Wall clock time and date at job start Tue Mar 31 2020 02:12:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08992 * 109.70324 * 2 1 4 4 C 1.53622 * 109.66607 * 120.59786 * 2 1 3 5 5 H 1.08997 * 109.66210 * 54.53329 * 4 2 1 6 6 N 1.46507 * 109.42906 * 294.41809 * 4 2 1 7 7 C 1.34776 * 120.00008 * 155.28913 * 6 4 2 8 8 O 1.21278 * 120.00359 * 359.97438 * 7 6 4 9 9 C 1.50705 * 119.99731 * 179.97438 * 7 6 4 10 10 C 1.52998 * 112.84475 * 48.80634 * 9 7 6 11 11 C 1.53778 * 113.61750 * 277.49786 * 9 7 6 12 12 C 1.53779 * 87.07985 * 220.02183 * 11 9 7 13 13 C 1.53779 * 113.61065 * 179.97438 * 9 7 6 14 14 C 1.53035 * 109.24528 * 174.54846 * 4 2 1 15 15 C 1.53044 * 109.53792 * 298.50823 * 14 4 2 16 16 C 1.53197 * 109.30848 * 61.36279 * 15 14 4 17 17 N 1.46921 * 109.58384 * 239.64578 * 2 1 3 18 18 C 1.36936 * 120.63442 * 6.62826 * 17 2 1 19 19 H 1.08003 * 119.99994 * 330.18231 * 18 17 2 20 20 C 1.38813 * 120.00464 * 149.90402 * 18 17 2 21 21 N 1.31620 * 119.99954 * 344.28313 * 20 18 17 22 22 Si 1.86801 * 120.00035 * 164.27859 * 20 18 17 23 23 H 1.48495 * 109.46936 * 94.04066 * 22 20 18 24 24 H 1.48501 * 109.46979 * 214.04149 * 22 20 18 25 25 H 1.48493 * 109.47176 * 334.03908 * 22 20 18 26 26 H 1.09000 * 109.47299 * 180.35617 * 1 2 3 27 27 H 1.09003 * 109.46795 * 300.35503 * 1 2 3 28 28 H 1.09001 * 109.47003 * 60.35108 * 1 2 3 29 29 H 0.96996 * 119.99606 * 335.28489 * 6 4 2 30 30 H 1.09003 * 109.47181 * 69.66828 * 10 9 7 31 31 H 1.09006 * 109.46593 * 189.66229 * 10 9 7 32 32 H 1.08992 * 109.47804 * 309.66223 * 10 9 7 33 33 H 1.09004 * 113.61180 * 334.56731 * 11 9 7 34 34 H 1.09002 * 113.61592 * 105.47019 * 11 9 7 35 35 H 1.08996 * 113.61267 * 270.88337 * 12 11 9 36 36 H 1.09004 * 113.68952 * 139.99516 * 12 11 9 37 37 H 1.09000 * 113.61363 * 254.53001 * 13 9 7 38 38 H 1.08997 * 113.61757 * 25.43678 * 13 9 7 39 39 H 1.09002 * 109.46074 * 178.49025 * 14 4 2 40 40 H 1.08997 * 109.44812 * 58.51953 * 14 4 2 41 41 H 1.09000 * 109.49601 * 301.41863 * 15 14 4 42 42 H 1.08999 * 109.49972 * 181.31480 * 15 14 4 43 43 H 1.09004 * 109.58085 * 185.58122 * 16 15 14 44 44 H 1.08992 * 109.58278 * 65.15810 * 16 15 14 45 45 H 0.96999 * 120.00019 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0470 -0.7363 1.2452 5 1 1.6096 -1.7337 1.2895 6 7 1.6732 0.0151 2.4460 7 6 1.5567 -0.6197 3.6292 8 8 1.7608 -1.8131 3.6998 9 6 1.1727 0.1534 4.8645 10 6 -0.0473 1.0510 4.6481 11 6 2.3562 0.8704 5.5352 12 6 1.7438 0.4528 6.8826 13 6 1.0818 -0.7144 6.1308 14 6 3.5712 -0.8499 1.1675 15 6 3.9615 -1.6629 -0.0690 16 6 3.4656 -0.9420 -1.3265 17 7 2.0225 -0.6995 -1.1945 18 6 1.1537 -1.1126 -2.1690 19 1 0.1395 -1.3792 -1.9106 20 6 1.5748 -1.1832 -3.4898 21 7 2.6810 -0.5745 -3.8613 22 14 0.5714 -2.1423 -4.7400 23 1 -0.3622 -1.2214 -5.4367 24 1 1.4830 -2.7670 -5.7320 25 1 -0.2040 -3.2010 -4.0451 26 1 -0.3634 -1.0276 0.0064 27 1 -0.3633 0.5194 0.8868 28 1 -0.3633 0.5084 -0.8931 29 1 1.5096 0.9695 2.3895 30 1 -0.9370 0.4325 4.5293 31 1 -0.1731 1.7068 5.5097 32 1 0.0990 1.6532 3.7515 33 1 3.3208 0.4055 5.3312 34 1 2.3622 1.9484 5.3736 35 1 1.0315 1.1752 7.2810 36 1 2.4817 0.1354 7.6194 37 1 0.0591 -0.9154 6.4498 38 1 1.6977 -1.6127 6.0897 39 1 3.9443 -1.3482 2.0623 40 1 4.0063 0.1471 1.0988 41 1 3.5060 -2.6515 -0.0130 42 1 5.0461 -1.7632 -0.1110 43 1 3.6531 -1.5637 -2.2019 44 1 3.9877 0.0089 -1.4323 45 1 2.9755 -0.6242 -4.7842 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993671737.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:12:00 Heat of formation + Delta-G solvation = -27.680281 kcal Electronic energy + Delta-G solvation = -23347.347643 eV Core-core repulsion = 20171.624699 eV Total energy + Delta-G solvation = -3175.722944 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.65316 -39.85623 -38.34954 -35.87919 -34.28239 -33.42004 -31.38286 -30.05767 -27.87561 -26.91024 -26.55589 -25.74676 -23.75836 -22.35743 -21.74903 -21.15380 -19.50316 -18.30691 -18.07370 -17.34236 -16.71872 -16.22434 -15.91497 -15.68609 -15.50630 -15.34803 -14.91431 -14.58259 -14.39171 -14.22681 -13.65611 -13.35889 -13.35072 -13.16601 -13.08492 -12.80711 -12.73037 -12.51967 -12.39834 -12.18013 -12.09878 -12.01542 -11.81128 -11.78871 -11.62155 -11.38303 -11.19597 -11.15226 -10.54590 -10.48253 -9.97723 -8.65131 -7.86496 -5.32710 1.45411 1.48259 1.57174 1.68624 2.21664 2.54215 3.29231 3.49653 3.58076 3.64523 3.80937 3.88762 3.91759 4.03425 4.10607 4.19584 4.34632 4.50787 4.60789 4.61640 4.71581 4.77046 4.79306 4.87251 4.90576 4.91822 4.95226 5.01661 5.07813 5.11253 5.12196 5.21128 5.22790 5.28485 5.34247 5.44440 5.49203 5.55965 5.61231 5.69667 5.75015 6.41271 6.65685 7.15710 7.34327 7.85824 8.37994 9.20500 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.032534 B = 0.004232 C = 0.004015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.424294 B = 6614.298629 C = 6972.009967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.165 3.835 3 H 0.034 0.966 4 C 0.146 3.854 5 H 0.052 0.948 6 N -0.705 5.705 7 C 0.521 3.479 8 O -0.591 6.591 9 C -0.110 4.110 10 C -0.125 4.125 11 C -0.118 4.118 12 C -0.125 4.125 13 C -0.124 4.124 14 C -0.108 4.108 15 C -0.130 4.130 16 C 0.177 3.823 17 N -0.601 5.601 18 C -0.256 4.256 19 H 0.071 0.929 20 C -0.046 4.046 21 N -0.932 5.932 22 Si 0.960 3.040 23 H -0.284 1.284 24 H -0.294 1.294 25 H -0.274 1.274 26 H 0.038 0.962 27 H 0.076 0.924 28 H 0.049 0.951 29 H 0.411 0.589 30 H 0.058 0.942 31 H 0.093 0.907 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.098 0.902 35 H 0.106 0.894 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.066 0.934 39 H 0.051 0.949 40 H 0.066 0.934 41 H 0.042 0.958 42 H 0.072 0.928 43 H 0.053 0.947 44 H 0.005 0.995 45 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.633 6.676 19.590 20.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.058 3.942 3 H 0.052 0.948 4 C 0.039 3.961 5 H 0.070 0.930 6 N -0.356 5.356 7 C 0.309 3.691 8 O -0.471 6.471 9 C -0.113 4.113 10 C -0.182 4.182 11 C -0.156 4.156 12 C -0.162 4.162 13 C -0.162 4.162 14 C -0.147 4.147 15 C -0.170 4.170 16 C 0.052 3.948 17 N -0.324 5.324 18 C -0.386 4.386 19 H 0.088 0.912 20 C -0.242 4.242 21 N -0.578 5.578 22 Si 0.789 3.211 23 H -0.210 1.210 24 H -0.220 1.220 25 H -0.199 1.199 26 H 0.057 0.943 27 H 0.094 0.906 28 H 0.068 0.932 29 H 0.247 0.753 30 H 0.077 0.923 31 H 0.112 0.888 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.116 0.884 35 H 0.124 0.876 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.084 0.916 39 H 0.070 0.930 40 H 0.085 0.915 41 H 0.061 0.939 42 H 0.091 0.909 43 H 0.072 0.928 44 H 0.023 0.977 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -2.445 5.846 19.457 20.462 hybrid contribution -0.152 -0.494 -1.421 1.512 sum -2.597 5.352 18.035 18.991 Atomic orbital electron populations 1.21715 0.94421 1.00931 1.01324 1.20807 0.94299 0.93373 0.85694 0.94834 1.21364 0.94698 0.95463 0.84590 0.92955 1.45972 1.69626 1.12735 1.07243 1.21158 0.75385 0.87373 0.85166 1.90653 1.52620 1.17506 1.86351 1.22303 0.99835 0.98343 0.90812 1.21634 0.94124 0.98477 1.03964 1.22917 0.95427 1.01318 0.95932 1.22817 1.00230 0.97414 0.95757 1.22894 1.02039 0.97478 0.93785 1.21667 0.95543 1.00259 0.97183 1.22029 1.00276 0.98712 0.95959 1.20609 0.83233 0.96083 0.94891 1.44282 1.03072 1.65925 1.19165 1.19434 0.95535 1.37028 0.86623 0.91175 1.25760 0.99108 1.00644 0.98662 1.70166 1.25959 1.45078 1.16628 0.85375 0.77980 0.78762 0.79020 1.21045 1.22013 1.19861 0.94314 0.90569 0.93174 0.75266 0.92314 0.88837 0.91018 0.91350 0.88396 0.87572 0.90623 0.90382 0.91559 0.93039 0.91519 0.93937 0.90931 0.92845 0.97672 0.94188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.58 7.84 71.98 0.56 -4.02 16 2 C 0.17 6.57 3.05 45.12 0.14 6.71 16 3 H 0.03 1.32 8.14 -2.39 -0.02 1.31 16 4 C 0.15 5.28 2.02 45.21 0.09 5.38 16 5 H 0.05 2.27 7.58 -2.39 -0.02 2.26 16 6 N -0.71 -19.69 4.49 -441.47 -1.98 -21.67 16 7 C 0.52 15.26 6.89 87.66 0.60 15.86 16 8 O -0.59 -23.06 15.56 -3.02 -0.05 -23.11 16 9 C -0.11 -2.15 1.26 -52.40 -0.07 -2.22 16 10 C -0.12 -1.74 8.98 71.98 0.65 -1.09 16 11 C -0.12 -1.85 7.20 31.12 0.22 -1.62 16 12 C -0.13 -1.64 7.73 31.13 0.24 -1.39 16 13 C -0.12 -2.42 7.00 31.13 0.22 -2.20 16 14 C -0.11 -3.87 5.46 30.62 0.17 -3.71 16 15 C -0.13 -5.23 6.08 30.67 0.19 -5.05 16 16 C 0.18 8.63 5.28 86.36 0.46 9.09 16 17 N -0.60 -29.79 2.98 -674.43 -2.01 -31.80 16 18 C -0.26 -13.87 8.57 84.03 0.72 -13.15 16 19 H 0.07 3.72 6.24 -2.91 -0.02 3.70 16 20 C -0.05 -2.56 4.93 84.86 0.42 -2.14 16 21 N -0.93 -54.65 11.25 21.65 0.24 -54.40 16 22 Si 0.96 44.99 29.58 68.60 2.03 47.02 16 23 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 24 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 25 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 26 H 0.04 1.51 7.44 -2.39 -0.02 1.49 16 27 H 0.08 2.14 7.82 -2.39 -0.02 2.12 16 28 H 0.05 1.94 7.63 -2.39 -0.02 1.93 16 29 H 0.41 8.93 7.50 -92.71 -0.70 8.23 16 30 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.09 0.85 7.34 -2.38 -0.02 0.83 16 32 H 0.07 0.89 7.04 -2.39 -0.02 0.87 16 33 H 0.07 1.30 8.09 -2.38 -0.02 1.28 16 34 H 0.10 1.10 8.10 -2.39 -0.02 1.08 16 35 H 0.11 0.92 7.64 -2.39 -0.02 0.90 16 36 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.08 1.36 8.10 -2.39 -0.02 1.34 16 38 H 0.07 1.66 7.43 -2.39 -0.02 1.64 16 39 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 41 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 43 H 0.05 2.94 6.15 -2.38 -0.01 2.93 16 44 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 45 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 Total: -1.00 -68.06 345.01 3.11 -64.95 By element: Atomic # 1 Polarization: 18.30 SS G_CDS: 0.26 Total: 18.56 kcal Atomic # 6 Polarization: -4.16 SS G_CDS: 4.61 Total: 0.45 kcal Atomic # 7 Polarization: -104.12 SS G_CDS: -3.75 Total: -107.87 kcal Atomic # 8 Polarization: -23.06 SS G_CDS: -0.05 Total: -23.11 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -68.06 3.11 -64.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993671737.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.268 kcal (2) G-P(sol) polarization free energy of solvation -68.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds