Wall clock time and date at job start Tue Mar 31 2020 02:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 110.53944 * 2 1 4 4 C 1.54896 * 110.48503 * 122.60695 * 2 1 3 5 5 C 1.54895 * 102.74587 * 156.62246 * 4 2 1 6 6 C 1.54262 * 104.19594 * 322.05775 * 5 4 2 7 7 C 1.53876 * 106.60218 * 23.61142 * 6 5 4 8 8 H 1.08997 * 110.03586 * 240.66600 * 7 6 5 9 9 C 1.52999 * 110.03048 * 119.27930 * 7 6 5 10 10 C 1.50702 * 109.46961 * 66.46293 * 9 7 6 11 11 O 1.21280 * 120.00011 * 359.97438 * 10 9 7 12 12 N 1.34780 * 119.99677 * 179.97438 * 10 9 7 13 13 C 1.46500 * 119.99481 * 179.97438 * 12 10 9 14 14 H 1.09002 * 112.90957 * 336.24342 * 13 12 10 15 15 C 1.53953 * 113.66887 * 107.44070 * 13 12 10 16 16 C 1.53778 * 87.02238 * 139.93022 * 15 13 12 17 17 H 1.09001 * 113.61993 * 89.23113 * 16 15 13 18 18 N 1.46506 * 113.61561 * 220.05113 * 16 15 13 19 19 C 1.36938 * 119.99589 * 254.13737 * 18 16 15 20 20 H 1.07999 * 120.00325 * 359.97438 * 19 18 16 21 21 C 1.38815 * 119.99408 * 179.97438 * 19 18 16 22 22 N 1.31619 * 119.99480 * 179.97438 * 21 19 18 23 23 Si 1.86794 * 120.00486 * 0.02562 * 21 19 18 24 24 H 1.48498 * 109.47176 * 89.99661 * 23 21 19 25 25 H 1.48498 * 109.47481 * 209.99740 * 23 21 19 26 26 H 1.48501 * 109.46931 * 329.99788 * 23 21 19 27 27 C 1.53781 * 87.17216 * 334.63708 * 16 15 13 28 28 H 1.09004 * 109.47100 * 182.61120 * 1 2 3 29 29 H 1.08998 * 109.47189 * 302.61308 * 1 2 3 30 30 H 1.08999 * 109.46871 * 62.61666 * 1 2 3 31 31 H 1.08997 * 110.75317 * 38.31602 * 4 2 1 32 32 H 1.09000 * 110.91534 * 275.01023 * 4 2 1 33 33 H 1.09003 * 110.48336 * 203.37795 * 5 4 2 34 34 H 1.08999 * 110.59736 * 80.79249 * 5 4 2 35 35 H 1.09003 * 110.03675 * 264.32415 * 6 5 4 36 36 H 1.09005 * 110.07388 * 142.91818 * 6 5 4 37 37 H 1.08998 * 109.47686 * 306.45601 * 9 7 6 38 38 H 1.09009 * 109.46852 * 186.45263 * 9 7 6 39 39 H 0.96993 * 120.00332 * 359.97438 * 12 10 9 40 40 H 1.09004 * 113.61322 * 25.40574 * 15 13 12 41 41 H 1.08997 * 113.66667 * 254.46157 * 15 13 12 42 42 H 0.96995 * 120.00050 * 73.85945 * 18 16 15 43 43 H 0.97000 * 120.00111 * 179.97438 * 22 21 19 44 44 H 1.09002 * 113.61280 * 139.93674 * 27 16 15 45 45 H 1.09002 * 113.61852 * 270.83955 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9124 1.0207 0.0000 4 6 2.0720 -0.7819 1.2223 5 6 3.4907 -1.1979 0.7601 6 6 3.3166 -1.5405 -0.7338 7 6 2.0699 -0.7789 -1.2172 8 1 1.3180 -1.4823 -1.5748 9 6 2.4508 0.1939 -2.3350 10 6 2.8922 -0.5832 -3.5484 11 8 2.9017 -1.7956 -3.5216 12 7 3.2764 0.0693 -4.6634 13 6 3.7060 -0.6861 -5.8428 14 1 4.0648 -1.6860 -5.5987 15 6 2.6868 -0.6631 -6.9964 16 6 3.8871 -0.5213 -7.9473 17 1 4.2962 -1.4754 -8.2796 18 7 3.6539 0.4131 -9.0514 19 6 3.4392 -0.0629 -10.3173 20 1 3.4422 -1.1270 -10.5019 21 6 3.2177 0.8224 -11.3633 22 7 3.0119 0.3649 -12.5801 23 14 3.2133 2.6629 -11.0443 24 1 4.5886 3.1976 -11.2113 25 1 2.3023 3.3303 -12.0085 26 1 2.7455 2.9240 -9.6592 27 6 4.6520 0.0993 -6.7664 28 1 -0.3633 -1.0266 0.0468 29 1 -0.3633 0.5539 0.8656 30 1 -0.3633 0.4727 -0.9125 31 1 1.4581 -1.6600 1.4223 32 1 2.1249 -0.1407 2.1022 33 1 3.8316 -2.0721 1.3149 34 1 4.1915 -0.3721 0.8830 35 1 3.1693 -2.6136 -0.8562 36 1 4.1927 -1.2177 -1.2963 37 1 3.2656 0.8343 -1.9974 38 1 1.5878 0.8085 -2.5914 39 1 3.2684 1.0390 -4.6849 40 1 2.0336 0.2094 -6.9846 41 1 2.1420 -1.5993 -7.1177 42 1 3.6476 1.3686 -8.8850 43 1 2.8568 0.9835 -13.3111 44 1 5.6915 -0.2223 -6.7022 45 1 4.5372 1.1807 -6.6916 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022122329.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:11:28 Heat of formation + Delta-G solvation = -52.704910 kcal Electronic energy + Delta-G solvation = -21793.653612 eV Core-core repulsion = 18616.845519 eV Total energy + Delta-G solvation = -3176.808093 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.23416 -39.90802 -38.72895 -35.83970 -34.26410 -32.72297 -32.11060 -32.00299 -27.50476 -26.57211 -26.26324 -25.27907 -23.39453 -21.71962 -21.31175 -20.91276 -20.29282 -19.43872 -17.80947 -17.56603 -16.78878 -16.40559 -16.04769 -15.93327 -15.56538 -15.37855 -14.70918 -14.68809 -14.51385 -14.05111 -13.80719 -13.68826 -13.57510 -13.33925 -13.11078 -12.86915 -12.73571 -12.31350 -12.12617 -11.92913 -11.87336 -11.78543 -11.71774 -11.64611 -11.54934 -11.41730 -11.39447 -11.29047 -10.93732 -10.65186 -9.94564 -9.28699 -8.02794 -5.36968 1.37652 1.43082 1.50074 1.72136 2.29263 2.48896 3.26815 3.59936 3.61716 3.71069 3.74730 3.81187 3.81579 4.01200 4.14291 4.24994 4.34650 4.41241 4.44335 4.61462 4.67270 4.72054 4.74583 4.81594 4.83556 4.84757 4.88291 4.95695 5.06665 5.11288 5.12862 5.15799 5.20913 5.31740 5.34414 5.39529 5.40116 5.53224 5.63830 5.67973 5.76739 6.21775 6.66957 7.07086 7.36221 7.82573 8.03306 9.18854 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.036317 B = 0.002813 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.800131 B = 9951.289188 C =10236.859539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.088 4.088 3 H 0.091 0.909 4 C -0.119 4.119 5 C -0.124 4.124 6 C -0.110 4.110 7 C -0.072 4.072 8 H 0.055 0.945 9 C -0.128 4.128 10 C 0.505 3.495 11 O -0.583 6.583 12 N -0.709 5.709 13 C 0.135 3.865 14 H 0.100 0.900 15 C -0.172 4.172 16 C 0.151 3.849 17 H 0.073 0.927 18 N -0.737 5.737 19 C -0.237 4.237 20 H 0.053 0.947 21 C -0.069 4.069 22 N -0.986 5.986 23 Si 0.961 3.039 24 H -0.276 1.276 25 H -0.298 1.298 26 H -0.247 1.247 27 C -0.137 4.137 28 H 0.046 0.954 29 H 0.065 0.935 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.079 0.921 33 H 0.062 0.938 34 H 0.074 0.926 35 H 0.041 0.959 36 H 0.050 0.950 37 H 0.118 0.882 38 H 0.112 0.888 39 H 0.414 0.586 40 H 0.079 0.921 41 H 0.047 0.953 42 H 0.369 0.631 43 H 0.258 0.742 44 H 0.085 0.915 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.472 4.661 31.241 31.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.106 4.106 3 H 0.109 0.891 4 C -0.156 4.156 5 C -0.162 4.162 6 C -0.148 4.148 7 C -0.091 4.091 8 H 0.074 0.926 9 C -0.167 4.167 10 C 0.294 3.706 11 O -0.463 6.463 12 N -0.360 5.360 13 C 0.029 3.971 14 H 0.118 0.882 15 C -0.214 4.214 16 C 0.042 3.958 17 H 0.091 0.909 18 N -0.379 5.379 19 C -0.368 4.368 20 H 0.071 0.929 21 C -0.260 4.260 22 N -0.636 5.636 23 Si 0.788 3.212 24 H -0.202 1.202 25 H -0.225 1.225 26 H -0.171 1.171 27 C -0.177 4.177 28 H 0.065 0.935 29 H 0.084 0.916 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.098 0.902 33 H 0.081 0.919 34 H 0.093 0.907 35 H 0.060 0.940 36 H 0.069 0.931 37 H 0.136 0.864 38 H 0.130 0.870 39 H 0.251 0.749 40 H 0.098 0.902 41 H 0.066 0.934 42 H 0.203 0.797 43 H 0.067 0.933 44 H 0.103 0.897 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -0.472 3.650 31.074 31.291 hybrid contribution -0.222 0.817 -0.951 1.273 sum -0.693 4.467 30.123 30.461 Atomic orbital electron populations 1.21819 0.94751 1.01570 1.02148 1.22031 0.95625 0.99615 0.93315 0.89052 1.22562 0.95577 0.99819 0.97637 1.22390 0.97711 1.01315 0.94778 1.22067 0.97249 0.99309 0.96177 1.21579 0.97198 0.96107 0.94251 0.92645 1.21880 1.04375 0.98871 0.91598 1.21426 0.75848 0.88300 0.85045 1.90684 1.55193 1.16211 1.84236 1.45953 1.66746 1.10794 1.12501 1.22070 0.95473 0.96600 0.82959 0.88228 1.24200 0.98831 1.01305 0.97057 1.21634 0.94931 0.93660 0.85619 0.90926 1.42628 1.86305 1.04544 1.04409 1.19095 1.39618 0.92896 0.85213 0.92891 1.25611 1.02264 1.03220 0.94880 1.69905 1.57525 1.35552 1.00646 0.85318 0.77754 0.79844 0.78275 1.20204 1.22539 1.17090 1.23668 0.99292 1.01015 0.93684 0.93505 0.91583 0.92572 0.92077 0.90243 0.91907 0.90749 0.93988 0.93070 0.86435 0.87006 0.74871 0.90226 0.93435 0.79695 0.93342 0.89670 0.88292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.12 71.98 0.66 -1.02 16 2 C -0.09 -1.03 2.99 -9.72 -0.03 -1.06 16 3 H 0.09 0.82 7.85 -2.39 -0.02 0.80 16 4 C -0.12 -1.39 6.33 31.89 0.20 -1.19 16 5 C -0.12 -1.69 6.83 31.67 0.22 -1.47 16 6 C -0.11 -2.07 5.34 31.32 0.17 -1.90 16 7 C -0.07 -1.22 2.13 -10.07 -0.02 -1.24 16 8 H 0.05 1.22 7.67 -2.39 -0.02 1.20 16 9 C -0.13 -1.85 4.86 29.85 0.14 -1.71 16 10 C 0.51 11.66 7.35 87.66 0.64 12.30 16 11 O -0.58 -18.77 14.67 -3.03 -0.04 -18.82 16 12 N -0.71 -14.85 5.36 -439.75 -2.36 -17.21 16 13 C 0.14 3.60 4.24 45.58 0.19 3.80 16 14 H 0.10 2.96 7.47 -2.39 -0.02 2.94 16 15 C -0.17 -5.65 7.69 31.18 0.24 -5.41 16 16 C 0.15 5.54 4.47 45.52 0.20 5.74 16 17 H 0.07 2.84 8.11 -2.39 -0.02 2.82 16 18 N -0.74 -33.38 5.21 -320.44 -1.67 -35.05 16 19 C -0.24 -13.51 10.45 84.03 0.88 -12.63 16 20 H 0.05 3.34 8.06 -2.91 -0.02 3.32 16 21 C -0.07 -4.03 5.50 84.86 0.47 -3.57 16 22 N -0.99 -63.52 13.97 21.65 0.30 -63.21 16 23 Si 0.96 44.48 27.74 68.60 1.90 46.39 16 24 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 25 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 26 H -0.25 -10.00 6.51 99.48 0.65 -9.35 16 27 C -0.14 -3.61 7.58 31.12 0.24 -3.37 16 28 H 0.05 0.62 8.12 -2.39 -0.02 0.60 16 29 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.06 0.79 8.04 -2.39 -0.02 0.77 16 32 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.05 1.03 7.32 -2.38 -0.02 1.02 16 37 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.11 1.21 8.14 -2.38 -0.02 1.19 16 39 H 0.41 6.07 8.73 -92.71 -0.81 5.27 16 40 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 41 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 42 H 0.37 15.56 5.77 -92.71 -0.53 15.02 16 43 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 44 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 45 H 0.10 2.28 8.09 -2.39 -0.02 2.26 16 Total: -1.00 -72.85 355.64 1.89 -70.96 By element: Atomic # 1 Polarization: 30.11 SS G_CDS: -0.44 Total: 29.67 kcal Atomic # 6 Polarization: -16.92 SS G_CDS: 4.20 Total: -12.72 kcal Atomic # 7 Polarization: -111.75 SS G_CDS: -3.72 Total: -115.47 kcal Atomic # 8 Polarization: -18.77 SS G_CDS: -0.04 Total: -18.82 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 1.90 Total: 46.39 kcal Total: -72.85 1.89 -70.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022122329.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.251 kcal (2) G-P(sol) polarization free energy of solvation -72.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds