8 O -0.421 6.421 9 C -0.115 4.115 10 C -0.183 4.183 11 C -0.159 4.159 12 C -0.178 4.178 13 C -0.152 4.152 14 C -0.155 4.155 15 C -0.180 4.180 16 C 0.045 3.955 17 N -0.305 5.305 18 C -0.382 4.382 19 H 0.088 0.912 20 C -0.194 4.194 21 N -0.546 5.546 22 Si 0.731 3.269 23 H -0.214 1.214 24 H -0.218 1.218 25 H -0.204 1.204 26 H 0.073 0.927 27 H 0.082 0.918 28 H 0.057 0.943 29 H 0.228 0.772 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.103 0.897 34 H 0.093 0.907 35 H 0.099 0.901 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.112 0.888 39 H 0.067 0.933 40 H 0.072 0.928 41 H 0.069 0.931 42 H 0.074 0.926 43 H 0.037 0.963 44 H 0.105 0.895 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -2.283 4.144 -17.201 17.840 hybrid contribution -0.380 0.003 0.806 0.892 sum -2.663 4.147 -16.394 17.119 Atomic orbital electron populations 1.21808 0.95703 1.01657 1.00167 1.20554 0.93204 0.93521 0.86698 0.95609 1.21764 0.94955 0.96860 0.84002 0.89772 1.46157 1.69848 1.12150 1.08419 1.20301 0.76513 0.87791 0.84313 1.90671 1.50429 1.15258 1.85788 1.22159 0.97489 0.97409 0.94452 1.21578 0.99327 0.95041 1.02381 1.22940 0.93593 1.02362 0.97005 1.22859 0.98681 1.00207 0.96088 1.22853 0.98063 0.99447 0.94798 1.21749 0.95516 0.99944 0.98244 1.22180 0.99170 0.99721 0.96928 1.20820 0.83135 0.97166 0.94422 1.44029 1.03088 1.65098 1.18307 1.19180 0.95198 1.37723 0.86082 0.91214 1.25070 0.97955 0.99444 0.96912 1.70038 1.24433 1.43332 1.16773 0.86295 0.79792 0.79929 0.80870 1.21446 1.21800 1.20366 0.92728 0.91816 0.94299 0.77161 0.91806 0.91484 0.91848 0.89658 0.90676 0.90066 0.91181 0.91221 0.88803 0.93286 0.92849 0.93056 0.92552 0.96313 0.89511 0.93672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 7.84 37.16 0.29 -2.24 16 2 C 0.17 3.40 3.03 -67.60 -0.20 3.19 16 3 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 4 C 0.13 2.39 1.99 -67.81 -0.14 2.25 16 5 H 0.08 1.80 7.58 -51.93 -0.39 1.41 16 6 N -0.72 -10.59 4.46 -53.69 -0.24 -10.83 16 7 C 0.53 7.97 6.88 -10.98 -0.08 7.90 16 8 O -0.54 -10.52 15.58 5.56 0.09 -10.43 16 9 C -0.11 -1.23 1.25 -154.85 -0.19 -1.42 16 10 C -0.13 -1.10 8.98 37.16 0.33 -0.76 16 11 C -0.12 -1.15 7.21 -25.82 -0.19 -1.34 16 12 C -0.14 -1.17 7.74 -25.82 -0.20 -1.37 16 13 C -0.11 -1.20 6.99 -25.92 -0.18 -1.38 16 14 C -0.12 -2.13 5.46 -26.69 -0.15 -2.27 16 15 C -0.14 -2.81 6.08 -26.61 -0.16 -2.97 16 16 C 0.17 4.05 5.29 -3.71 -0.02 4.03 16 17 N -0.58 -14.24 2.99 -164.77 -0.49 -14.73 16 18 C -0.25 -6.74 8.59 -15.06 -0.13 -6.86 16 19 H 0.07 1.83 6.24 -52.48 -0.33 1.50 16 20 C 0.00 0.14 4.92 -17.43 -0.09 0.05 16 21 N -0.90 -25.81 11.25 55.49 0.62 -25.18 16 22 Si 0.90 21.58 29.58 -169.99 -5.03 16.55 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 25 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 26 H 0.05 1.08 7.41 -51.93 -0.38 0.69 16 27 H 0.06 1.26 7.67 -51.93 -0.40 0.87 16 28 H 0.04 0.59 7.78 -51.93 -0.40 0.19 16 29 H 0.39 4.87 7.59 -40.82 -0.31 4.56 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.47 7.34 -51.93 -0.38 0.09 16 32 H 0.06 0.52 7.11 -51.93 -0.37 0.15 16 33 H 0.08 0.91 8.09 -51.93 -0.42 0.49 16 34 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 35 H 0.08 0.56 7.64 -51.93 -0.40 0.16 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.67 8.10 -51.93 -0.42 0.25 16 38 H 0.09 1.17 7.45 -51.93 -0.39 0.79 16 39 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 42 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 43 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.09 2.31 6.14 -51.93 -0.32 1.99 16 45 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 345.11 15.07 5.20 5.20 Total: -1.00 -30.44 345.11 -8.79 -39.23 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -7.85 Total: 3.41 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: -1.09 Total: -3.21 kcal Atomic # 7 Polarization: -50.64 SS G_CDS: -0.11 Total: -50.75 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.09 Total: -10.43 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.03 Total: 16.55 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.44 -8.79 -39.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993671734.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.546 kcal (2) G-P(sol) polarization free energy of solvation -30.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds