Wall clock time and date at job start Tue Mar 31 2020 02:11:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.58346 * 2 1 4 4 C 1.53190 * 109.58520 * 239.71321 * 2 1 3 5 5 H 1.08999 * 109.49651 * 305.42249 * 4 2 1 6 6 N 1.46497 * 109.49619 * 65.48662 * 4 2 1 7 7 C 1.34781 * 120.00065 * 204.72454 * 6 4 2 8 8 O 1.21281 * 120.00022 * 0.27336 * 7 6 4 9 9 C 1.50702 * 120.00156 * 180.27522 * 7 6 4 10 10 C 1.53002 * 112.84848 * 50.32750 * 9 7 6 11 11 C 1.53781 * 113.61009 * 279.13717 * 9 7 6 12 12 C 1.53962 * 87.01712 * 220.04454 * 11 9 7 13 13 C 1.53775 * 113.61658 * 181.53016 * 9 7 6 14 14 C 1.53037 * 109.31245 * 185.43680 * 4 2 1 15 15 C 1.53034 * 109.53989 * 61.36642 * 14 4 2 16 16 C 1.53196 * 109.31283 * 298.63617 * 15 14 4 17 17 N 1.46924 * 108.77646 * 54.63448 * 16 15 14 18 18 C 1.36932 * 120.63109 * 126.36916 * 17 16 15 19 19 H 1.08003 * 120.00230 * 209.57048 * 18 17 16 20 20 C 1.38806 * 119.99932 * 29.57084 * 18 17 16 21 21 N 1.31620 * 120.00259 * 16.15890 * 20 18 17 22 22 Si 1.86806 * 120.00045 * 196.15361 * 20 18 17 23 23 H 1.48504 * 109.46686 * 94.02208 * 22 20 18 24 24 H 1.48497 * 109.47479 * 214.02392 * 22 20 18 25 25 H 1.48501 * 109.47003 * 334.02563 * 22 20 18 26 26 H 1.09003 * 109.47091 * 180.28933 * 1 2 3 27 27 H 1.09004 * 109.46695 * 300.28130 * 1 2 3 28 28 H 1.08995 * 109.47134 * 60.28425 * 1 2 3 29 29 H 0.97007 * 120.00085 * 24.99674 * 6 4 2 30 30 H 1.08998 * 109.46760 * 69.67148 * 10 9 7 31 31 H 1.09002 * 109.46579 * 189.66464 * 10 9 7 32 32 H 1.08990 * 109.47266 * 309.66831 * 10 9 7 33 33 H 1.08996 * 113.61823 * 334.56290 * 11 9 7 34 34 H 1.09001 * 113.61600 * 105.47713 * 11 9 7 35 35 H 1.09000 * 113.54027 * 270.81177 * 12 11 9 36 36 H 1.09002 * 113.73833 * 139.93965 * 12 11 9 37 37 H 1.09003 * 113.61477 * 254.53207 * 13 9 7 38 38 H 1.09002 * 113.61354 * 25.43052 * 13 9 7 39 39 H 1.09005 * 109.45992 * 181.38755 * 14 4 2 40 40 H 1.09006 * 109.46014 * 301.34175 * 14 4 2 41 41 H 1.09004 * 109.50049 * 178.68309 * 15 14 4 42 42 H 1.09007 * 109.52522 * 58.60385 * 15 14 4 43 43 H 1.09004 * 109.58135 * 294.84542 * 16 15 14 44 44 H 1.09002 * 109.69932 * 174.49337 * 16 15 14 45 45 H 0.97003 * 120.00122 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7279 -1.2463 5 1 1.6044 -1.7244 -1.2923 6 7 1.6676 0.0279 -2.4436 7 6 1.5495 -0.6024 -3.6290 8 8 1.7496 -1.7963 -3.7036 9 6 1.1688 0.1762 -4.8619 10 6 2.0275 1.4263 -5.0637 11 6 -0.3414 0.4402 -4.9817 12 6 -0.1901 0.1557 -6.4872 13 6 1.0398 -0.6929 -6.1239 14 6 3.5678 -0.8435 -1.1729 15 6 3.9603 -1.6609 0.0599 16 6 3.4685 -0.9436 1.3211 17 7 2.0254 -0.6990 1.1937 18 6 1.1585 -1.1151 2.1686 19 1 0.1435 -1.3801 1.9115 20 6 1.5842 -1.1964 3.4872 21 7 2.6898 -0.5875 3.8606 22 14 0.5880 -2.1698 4.7321 23 1 1.1245 -3.5515 4.8237 24 1 0.6797 -1.5139 6.0612 25 1 -0.8322 -2.2179 4.3007 26 1 -0.3633 -1.0277 0.0052 27 1 -0.3633 0.5182 0.8875 28 1 -0.3633 0.5094 -0.8925 29 1 1.5075 0.9829 -2.3840 30 1 3.0414 1.1310 -5.3336 31 1 1.6017 2.0345 -5.8618 32 1 2.0511 2.0040 -4.1398 33 1 -0.9557 -0.2925 -4.4585 34 1 -0.6240 1.4687 -4.7572 35 1 0.0489 1.0414 -7.0758 36 1 -1.0113 -0.4239 -6.9089 37 1 1.8707 -0.5780 -6.8201 38 1 0.8038 -1.7361 -5.9135 39 1 3.9380 -1.3392 -2.0703 40 1 4.0045 0.1528 -1.1022 41 1 5.0449 -1.7626 0.0988 42 1 3.5041 -2.6492 0.0021 43 1 3.9921 0.0064 1.4287 44 1 3.6579 -1.5663 2.1954 45 1 2.9875 -0.6446 4.7821 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993671734.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:11:57 Heat of formation + Delta-G solvation = -27.778859 kcal Electronic energy + Delta-G solvation = -23351.934394 eV Core-core repulsion = 20176.207176 eV Total energy + Delta-G solvation = -3175.727218 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.65209 -39.87011 -38.34873 -35.88508 -34.27531 -33.43051 -31.38261 -30.05419 -27.91469 -26.91051 -26.54888 -25.71875 -23.78991 -22.35782 -21.73944 -21.16517 -19.49841 -18.30799 -18.06866 -17.35161 -16.71864 -16.22013 -15.96797 -15.66709 -15.59737 -15.17459 -14.92760 -14.64346 -14.32309 -14.28267 -13.64775 -13.39958 -13.34882 -13.12687 -13.10605 -12.83700 -12.71678 -12.54729 -12.37407 -12.18865 -12.09091 -12.00073 -11.81614 -11.78840 -11.61979 -11.38342 -11.21274 -11.13934 -10.54604 -10.48541 -9.97778 -8.66122 -7.86618 -5.32672 1.45740 1.48373 1.56066 1.68635 2.21188 2.54045 3.28770 3.49427 3.57375 3.64658 3.81294 3.90113 3.91748 3.99841 4.13106 4.19916 4.34391 4.50898 4.60588 4.61778 4.71388 4.76663 4.79214 4.87127 4.90792 4.91370 4.95361 5.01738 5.07970 5.11304 5.12023 5.20644 5.22918 5.28029 5.34170 5.43741 5.49145 5.55669 5.61433 5.69574 5.75070 6.40928 6.65500 7.15441 7.34203 7.85619 8.37615 9.20401 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.030063 B = 0.004302 C = 0.004057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.138476 B = 6506.417815 C = 6899.268459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.165 3.835 3 H 0.034 0.966 4 C 0.146 3.854 5 H 0.052 0.948 6 N -0.705 5.705 7 C 0.521 3.479 8 O -0.591 6.591 9 C -0.109 4.109 10 C -0.123 4.123 11 C -0.120 4.120 12 C -0.125 4.125 13 C -0.123 4.123 14 C -0.108 4.108 15 C -0.130 4.130 16 C 0.177 3.823 17 N -0.600 5.600 18 C -0.255 4.255 19 H 0.071 0.929 20 C -0.046 4.046 21 N -0.932 5.932 22 Si 0.960 3.040 23 H -0.290 1.290 24 H -0.294 1.294 25 H -0.268 1.268 26 H 0.038 0.962 27 H 0.049 0.951 28 H 0.075 0.925 29 H 0.411 0.589 30 H 0.058 0.942 31 H 0.093 0.907 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.098 0.902 35 H 0.106 0.894 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.065 0.935 39 H 0.051 0.949 40 H 0.067 0.933 41 H 0.072 0.928 42 H 0.042 0.958 43 H 0.005 0.995 44 H 0.053 0.947 45 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.332 6.673 -19.501 20.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.059 3.941 3 H 0.051 0.949 4 C 0.039 3.961 5 H 0.070 0.930 6 N -0.356 5.356 7 C 0.309 3.691 8 O -0.471 6.471 9 C -0.112 4.112 10 C -0.181 4.181 11 C -0.158 4.158 12 C -0.162 4.162 13 C -0.161 4.161 14 C -0.146 4.146 15 C -0.170 4.170 16 C 0.051 3.949 17 N -0.324 5.324 18 C -0.385 4.385 19 H 0.088 0.912 20 C -0.242 4.242 21 N -0.578 5.578 22 Si 0.789 3.211 23 H -0.217 1.217 24 H -0.221 1.221 25 H -0.193 1.193 26 H 0.057 0.943 27 H 0.068 0.932 28 H 0.094 0.906 29 H 0.247 0.753 30 H 0.077 0.923 31 H 0.112 0.888 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.117 0.883 35 H 0.125 0.875 36 H 0.093 0.907 37 H 0.097 0.903 38 H 0.084 0.916 39 H 0.070 0.930 40 H 0.085 0.915 41 H 0.091 0.909 42 H 0.060 0.940 43 H 0.024 0.976 44 H 0.072 0.928 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -3.155 5.856 -19.370 20.480 hybrid contribution -0.114 -0.533 1.414 1.515 sum -3.268 5.323 -17.956 19.011 Atomic orbital electron populations 1.21717 0.94471 1.00923 1.01291 1.20710 0.94264 0.93454 0.85710 0.94866 1.21267 0.94713 0.95431 0.84701 0.92987 1.45965 1.69586 1.12701 1.07312 1.21162 0.75130 0.87507 0.85267 1.90654 1.52376 1.17592 1.86497 1.22300 0.99056 0.97952 0.91925 1.21622 0.98698 0.93953 1.03791 1.22963 0.91807 1.03210 0.97800 1.22844 0.97376 1.00511 0.95508 1.22878 0.99854 0.98307 0.95086 1.21666 0.95487 1.00285 0.97205 1.22025 1.00298 0.98685 0.95962 1.20617 0.83237 0.96136 0.94881 1.44267 1.03094 1.65883 1.19178 1.19445 0.95489 1.36891 0.86706 0.91161 1.25743 0.99134 1.00682 0.98602 1.70169 1.26003 1.44914 1.16734 0.85366 0.78983 0.78226 0.78570 1.21737 1.22052 1.19285 0.94321 0.93191 0.90618 0.75261 0.92272 0.88838 0.91087 0.91445 0.88324 0.87525 0.90691 0.90283 0.91641 0.92997 0.91454 0.90917 0.93963 0.97647 0.92838 0.94191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.60 7.84 71.98 0.56 -4.03 16 2 C 0.17 6.58 3.03 44.97 0.14 6.72 16 3 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 4 C 0.15 5.28 1.99 45.07 0.09 5.37 16 5 H 0.05 2.26 7.58 -2.39 -0.02 2.24 16 6 N -0.70 -19.64 4.46 -442.17 -1.97 -21.61 16 7 C 0.52 15.23 6.88 87.66 0.60 15.83 16 8 O -0.59 -23.03 15.58 -3.03 -0.05 -23.08 16 9 C -0.11 -2.13 1.25 -52.40 -0.07 -2.20 16 10 C -0.12 -1.69 8.98 71.98 0.65 -1.04 16 11 C -0.12 -1.91 7.21 31.18 0.22 -1.69 16 12 C -0.13 -1.66 7.74 31.18 0.24 -1.42 16 13 C -0.12 -2.40 6.99 31.12 0.22 -2.18 16 14 C -0.11 -3.86 5.46 30.62 0.17 -3.69 16 15 C -0.13 -5.23 6.08 30.67 0.19 -5.04 16 16 C 0.18 8.60 5.29 86.36 0.46 9.06 16 17 N -0.60 -29.76 2.99 -675.22 -2.02 -31.78 16 18 C -0.26 -13.81 8.59 84.03 0.72 -13.09 16 19 H 0.07 3.73 6.24 -2.91 -0.02 3.71 16 20 C -0.05 -2.55 4.92 84.86 0.42 -2.14 16 21 N -0.93 -54.67 11.25 21.65 0.24 -54.43 16 22 Si 0.96 45.04 29.58 68.60 2.03 47.07 16 23 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 24 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 25 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 26 H 0.04 1.51 7.41 -2.39 -0.02 1.49 16 27 H 0.05 1.94 7.67 -2.39 -0.02 1.92 16 28 H 0.08 2.15 7.78 -2.39 -0.02 2.13 16 29 H 0.41 8.91 7.59 -92.70 -0.70 8.20 16 30 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.09 0.82 7.34 -2.39 -0.02 0.81 16 32 H 0.07 0.87 7.11 -2.39 -0.02 0.85 16 33 H 0.07 1.33 8.09 -2.39 -0.02 1.31 16 34 H 0.10 1.13 8.10 -2.39 -0.02 1.11 16 35 H 0.11 0.93 7.64 -2.39 -0.02 0.91 16 36 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.08 1.35 8.10 -2.39 -0.02 1.34 16 38 H 0.06 1.65 7.45 -2.39 -0.02 1.63 16 39 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 40 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 41 H 0.07 2.58 8.14 -2.38 -0.02 2.57 16 42 H 0.04 1.80 8.14 -2.38 -0.02 1.78 16 43 H 0.01 0.27 8.14 -2.39 -0.02 0.26 16 44 H 0.05 2.95 6.14 -2.39 -0.01 2.93 16 45 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 Total: -1.00 -68.04 345.11 3.10 -64.94 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: 0.26 Total: 18.42 kcal Atomic # 6 Polarization: -4.15 SS G_CDS: 4.61 Total: 0.46 kcal Atomic # 7 Polarization: -104.07 SS G_CDS: -3.74 Total: -107.82 kcal Atomic # 8 Polarization: -23.03 SS G_CDS: -0.05 Total: -23.08 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -68.04 3.10 -64.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993671734.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.157 kcal (2) G-P(sol) polarization free energy of solvation -68.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds