Wall clock time and date at job start Tue Mar 31 2020 02:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46925 * 2 1 4 4 C 1.52995 * 109.47518 * 120.00370 * 2 1 3 5 5 C 1.53000 * 109.47518 * 179.97438 * 4 2 1 6 6 C 1.52996 * 109.46814 * 300.00166 * 5 4 2 7 7 C 1.52999 * 109.47523 * 59.99798 * 6 5 4 8 8 C 1.52992 * 109.47075 * 300.00079 * 7 6 5 9 9 H 1.08996 * 109.47458 * 299.99642 * 8 7 6 10 10 C 1.50701 * 109.47044 * 179.97438 * 8 7 6 11 11 O 1.21283 * 119.99848 * 239.99617 * 10 8 7 12 12 N 1.34770 * 120.00331 * 59.99476 * 10 8 7 13 13 C 1.46502 * 120.00218 * 179.97438 * 12 10 8 14 14 H 1.09000 * 112.84940 * 23.80944 * 13 12 10 15 15 C 1.53787 * 113.61073 * 155.00331 * 13 12 10 16 16 C 1.53784 * 87.07923 * 140.06858 * 15 13 12 17 17 H 1.09002 * 113.61478 * 89.11632 * 16 15 13 18 18 N 1.46497 * 113.61569 * 220.01663 * 16 15 13 19 19 C 1.36932 * 120.00479 * 205.00086 * 18 16 15 20 20 H 1.08003 * 119.99876 * 0.02562 * 19 18 16 21 21 C 1.38814 * 120.00413 * 180.02562 * 19 18 16 22 22 N 1.31621 * 119.99626 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00270 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46868 * 59.99725 * 23 21 19 25 25 H 1.48493 * 109.47208 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.46879 * 300.00246 * 23 21 19 27 27 C 1.53779 * 87.08045 * 334.56667 * 16 15 13 28 28 H 1.08996 * 109.47186 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47085 * 300.00086 * 1 2 3 30 30 H 1.09005 * 109.47176 * 59.99920 * 1 2 3 31 31 H 1.09006 * 109.46873 * 59.99667 * 4 2 1 32 32 H 1.09001 * 109.47021 * 300.00394 * 4 2 1 33 33 H 1.08998 * 109.46844 * 179.97438 * 5 4 2 34 34 H 1.09002 * 109.46622 * 60.00084 * 5 4 2 35 35 H 1.09002 * 109.46937 * 299.99457 * 6 5 4 36 36 H 1.09003 * 109.46861 * 179.97438 * 6 5 4 37 37 H 1.09001 * 109.47331 * 179.97438 * 7 6 5 38 38 H 1.09006 * 109.46842 * 60.00084 * 7 6 5 39 39 H 0.97001 * 120.00074 * 0.02562 * 12 10 8 40 40 H 1.09004 * 113.61202 * 254.61611 * 15 13 12 41 41 H 1.08994 * 113.61447 * 25.52042 * 15 13 12 42 42 H 0.97009 * 119.99534 * 24.99936 * 18 16 15 43 43 H 0.97001 * 119.99577 * 180.02562 * 22 21 19 44 44 H 1.09006 * 113.61307 * 270.88660 * 27 16 15 45 45 H 1.08999 * 113.69146 * 139.99146 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5701 -0.7218 1.2488 6 6 4.0795 -1.4433 -0.0005 7 6 3.5694 -0.7221 -1.2497 8 6 2.0395 -0.7215 -1.2493 9 1 1.6758 -1.7490 -1.2492 10 6 1.5372 -0.0105 -2.4794 11 8 0.8402 0.9758 -2.3677 12 7 1.8623 -0.4706 -3.7038 13 6 1.3735 0.2203 -4.8996 14 1 1.1302 1.2665 -4.7142 15 6 2.2560 0.0034 -6.1402 16 6 0.9536 -0.1003 -6.9514 17 1 0.5955 0.8582 -7.3270 18 7 0.9856 -1.1407 -7.9823 19 6 0.1758 -1.0402 -9.0819 20 1 -0.4862 -0.1936 -9.1895 21 6 0.2058 -2.0262 -10.0585 22 7 1.0130 -3.0576 -9.9277 23 14 -0.8994 -1.8894 -11.5583 24 1 -0.5782 -0.6422 -12.2977 25 1 -0.6786 -3.0604 -12.4443 26 1 -2.3194 -1.8563 -11.1253 27 6 0.2698 -0.5455 -5.6479 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 1.6767 -1.7490 1.2491 32 1 1.6767 -0.2076 2.1392 33 1 3.9334 -1.2353 2.1390 34 1 3.9337 0.3057 1.2487 35 1 3.7158 -2.4709 -0.0003 36 1 5.1695 -1.4434 -0.0010 37 1 3.9327 -1.2359 -2.1397 38 1 3.9332 0.3055 -1.2499 39 1 2.4194 -1.2596 -3.7932 40 1 2.8644 0.8697 -6.4001 41 1 2.8281 -0.9239 -6.1124 42 1 1.5805 -1.9008 -7.8859 43 1 1.0342 -3.7465 -10.6103 44 1 0.2989 -1.6230 -5.4855 45 1 -0.7255 -0.1234 -5.5092 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022619732.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:11:52 Heat of formation + Delta-G solvation = -36.499240 kcal Electronic energy + Delta-G solvation = -22206.592096 eV Core-core repulsion = 19030.486734 eV Total energy + Delta-G solvation = -3176.105362 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.48927 -38.68515 -37.32719 -34.16412 -32.95611 -32.48367 -31.14792 -29.76071 -26.75685 -25.11541 -24.67449 -23.65468 -22.21414 -21.34787 -20.44640 -19.93200 -19.14130 -17.25758 -16.92370 -16.20260 -15.20776 -15.06399 -14.68913 -14.50397 -14.47846 -14.27395 -14.13542 -13.20991 -13.13703 -13.00518 -12.56960 -12.49530 -12.15857 -11.94551 -11.90763 -11.65032 -11.41010 -11.25554 -11.09530 -10.91072 -10.79394 -10.65621 -10.57649 -10.51509 -10.30644 -10.27899 -10.04412 -9.65600 -9.31234 -8.90737 -8.69037 -6.99299 -5.80919 -3.09717 2.73227 3.33358 3.42741 3.47225 3.48237 4.37223 4.44222 4.49305 4.58102 4.87623 4.91975 4.98032 5.09906 5.16201 5.17268 5.24481 5.25832 5.31160 5.38910 5.47494 5.55886 5.58024 5.72937 5.77726 5.83244 5.83979 5.86695 5.91496 5.95555 6.00839 6.07018 6.14296 6.25378 6.29371 6.31235 6.41778 6.57746 6.61782 6.78938 7.07352 7.67644 7.69097 8.37302 8.38253 9.48931 10.05679 10.40293 11.41482 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.035894 B = 0.002970 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.889635 B = 9426.060631 C = 9730.710018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.068 4.068 3 H 0.075 0.925 4 C -0.115 4.115 5 C -0.122 4.122 6 C -0.118 4.118 7 C -0.111 4.111 8 C -0.104 4.104 9 H 0.095 0.905 10 C 0.516 3.484 11 O -0.541 6.541 12 N -0.714 5.714 13 C 0.117 3.883 14 H 0.108 0.892 15 C -0.159 4.159 16 C 0.169 3.831 17 H 0.079 0.921 18 N -0.710 5.710 19 C -0.245 4.245 20 H 0.072 0.928 21 C -0.013 4.013 22 N -0.934 5.934 23 Si 0.908 3.092 24 H -0.285 1.285 25 H -0.291 1.291 26 H -0.285 1.285 27 C -0.176 4.176 28 H 0.045 0.955 29 H 0.049 0.951 30 H 0.085 0.915 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.398 0.602 40 H 0.065 0.935 41 H 0.081 0.919 42 H 0.385 0.615 43 H 0.256 0.744 44 H 0.078 0.922 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.133 3.581 22.206 23.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.087 4.087 3 H 0.093 0.907 4 C -0.153 4.153 5 C -0.159 4.159 6 C -0.155 4.155 7 C -0.149 4.149 8 C -0.125 4.125 9 H 0.113 0.887 10 C 0.302 3.698 11 O -0.419 6.419 12 N -0.363 5.363 13 C 0.012 3.988 14 H 0.126 0.874 15 C -0.199 4.199 16 C 0.056 3.944 17 H 0.097 0.903 18 N -0.348 5.348 19 C -0.376 4.376 20 H 0.090 0.910 21 C -0.209 4.209 22 N -0.582 5.582 23 Si 0.739 3.261 24 H -0.212 1.212 25 H -0.217 1.217 26 H -0.212 1.212 27 C -0.218 4.218 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.103 0.897 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.232 0.768 40 H 0.084 0.916 41 H 0.100 0.900 42 H 0.219 0.781 43 H 0.066 0.934 44 H 0.097 0.903 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.513 4.317 22.085 23.169 hybrid contribution -0.140 -0.777 -0.845 1.156 sum 5.373 3.540 21.240 22.193 Atomic orbital electron populations 1.22075 0.94700 1.01485 1.03468 1.20874 0.96248 0.99371 0.92169 0.90700 1.21637 0.95287 1.00747 0.97611 1.21563 0.95857 1.00816 0.97681 1.21527 1.00349 0.99436 0.94212 1.21530 0.93053 1.01669 0.98626 1.21423 0.96825 1.00874 0.93393 0.88726 1.20621 0.79919 0.84546 0.84702 1.90610 1.37983 1.26693 1.86598 1.46102 1.53062 1.31507 1.05672 1.22470 0.96695 0.97518 0.82081 0.87408 1.23857 0.98886 1.01818 0.95300 1.21350 0.92457 0.93452 0.87153 0.90273 1.42348 1.48041 1.23696 1.20730 1.19275 1.15593 1.05396 0.97313 0.91046 1.24765 0.99866 0.97156 0.99080 1.69649 1.40765 1.11955 1.35800 0.86248 0.80268 0.76870 0.82701 1.21187 1.21677 1.21199 1.24322 0.97841 1.00429 0.99225 0.93571 0.93220 0.89657 0.91954 0.91807 0.92053 0.91961 0.91728 0.91701 0.91345 0.91386 0.76757 0.91582 0.90039 0.78103 0.93399 0.90299 0.92334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.76 8.87 37.16 0.33 -1.43 16 2 C -0.07 -0.67 1.89 -90.62 -0.17 -0.84 16 3 H 0.07 0.84 8.10 -51.93 -0.42 0.42 16 4 C -0.12 -0.90 5.20 -26.73 -0.14 -1.04 16 5 C -0.12 -0.85 5.92 -26.73 -0.16 -1.00 16 6 C -0.12 -0.81 5.92 -26.73 -0.16 -0.97 16 7 C -0.11 -0.91 5.10 -26.74 -0.14 -1.05 16 8 C -0.10 -1.03 2.06 -91.77 -0.19 -1.22 16 9 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 10 C 0.52 6.82 6.86 -10.99 -0.08 6.74 16 11 O -0.54 -8.97 13.25 5.55 0.07 -8.90 16 12 N -0.71 -9.11 5.25 -53.01 -0.28 -9.39 16 13 C 0.12 1.76 4.24 -67.12 -0.28 1.48 16 14 H 0.11 1.71 7.46 -51.93 -0.39 1.32 16 15 C -0.16 -2.50 7.58 -25.91 -0.20 -2.69 16 16 C 0.17 3.29 4.48 -67.12 -0.30 2.99 16 17 H 0.08 1.54 8.10 -51.93 -0.42 1.12 16 18 N -0.71 -17.54 5.40 -52.64 -0.28 -17.82 16 19 C -0.24 -6.75 9.97 -15.06 -0.15 -6.90 16 20 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 21 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 22 N -0.93 -27.90 13.06 55.49 0.72 -27.17 16 23 Si 0.91 22.28 29.55 -169.99 -5.02 17.25 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 25 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 26 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 27 C -0.18 -3.10 7.68 -25.92 -0.20 -3.30 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.08 1.18 5.51 -51.93 -0.29 0.89 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.07 0.52 7.57 -51.93 -0.39 0.12 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.40 4.25 8.15 -40.82 -0.33 3.92 16 40 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 41 H 0.08 1.26 8.09 -51.93 -0.42 0.84 16 42 H 0.38 9.99 7.92 -40.82 -0.32 9.67 16 43 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 44 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 45 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 352.01 15.07 5.30 5.30 Total: -1.00 -30.83 352.01 -9.43 -40.26 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: -8.03 Total: 10.15 kcal Atomic # 6 Polarization: -7.76 SS G_CDS: -1.92 Total: -9.69 kcal Atomic # 7 Polarization: -54.54 SS G_CDS: 0.16 Total: -54.38 kcal Atomic # 8 Polarization: -8.97 SS G_CDS: 0.07 Total: -8.90 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.83 -9.43 -40.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022619732.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.761 kcal (2) G-P(sol) polarization free energy of solvation -30.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds