Wall clock time and date at job start Tue Mar 31 2020 02:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.50701 * 109.47419 * 239.99925 * 2 1 3 5 5 O 1.21280 * 119.99781 * 240.00479 * 4 2 1 6 6 N 1.34780 * 119.99795 * 59.99803 * 4 2 1 7 7 C 1.47417 * 125.64725 * 359.70014 * 6 4 2 8 8 C 1.55132 * 104.71956 * 155.81666 * 7 6 4 9 9 H 1.09003 * 111.18924 * 279.18444 * 8 7 6 10 10 N 1.46502 * 110.90297 * 155.27242 * 8 7 6 11 11 C 1.36942 * 120.00270 * 92.97789 * 10 8 7 12 12 H 1.07997 * 119.99392 * 359.97438 * 11 10 8 13 13 C 1.38806 * 120.00193 * 179.97438 * 11 10 8 14 14 N 1.31617 * 120.00081 * 179.97438 * 13 11 10 15 15 Si 1.86798 * 119.99961 * 359.97438 * 13 11 10 16 16 H 1.48496 * 109.47242 * 90.00068 * 15 13 11 17 17 H 1.48505 * 109.47277 * 210.00060 * 15 13 11 18 18 H 1.48496 * 109.47348 * 329.99722 * 15 13 11 19 19 C 1.55154 * 101.48912 * 37.29182 * 8 7 6 20 20 C 1.52999 * 110.72053 * 205.97320 * 19 8 7 21 21 C 1.52993 * 110.87372 * 82.77017 * 19 8 7 22 22 C 1.47020 * 125.64476 * 179.97438 * 6 4 2 23 23 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 24 24 C 1.53001 * 117.50135 * 248.74637 * 23 2 1 25 25 C 1.53000 * 117.49905 * 180.08647 * 23 2 1 26 26 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 28 28 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 29 29 H 1.09004 * 110.36484 * 274.73852 * 7 6 4 30 30 H 1.08995 * 110.37495 * 37.06136 * 7 6 4 31 31 H 0.97005 * 120.00025 * 272.96767 * 10 8 7 32 32 H 0.97002 * 119.99993 * 180.02562 * 14 13 11 33 33 H 1.08994 * 109.47298 * 174.97601 * 20 19 8 34 34 H 1.09004 * 109.46815 * 294.97648 * 20 19 8 35 35 H 1.09005 * 109.47303 * 54.97047 * 20 19 8 36 36 H 1.09002 * 109.47085 * 304.93240 * 21 19 8 37 37 H 1.09000 * 109.47481 * 64.93527 * 21 19 8 38 38 H 1.08997 * 109.47244 * 184.94080 * 21 19 8 39 39 H 1.08998 * 109.88454 * 300.44771 * 22 6 4 40 40 H 1.09006 * 109.88151 * 61.45414 * 22 6 4 41 41 H 1.09006 * 115.55153 * 34.42016 * 23 2 1 42 42 H 1.09002 * 117.49734 * 0.02562 * 24 23 2 43 43 H 1.08994 * 117.49847 * 145.02044 * 24 23 2 44 44 H 1.09001 * 117.49936 * 214.98052 * 25 23 2 45 45 H 1.08998 * 117.50193 * 0.02562 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.7296 -1.6965 -1.1191 6 7 1.7068 -0.2500 -2.4546 7 6 0.8659 0.9283 -2.7336 8 6 1.2942 1.3915 -4.1509 9 1 2.2093 1.9826 -4.1124 10 7 0.2165 2.1379 -4.8048 11 6 0.1694 3.5027 -4.7034 12 1 0.9266 4.0288 -4.1410 13 6 -0.8515 4.2100 -5.3234 14 7 -0.8970 5.5217 -5.2255 15 14 -2.1606 3.3000 -6.2967 16 1 -3.2885 2.9455 -5.3982 17 1 -2.6562 4.1700 -7.3936 18 1 -1.5781 2.0613 -6.8724 19 6 1.5391 0.0329 -4.8592 20 6 2.5445 0.1915 -6.0015 21 6 0.2253 -0.5575 -5.3751 22 6 2.1268 -0.8429 -3.7327 23 6 2.0399 -0.7212 1.2493 24 6 2.7392 0.1231 2.3165 25 6 3.5549 -0.8263 1.4354 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.1886 0.6524 -2.7248 30 1 1.0594 1.7141 -2.0035 31 1 -0.4637 1.6653 -5.3098 32 1 -1.6106 6.0159 -5.6585 33 1 2.7689 -0.7868 -6.4264 34 1 2.1196 0.8338 -6.7729 35 1 3.4611 0.6406 -5.6191 36 1 -0.4862 -0.6343 -4.5528 37 1 -0.1842 0.0898 -6.1506 38 1 0.4102 -1.5486 -5.7891 39 1 3.2148 -0.8505 -3.7981 40 1 1.7437 -1.8603 -3.8130 41 1 1.4318 -1.5595 1.5894 42 1 2.8356 1.1925 2.1288 43 1 2.5914 -0.1598 3.3587 44 1 3.9434 -1.7335 1.8983 45 1 4.1884 -0.3813 0.6681 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000995622527.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:04 Heat of formation + Delta-G solvation = -17.437456 kcal Electronic energy + Delta-G solvation = -23258.214593 eV Core-core repulsion = 20082.935812 eV Total energy + Delta-G solvation = -3175.278781 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.58468 -39.78805 -37.81991 -35.97433 -34.88757 -33.20992 -32.83675 -29.51318 -28.33097 -27.55337 -25.89113 -25.19201 -23.21082 -22.95884 -21.97771 -20.49304 -19.90690 -19.41990 -17.91639 -17.18722 -17.01241 -16.34013 -16.02908 -15.65179 -15.55490 -15.19336 -14.97792 -14.65951 -14.48030 -14.27757 -13.68067 -13.59979 -13.31169 -13.20657 -13.07311 -12.96971 -12.80256 -12.66775 -12.61349 -12.34764 -12.14880 -12.00925 -11.92752 -11.86183 -11.64916 -11.39234 -11.31823 -10.99438 -10.92137 -10.57881 -9.67709 -9.28705 -7.99761 -5.34358 1.40079 1.42600 1.49770 1.62910 1.95546 2.50198 2.92322 3.29505 3.34705 3.59989 3.62964 3.77197 3.78602 3.93264 3.98859 4.17066 4.20730 4.23949 4.33971 4.35302 4.40848 4.56489 4.66817 4.74250 4.80408 4.81484 4.82434 4.86842 4.92900 4.99011 5.02394 5.05662 5.11804 5.14803 5.20056 5.27059 5.29563 5.33729 5.38974 5.46399 5.80091 6.23609 6.53121 7.08961 7.16563 7.83111 8.03099 9.21268 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.019578 B = 0.005029 C = 0.004409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.851252 B = 5566.382575 C = 6348.487817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.074 4.074 3 H 0.099 0.901 4 C 0.527 3.473 5 O -0.572 6.572 6 N -0.613 5.613 7 C 0.087 3.913 8 C 0.176 3.824 9 H 0.062 0.938 10 N -0.733 5.733 11 C -0.229 4.229 12 H 0.061 0.939 13 C -0.055 4.055 14 N -0.981 5.981 15 Si 0.942 3.058 16 H -0.277 1.277 17 H -0.300 1.300 18 H -0.248 1.248 19 C -0.081 4.081 20 C -0.128 4.128 21 C -0.137 4.137 22 C 0.123 3.877 23 C -0.143 4.143 24 C -0.163 4.163 25 C -0.170 4.170 26 H 0.058 0.942 27 H 0.084 0.916 28 H 0.063 0.937 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.371 0.629 32 H 0.257 0.743 33 H 0.076 0.924 34 H 0.052 0.948 35 H 0.055 0.945 36 H 0.054 0.946 37 H 0.052 0.948 38 H 0.079 0.921 39 H 0.066 0.934 40 H 0.071 0.929 41 H 0.108 0.892 42 H 0.098 0.902 43 H 0.112 0.888 44 H 0.096 0.904 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.082 -14.661 8.193 17.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.095 4.095 3 H 0.117 0.883 4 C 0.317 3.683 5 O -0.452 6.452 6 N -0.346 5.346 7 C -0.039 4.039 8 C 0.065 3.935 9 H 0.080 0.920 10 N -0.377 5.377 11 C -0.360 4.360 12 H 0.079 0.921 13 C -0.247 4.247 14 N -0.631 5.631 15 Si 0.769 3.231 16 H -0.204 1.204 17 H -0.227 1.227 18 H -0.173 1.173 19 C -0.082 4.082 20 C -0.185 4.185 21 C -0.194 4.194 22 C 0.000 4.000 23 C -0.161 4.161 24 C -0.200 4.200 25 C -0.207 4.207 26 H 0.077 0.923 27 H 0.103 0.897 28 H 0.082 0.918 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.207 0.793 32 H 0.066 0.934 33 H 0.095 0.905 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.098 0.902 39 H 0.085 0.915 40 H 0.089 0.911 41 H 0.126 0.874 42 H 0.116 0.884 43 H 0.131 0.869 44 H 0.114 0.886 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.525 -14.989 8.356 17.748 hybrid contribution -0.858 0.199 -0.753 1.159 sum 3.667 -14.790 7.604 17.029 Atomic orbital electron populations 1.21863 0.91530 1.02812 1.03942 1.20859 0.98474 0.99673 0.90469 0.88330 1.20806 0.79427 0.84123 0.83949 1.90643 1.39882 1.27956 1.86672 1.48505 1.50839 1.29837 1.05396 1.23235 0.94649 0.86407 0.99615 1.21517 0.90967 0.91079 0.89923 0.91960 1.42652 1.30338 1.02882 1.61826 1.19012 1.08167 0.82704 1.26143 0.92144 1.25378 1.01281 0.95850 1.02186 1.69867 1.35818 1.07045 1.50369 0.85622 0.80037 0.78730 0.78670 1.20351 1.22697 1.17277 1.21844 0.97062 0.94330 0.94997 1.21688 0.97558 1.02399 0.96869 1.21771 0.95601 1.01113 1.00935 1.22018 0.99391 0.96825 0.81762 1.21967 0.95850 1.02136 0.96153 1.23176 1.02692 0.97536 0.96565 1.22751 0.93566 1.01873 1.02503 0.92272 0.89675 0.91777 0.90849 0.90983 0.79275 0.93405 0.90529 0.92915 0.92549 0.92691 0.92925 0.90193 0.91532 0.91087 0.87395 0.88363 0.86948 0.88583 0.90740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 8.98 71.98 0.65 -2.43 16 2 C -0.07 -1.77 2.23 -11.54 -0.03 -1.80 16 3 H 0.10 2.31 7.61 -2.39 -0.02 2.29 16 4 C 0.53 15.69 7.09 87.66 0.62 16.31 16 5 O -0.57 -20.06 15.42 -3.03 -0.05 -20.11 16 6 N -0.61 -17.67 3.32 -811.36 -2.69 -20.36 16 7 C 0.09 2.63 4.51 86.93 0.39 3.03 16 8 C 0.18 5.99 2.97 46.46 0.14 6.13 16 9 H 0.06 2.31 7.99 -2.39 -0.02 2.29 16 10 N -0.73 -30.61 4.95 -316.01 -1.56 -32.18 16 11 C -0.23 -12.04 10.44 84.03 0.88 -11.16 16 12 H 0.06 3.50 8.06 -2.91 -0.02 3.48 16 13 C -0.06 -3.06 5.50 84.86 0.47 -2.59 16 14 N -0.98 -60.21 13.97 21.65 0.30 -59.91 16 15 Si 0.94 42.62 27.73 68.60 1.90 44.53 16 16 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 17 H -0.30 -14.04 7.11 99.48 0.71 -13.34 16 18 H -0.25 -9.96 6.52 99.48 0.65 -9.31 16 19 C -0.08 -2.21 0.85 -51.00 -0.04 -2.25 16 20 C -0.13 -3.19 8.48 71.98 0.61 -2.57 16 21 C -0.14 -3.50 7.55 71.98 0.54 -2.95 16 22 C 0.12 3.29 6.04 86.73 0.52 3.82 16 23 C -0.14 -3.14 4.72 -10.79 -0.05 -3.19 16 24 C -0.16 -2.93 10.18 30.62 0.31 -2.62 16 25 C -0.17 -3.84 8.98 30.62 0.27 -3.57 16 26 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.06 1.49 4.98 -2.39 -0.01 1.48 16 29 H 0.07 2.23 6.65 -2.38 -0.02 2.21 16 30 H 0.07 2.22 7.34 -2.39 -0.02 2.20 16 31 H 0.37 14.88 3.32 -92.70 -0.31 14.57 16 32 H 0.26 15.15 8.31 -92.71 -0.77 14.37 16 33 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 35 H 0.06 1.39 8.13 -2.38 -0.02 1.37 16 36 H 0.05 1.42 7.44 -2.39 -0.02 1.40 16 37 H 0.05 1.49 6.76 -2.39 -0.02 1.47 16 38 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.07 1.79 7.82 -2.39 -0.02 1.77 16 40 H 0.07 1.82 7.85 -2.38 -0.02 1.80 16 41 H 0.11 2.30 8.11 -2.38 -0.02 2.28 16 42 H 0.10 1.69 8.05 -2.39 -0.02 1.67 16 43 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 45 H 0.07 1.92 8.10 -2.39 -0.02 1.90 16 Total: -1.00 -64.36 348.17 3.78 -60.58 By element: Atomic # 1 Polarization: 32.70 SS G_CDS: 0.59 Total: 33.29 kcal Atomic # 6 Polarization: -11.14 SS G_CDS: 5.29 Total: -5.85 kcal Atomic # 7 Polarization: -108.49 SS G_CDS: -3.96 Total: -112.44 kcal Atomic # 8 Polarization: -20.06 SS G_CDS: -0.05 Total: -20.11 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 1.90 Total: 44.53 kcal Total: -64.36 3.78 -60.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995622527.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.146 kcal (2) G-P(sol) polarization free energy of solvation -64.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds