Wall clock time and date at job start Tue Mar 31 2020 02:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.50701 * 109.47419 * 239.99925 * 2 1 3 5 5 O 1.21280 * 119.99781 * 240.00479 * 4 2 1 6 6 N 1.34780 * 119.99795 * 59.99803 * 4 2 1 7 7 C 1.47417 * 125.64725 * 359.70014 * 6 4 2 8 8 C 1.55132 * 104.71956 * 155.81666 * 7 6 4 9 9 H 1.09003 * 111.18924 * 279.18444 * 8 7 6 10 10 N 1.46502 * 110.90297 * 155.27242 * 8 7 6 11 11 C 1.36942 * 120.00270 * 92.97789 * 10 8 7 12 12 H 1.07997 * 119.99392 * 359.97438 * 11 10 8 13 13 C 1.38806 * 120.00193 * 179.97438 * 11 10 8 14 14 N 1.31617 * 120.00081 * 179.97438 * 13 11 10 15 15 Si 1.86798 * 119.99961 * 359.97438 * 13 11 10 16 16 H 1.48496 * 109.47242 * 90.00068 * 15 13 11 17 17 H 1.48505 * 109.47277 * 210.00060 * 15 13 11 18 18 H 1.48496 * 109.47348 * 329.99722 * 15 13 11 19 19 C 1.55154 * 101.48912 * 37.29182 * 8 7 6 20 20 C 1.52999 * 110.72053 * 205.97320 * 19 8 7 21 21 C 1.52993 * 110.87372 * 82.77017 * 19 8 7 22 22 C 1.47020 * 125.64476 * 179.97438 * 6 4 2 23 23 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 24 24 C 1.53001 * 117.50135 * 248.74637 * 23 2 1 25 25 C 1.53000 * 117.49905 * 180.08647 * 23 2 1 26 26 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 28 28 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 29 29 H 1.09004 * 110.36484 * 274.73852 * 7 6 4 30 30 H 1.08995 * 110.37495 * 37.06136 * 7 6 4 31 31 H 0.97005 * 120.00025 * 272.96767 * 10 8 7 32 32 H 0.97002 * 119.99993 * 180.02562 * 14 13 11 33 33 H 1.08994 * 109.47298 * 174.97601 * 20 19 8 34 34 H 1.09004 * 109.46815 * 294.97648 * 20 19 8 35 35 H 1.09005 * 109.47303 * 54.97047 * 20 19 8 36 36 H 1.09002 * 109.47085 * 304.93240 * 21 19 8 37 37 H 1.09000 * 109.47481 * 64.93527 * 21 19 8 38 38 H 1.08997 * 109.47244 * 184.94080 * 21 19 8 39 39 H 1.08998 * 109.88454 * 300.44771 * 22 6 4 40 40 H 1.09006 * 109.88151 * 61.45414 * 22 6 4 41 41 H 1.09006 * 115.55153 * 34.42016 * 23 2 1 42 42 H 1.09002 * 117.49734 * 0.02562 * 24 23 2 43 43 H 1.08994 * 117.49847 * 145.02044 * 24 23 2 44 44 H 1.09001 * 117.49936 * 214.98052 * 25 23 2 45 45 H 1.08998 * 117.50193 * 0.02562 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.7296 -1.6965 -1.1191 6 7 1.7068 -0.2500 -2.4546 7 6 0.8659 0.9283 -2.7336 8 6 1.2942 1.3915 -4.1509 9 1 2.2093 1.9826 -4.1124 10 7 0.2165 2.1379 -4.8048 11 6 0.1694 3.5027 -4.7034 12 1 0.9266 4.0288 -4.1410 13 6 -0.8515 4.2100 -5.3234 14 7 -0.8970 5.5217 -5.2255 15 14 -2.1606 3.3000 -6.2967 16 1 -3.2885 2.9455 -5.3982 17 1 -2.6562 4.1700 -7.3936 18 1 -1.5781 2.0613 -6.8724 19 6 1.5391 0.0329 -4.8592 20 6 2.5445 0.1915 -6.0015 21 6 0.2253 -0.5575 -5.3751 22 6 2.1268 -0.8429 -3.7327 23 6 2.0399 -0.7212 1.2493 24 6 2.7392 0.1231 2.3165 25 6 3.5549 -0.8263 1.4354 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.1886 0.6524 -2.7248 30 1 1.0594 1.7141 -2.0035 31 1 -0.4637 1.6653 -5.3098 32 1 -1.6106 6.0159 -5.6585 33 1 2.7689 -0.7868 -6.4264 34 1 2.1196 0.8338 -6.7729 35 1 3.4611 0.6406 -5.6191 36 1 -0.4862 -0.6343 -4.5528 37 1 -0.1842 0.0898 -6.1506 38 1 0.4102 -1.5486 -5.7891 39 1 3.2148 -0.8505 -3.7981 40 1 1.7437 -1.8603 -3.8130 41 1 1.4318 -1.5595 1.5894 42 1 2.8356 1.1925 2.1288 43 1 2.5914 -0.1598 3.3587 44 1 3.9434 -1.7335 1.8983 45 1 4.1884 -0.3813 0.6681 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000995622527.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:05 Heat of formation + Delta-G solvation = -0.405294 kcal Electronic energy + Delta-G solvation = -23257.476023 eV Core-core repulsion = 20082.935812 eV Total energy + Delta-G solvation = -3174.540211 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.35224 -38.57992 -36.75496 -34.32423 -33.53030 -31.95827 -31.15783 -27.98660 -27.19843 -26.39794 -24.66314 -23.61968 -22.33371 -21.60581 -20.83736 -19.02364 -18.70915 -17.70260 -16.71010 -15.89882 -15.79345 -14.89813 -14.70003 -14.43893 -14.27172 -13.87965 -13.62974 -13.31202 -13.09635 -12.84911 -12.46926 -12.32536 -12.18332 -12.04036 -11.79421 -11.62702 -11.49368 -11.41487 -11.35943 -11.07220 -11.00169 -10.61270 -10.57215 -10.41853 -10.34911 -10.07796 -9.99963 -9.65537 -9.43392 -9.05035 -8.36513 -7.41789 -5.88463 -3.26071 2.84918 3.13742 3.27988 3.30606 3.37918 3.87769 4.47923 4.53677 4.56516 4.82590 4.87131 4.93970 5.00883 5.06731 5.20431 5.27201 5.36043 5.41341 5.49962 5.57161 5.62219 5.63275 5.69676 5.73855 5.84071 5.85977 5.91671 5.93200 5.98181 6.03649 6.08030 6.12938 6.17000 6.19500 6.27367 6.33410 6.43772 6.48346 6.57746 6.71435 7.77584 7.86638 8.30255 8.39353 9.07309 9.79307 9.97884 11.29265 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.019578 B = 0.005029 C = 0.004409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.851252 B = 5566.382575 C = 6348.487817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.076 4.076 3 H 0.096 0.904 4 C 0.530 3.470 5 O -0.546 6.546 6 N -0.613 5.613 7 C 0.073 3.927 8 C 0.186 3.814 9 H 0.077 0.923 10 N -0.734 5.734 11 C -0.252 4.252 12 H 0.092 0.908 13 C 0.011 3.989 14 N -0.929 5.929 15 Si 0.879 3.121 16 H -0.283 1.283 17 H -0.290 1.290 18 H -0.276 1.276 19 C -0.091 4.091 20 C -0.129 4.129 21 C -0.138 4.138 22 C 0.122 3.878 23 C -0.132 4.132 24 C -0.185 4.185 25 C -0.156 4.156 26 H 0.057 0.943 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.366 0.634 32 H 0.261 0.739 33 H 0.050 0.950 34 H 0.066 0.934 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.064 0.936 38 H 0.053 0.947 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.104 0.896 42 H 0.093 0.907 43 H 0.092 0.908 44 H 0.091 0.909 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.526 -12.511 7.825 15.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.097 4.097 3 H 0.114 0.886 4 C 0.319 3.681 5 O -0.423 6.423 6 N -0.347 5.347 7 C -0.053 4.053 8 C 0.074 3.926 9 H 0.095 0.905 10 N -0.377 5.377 11 C -0.382 4.382 12 H 0.110 0.890 13 C -0.185 4.185 14 N -0.575 5.575 15 Si 0.709 3.291 16 H -0.209 1.209 17 H -0.216 1.216 18 H -0.202 1.202 19 C -0.093 4.093 20 C -0.187 4.187 21 C -0.195 4.195 22 C -0.001 4.001 23 C -0.150 4.150 24 C -0.222 4.222 25 C -0.193 4.193 26 H 0.076 0.924 27 H 0.086 0.914 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.202 0.798 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.083 0.917 38 H 0.072 0.928 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.122 0.878 42 H 0.112 0.888 43 H 0.111 0.889 44 H 0.110 0.890 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 4.942 -12.779 7.978 15.854 hybrid contribution -1.130 -0.448 -0.700 1.403 sum 3.811 -13.226 7.277 15.570 Atomic orbital electron populations 1.21898 0.92566 1.02614 1.03603 1.20822 0.97703 0.99879 0.91321 0.88576 1.20295 0.80039 0.84408 0.83358 1.90657 1.38689 1.26668 1.86325 1.48487 1.51063 1.30201 1.04959 1.23534 0.94485 0.86171 1.01080 1.21374 0.92651 0.89972 0.88622 0.90511 1.42763 1.29166 1.04509 1.61217 1.19077 1.09933 0.80735 1.28443 0.89028 1.24650 0.98525 0.95191 1.00144 1.69691 1.34589 1.05056 1.48191 0.86657 0.82830 0.79187 0.80430 1.20913 1.21577 1.20215 1.21907 0.96151 0.96501 0.94705 1.21695 0.98083 1.01208 0.97718 1.21766 0.96343 1.00051 1.01339 1.21980 0.99254 0.96588 0.82303 1.21925 0.95964 1.01346 0.95810 1.23105 1.05246 0.97694 0.96113 1.22766 0.93685 1.00923 1.01948 0.92425 0.91409 0.90770 0.91186 0.90771 0.79832 0.92891 0.93081 0.91530 0.92532 0.92518 0.91695 0.92783 0.91677 0.91971 0.87755 0.88817 0.88910 0.89048 0.89037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 8.98 37.16 0.33 -1.40 16 2 C -0.08 -0.97 2.23 -91.77 -0.20 -1.17 16 3 H 0.10 1.18 7.61 -51.93 -0.40 0.79 16 4 C 0.53 8.20 7.09 -10.98 -0.08 8.12 16 5 O -0.55 -9.83 15.42 5.56 0.09 -9.74 16 6 N -0.61 -9.26 3.32 -170.38 -0.57 -9.83 16 7 C 0.07 1.15 4.51 -2.41 -0.01 1.14 16 8 C 0.19 3.25 2.97 -65.66 -0.20 3.05 16 9 H 0.08 1.42 7.99 -51.93 -0.41 1.00 16 10 N -0.73 -15.63 4.95 -51.23 -0.25 -15.88 16 11 C -0.25 -6.55 10.44 -15.06 -0.16 -6.71 16 12 H 0.09 2.56 8.06 -52.49 -0.42 2.14 16 13 C 0.01 0.32 5.50 -17.43 -0.10 0.22 16 14 N -0.93 -27.76 13.97 55.49 0.78 -26.98 16 15 Si 0.88 20.79 27.73 -169.99 -4.71 16.07 16 16 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 17 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 18 H -0.28 -6.07 6.52 56.52 0.37 -5.70 16 19 C -0.09 -1.33 0.85 -152.68 -0.13 -1.46 16 20 C -0.13 -1.75 8.48 37.16 0.32 -1.43 16 21 C -0.14 -1.96 7.55 37.15 0.28 -1.68 16 22 C 0.12 1.76 6.04 -3.07 -0.02 1.74 16 23 C -0.13 -1.56 4.72 -90.62 -0.43 -1.99 16 24 C -0.18 -1.86 10.18 -26.69 -0.27 -2.14 16 25 C -0.16 -1.85 8.98 -26.69 -0.24 -2.09 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.07 0.92 4.98 -51.93 -0.26 0.66 16 29 H 0.07 1.12 6.65 -51.93 -0.35 0.77 16 30 H 0.07 1.16 7.34 -51.93 -0.38 0.78 16 31 H 0.37 7.70 3.32 -40.82 -0.14 7.56 16 32 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 33 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 36 H 0.06 0.82 7.44 -51.93 -0.39 0.43 16 37 H 0.06 1.02 6.76 -51.93 -0.35 0.66 16 38 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.93 7.82 -51.93 -0.41 0.53 16 40 H 0.06 0.88 7.85 -51.93 -0.41 0.48 16 41 H 0.10 1.21 8.11 -51.93 -0.42 0.79 16 42 H 0.09 0.91 8.05 -51.93 -0.42 0.49 16 43 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 44 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.09 1.19 8.10 -51.93 -0.42 0.77 16 LS Contribution 348.17 15.07 5.25 5.25 Total: -1.00 -29.71 348.17 -8.04 -37.75 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: -7.71 Total: 9.16 kcal Atomic # 6 Polarization: -4.90 SS G_CDS: -0.90 Total: -5.80 kcal Atomic # 7 Polarization: -52.65 SS G_CDS: -0.04 Total: -52.69 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.09 Total: -9.74 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -4.71 Total: 16.07 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -29.71 -8.04 -37.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995622527.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.349 kcal (2) G-P(sol) polarization free energy of solvation -29.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds