Wall clock time and date at job start Tue Mar 31 2020 02:11:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 110.53944 * 2 1 4 4 C 1.54896 * 110.48503 * 122.60695 * 2 1 3 5 5 C 1.54895 * 102.74587 * 156.62246 * 4 2 1 6 6 C 1.54262 * 104.19594 * 322.05775 * 5 4 2 7 7 C 1.53876 * 106.60218 * 23.61142 * 6 5 4 8 8 H 1.08997 * 110.03586 * 240.66600 * 7 6 5 9 9 C 1.52999 * 110.03048 * 119.27930 * 7 6 5 10 10 C 1.50702 * 109.46961 * 66.46293 * 9 7 6 11 11 O 1.21280 * 120.00011 * 359.97438 * 10 9 7 12 12 N 1.34780 * 119.99677 * 179.97438 * 10 9 7 13 13 C 1.46500 * 119.99481 * 179.97438 * 12 10 9 14 14 H 1.09002 * 112.90957 * 336.24342 * 13 12 10 15 15 C 1.53953 * 113.66887 * 107.44070 * 13 12 10 16 16 C 1.53778 * 87.02238 * 139.93022 * 15 13 12 17 17 H 1.09001 * 113.61993 * 89.23113 * 16 15 13 18 18 N 1.46506 * 113.61561 * 220.05113 * 16 15 13 19 19 C 1.36938 * 119.99589 * 254.13737 * 18 16 15 20 20 H 1.07999 * 120.00325 * 359.97438 * 19 18 16 21 21 C 1.38815 * 119.99408 * 179.97438 * 19 18 16 22 22 N 1.31619 * 119.99480 * 179.97438 * 21 19 18 23 23 Si 1.86794 * 120.00486 * 0.02562 * 21 19 18 24 24 H 1.48498 * 109.47176 * 89.99661 * 23 21 19 25 25 H 1.48498 * 109.47481 * 209.99740 * 23 21 19 26 26 H 1.48501 * 109.46931 * 329.99788 * 23 21 19 27 27 C 1.53781 * 87.17216 * 334.63708 * 16 15 13 28 28 H 1.09004 * 109.47100 * 182.61120 * 1 2 3 29 29 H 1.08998 * 109.47189 * 302.61308 * 1 2 3 30 30 H 1.08999 * 109.46871 * 62.61666 * 1 2 3 31 31 H 1.08997 * 110.75317 * 38.31602 * 4 2 1 32 32 H 1.09000 * 110.91534 * 275.01023 * 4 2 1 33 33 H 1.09003 * 110.48336 * 203.37795 * 5 4 2 34 34 H 1.08999 * 110.59736 * 80.79249 * 5 4 2 35 35 H 1.09003 * 110.03675 * 264.32415 * 6 5 4 36 36 H 1.09005 * 110.07388 * 142.91818 * 6 5 4 37 37 H 1.08998 * 109.47686 * 306.45601 * 9 7 6 38 38 H 1.09009 * 109.46852 * 186.45263 * 9 7 6 39 39 H 0.96993 * 120.00332 * 359.97438 * 12 10 9 40 40 H 1.09004 * 113.61322 * 25.40574 * 15 13 12 41 41 H 1.08997 * 113.66667 * 254.46157 * 15 13 12 42 42 H 0.96995 * 120.00050 * 73.85945 * 18 16 15 43 43 H 0.97000 * 120.00111 * 179.97438 * 22 21 19 44 44 H 1.09002 * 113.61280 * 139.93674 * 27 16 15 45 45 H 1.09002 * 113.61852 * 270.83955 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9124 1.0207 0.0000 4 6 2.0720 -0.7819 1.2223 5 6 3.4907 -1.1979 0.7601 6 6 3.3166 -1.5405 -0.7338 7 6 2.0699 -0.7789 -1.2172 8 1 1.3180 -1.4823 -1.5748 9 6 2.4508 0.1939 -2.3350 10 6 2.8922 -0.5832 -3.5484 11 8 2.9017 -1.7956 -3.5216 12 7 3.2764 0.0693 -4.6634 13 6 3.7060 -0.6861 -5.8428 14 1 4.0648 -1.6860 -5.5987 15 6 2.6868 -0.6631 -6.9964 16 6 3.8871 -0.5213 -7.9473 17 1 4.2962 -1.4754 -8.2796 18 7 3.6539 0.4131 -9.0514 19 6 3.4392 -0.0629 -10.3173 20 1 3.4422 -1.1270 -10.5019 21 6 3.2177 0.8224 -11.3633 22 7 3.0119 0.3649 -12.5801 23 14 3.2133 2.6629 -11.0443 24 1 4.5886 3.1976 -11.2113 25 1 2.3023 3.3303 -12.0085 26 1 2.7455 2.9240 -9.6592 27 6 4.6520 0.0993 -6.7664 28 1 -0.3633 -1.0266 0.0468 29 1 -0.3633 0.5539 0.8656 30 1 -0.3633 0.4727 -0.9125 31 1 1.4581 -1.6600 1.4223 32 1 2.1249 -0.1407 2.1022 33 1 3.8316 -2.0721 1.3149 34 1 4.1915 -0.3721 0.8830 35 1 3.1693 -2.6136 -0.8562 36 1 4.1927 -1.2177 -1.2963 37 1 3.2656 0.8343 -1.9974 38 1 1.5878 0.8085 -2.5914 39 1 3.2684 1.0390 -4.6849 40 1 2.0336 0.2094 -6.9846 41 1 2.1420 -1.5993 -7.1177 42 1 3.6476 1.3686 -8.8850 43 1 2.8568 0.9835 -13.3111 44 1 5.6915 -0.2223 -6.7022 45 1 4.5372 1.1807 -6.6916 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022122329.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:11:29 Heat of formation + Delta-G solvation = -31.890667 kcal Electronic energy + Delta-G solvation = -21792.751038 eV Core-core repulsion = 18616.845519 eV Total energy + Delta-G solvation = -3175.905520 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.22348 -38.88252 -37.69318 -34.17226 -32.78882 -31.62550 -31.49781 -30.40163 -26.68844 -25.24605 -25.06763 -24.06830 -21.92067 -20.89499 -20.34119 -19.74617 -19.35747 -17.50612 -16.79725 -16.38804 -15.90556 -15.26457 -14.90232 -14.65352 -14.43743 -14.04457 -13.93130 -13.42227 -13.18671 -13.06664 -12.71282 -12.61700 -12.18143 -12.06211 -12.05665 -11.77611 -11.28339 -11.15290 -11.04861 -10.93642 -10.84030 -10.80730 -10.76236 -10.56762 -10.49669 -10.29714 -10.11456 -9.67490 -9.55613 -8.96221 -8.78819 -7.30453 -5.80863 -3.16925 2.69501 3.26348 3.33067 3.35533 3.41809 4.27496 4.35708 4.43245 4.54634 4.78872 4.91087 4.99241 5.02322 5.06481 5.12182 5.22478 5.22746 5.27990 5.33221 5.37247 5.40660 5.47123 5.54728 5.61292 5.65748 5.74397 5.75593 5.81537 5.90376 5.94035 6.02141 6.06869 6.08958 6.18269 6.20611 6.28912 6.39633 6.53124 6.65507 6.94513 7.60527 7.95475 8.30573 8.38693 9.15901 9.88204 10.07700 11.37352 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.036317 B = 0.002813 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.800131 B = 9951.289188 C =10236.859539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.094 4.094 3 H 0.074 0.926 4 C -0.120 4.120 5 C -0.128 4.128 6 C -0.109 4.109 7 C -0.071 4.071 8 H 0.081 0.919 9 C -0.136 4.136 10 C 0.509 3.491 11 O -0.541 6.541 12 N -0.718 5.718 13 C 0.118 3.882 14 H 0.111 0.889 15 C -0.176 4.176 16 C 0.174 3.826 17 H 0.087 0.913 18 N -0.735 5.735 19 C -0.248 4.248 20 H 0.092 0.908 21 C 0.004 3.996 22 N -0.932 5.932 23 Si 0.886 3.114 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.278 1.278 27 C -0.161 4.161 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.066 0.934 36 H 0.060 0.940 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.398 0.602 40 H 0.077 0.923 41 H 0.063 0.937 42 H 0.362 0.638 43 H 0.260 0.740 44 H 0.069 0.931 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.799 1.606 28.197 28.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.113 4.113 3 H 0.093 0.907 4 C -0.157 4.157 5 C -0.166 4.166 6 C -0.147 4.147 7 C -0.090 4.090 8 H 0.099 0.901 9 C -0.176 4.176 10 C 0.296 3.704 11 O -0.418 6.418 12 N -0.369 5.369 13 C 0.014 3.986 14 H 0.128 0.872 15 C -0.218 4.218 16 C 0.062 3.938 17 H 0.105 0.895 18 N -0.375 5.375 19 C -0.378 4.378 20 H 0.110 0.890 21 C -0.191 4.191 22 N -0.579 5.579 23 Si 0.716 3.284 24 H -0.210 1.210 25 H -0.217 1.217 26 H -0.204 1.204 27 C -0.201 4.201 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.232 0.768 40 H 0.096 0.904 41 H 0.081 0.919 42 H 0.195 0.805 43 H 0.070 0.930 44 H 0.088 0.912 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.808 0.580 27.948 27.965 hybrid contribution -0.115 1.946 -0.021 1.950 sum -0.923 2.527 27.926 28.056 Atomic orbital electron populations 1.21817 0.94972 1.01924 1.01561 1.22052 0.95497 0.99194 0.94528 0.90724 1.22553 0.96320 0.99726 0.97116 1.22404 0.96866 1.00832 0.96470 1.22096 0.97297 1.00717 0.94580 1.21597 0.98152 0.96145 0.93126 0.90102 1.21849 1.02746 0.99194 0.93847 1.20710 0.76919 0.88589 0.84199 1.90688 1.53510 1.14066 1.83490 1.46094 1.67224 1.10037 1.13504 1.22475 0.96976 0.96585 0.82610 0.87156 1.24320 0.99204 1.02025 0.96272 1.21339 0.92702 0.94224 0.85493 0.89466 1.42706 1.85932 1.03608 1.05239 1.19146 1.41282 0.94458 0.82940 0.89037 1.24705 1.01699 0.97462 0.95283 1.69703 1.55235 1.33660 0.99351 0.86535 0.77668 0.87082 0.77110 1.21033 1.21701 1.20427 1.23860 0.98978 1.00150 0.97134 0.92540 0.92789 0.92625 0.91464 0.91839 0.91928 0.91935 0.91493 0.92119 0.89113 0.89133 0.76836 0.90396 0.91854 0.80504 0.92997 0.91179 0.90251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.12 37.16 0.34 -0.66 16 2 C -0.09 -0.68 2.99 -88.96 -0.27 -0.95 16 3 H 0.07 0.50 7.85 -51.93 -0.41 0.09 16 4 C -0.12 -0.84 6.33 -24.73 -0.16 -0.99 16 5 C -0.13 -0.98 6.83 -25.07 -0.17 -1.15 16 6 C -0.11 -1.06 5.34 -25.61 -0.14 -1.20 16 7 C -0.07 -0.65 2.13 -89.50 -0.19 -0.84 16 8 H 0.08 0.89 7.67 -51.93 -0.40 0.49 16 9 C -0.14 -1.19 4.86 -27.88 -0.14 -1.33 16 10 C 0.51 6.35 7.35 -10.98 -0.08 6.27 16 11 O -0.54 -8.73 14.67 5.56 0.08 -8.65 16 12 N -0.72 -8.54 5.36 -52.93 -0.28 -8.82 16 13 C 0.12 1.69 4.24 -67.03 -0.28 1.40 16 14 H 0.11 1.68 7.47 -51.93 -0.39 1.29 16 15 C -0.18 -2.96 7.69 -25.83 -0.20 -3.16 16 16 C 0.17 3.25 4.47 -67.12 -0.30 2.95 16 17 H 0.09 1.66 8.11 -51.93 -0.42 1.24 16 18 N -0.74 -17.00 5.21 -52.63 -0.27 -17.27 16 19 C -0.25 -6.94 10.45 -15.06 -0.16 -7.10 16 20 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 21 C 0.00 0.13 5.50 -17.43 -0.10 0.03 16 22 N -0.93 -29.14 13.97 55.49 0.78 -28.37 16 23 Si 0.89 21.76 27.74 -169.99 -4.72 17.05 16 24 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 25 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 26 H -0.28 -6.37 6.51 56.52 0.37 -6.00 16 27 C -0.16 -2.35 7.58 -25.92 -0.20 -2.55 16 28 H 0.06 0.40 8.12 -51.93 -0.42 -0.02 16 29 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.48 8.04 -51.93 -0.42 0.06 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.64 7.32 -51.93 -0.38 0.26 16 37 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.09 0.67 8.14 -51.92 -0.42 0.25 16 39 H 0.40 3.75 8.73 -40.82 -0.36 3.40 16 40 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 41 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 42 H 0.36 8.14 5.77 -40.82 -0.24 7.90 16 43 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 44 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 45 H 0.08 1.10 8.09 -51.93 -0.42 0.68 16 LS Contribution 355.64 15.07 5.36 5.36 Total: -1.00 -32.30 355.64 -9.18 -41.48 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -8.09 Total: 8.51 kcal Atomic # 6 Polarization: -7.25 SS G_CDS: -2.03 Total: -9.28 kcal Atomic # 7 Polarization: -54.68 SS G_CDS: 0.22 Total: -54.46 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: 0.08 Total: -8.65 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.72 Total: 17.05 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.30 -9.18 -41.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022122329.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.588 kcal (2) G-P(sol) polarization free energy of solvation -32.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds