Wall clock time and date at job start Tue Mar 31 2020 02:11:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46925 * 2 1 4 4 C 1.52995 * 109.47518 * 120.00370 * 2 1 3 5 5 C 1.53000 * 109.47518 * 179.97438 * 4 2 1 6 6 C 1.52996 * 109.46814 * 300.00166 * 5 4 2 7 7 C 1.52999 * 109.47523 * 59.99798 * 6 5 4 8 8 C 1.52992 * 109.47075 * 300.00079 * 7 6 5 9 9 H 1.08996 * 109.47458 * 299.99642 * 8 7 6 10 10 C 1.50701 * 109.47044 * 179.97438 * 8 7 6 11 11 O 1.21283 * 119.99848 * 239.99617 * 10 8 7 12 12 N 1.34770 * 120.00331 * 59.99476 * 10 8 7 13 13 C 1.46502 * 120.00218 * 179.97438 * 12 10 8 14 14 H 1.09000 * 112.84940 * 23.80944 * 13 12 10 15 15 C 1.53787 * 113.61073 * 155.00331 * 13 12 10 16 16 C 1.53784 * 87.07923 * 140.06858 * 15 13 12 17 17 H 1.09002 * 113.61478 * 89.11632 * 16 15 13 18 18 N 1.46497 * 113.61569 * 220.01663 * 16 15 13 19 19 C 1.36932 * 120.00479 * 205.00086 * 18 16 15 20 20 H 1.08003 * 119.99876 * 0.02562 * 19 18 16 21 21 C 1.38814 * 120.00413 * 180.02562 * 19 18 16 22 22 N 1.31621 * 119.99626 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00270 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46868 * 59.99725 * 23 21 19 25 25 H 1.48493 * 109.47208 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.46879 * 300.00246 * 23 21 19 27 27 C 1.53779 * 87.08045 * 334.56667 * 16 15 13 28 28 H 1.08996 * 109.47186 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47085 * 300.00086 * 1 2 3 30 30 H 1.09005 * 109.47176 * 59.99920 * 1 2 3 31 31 H 1.09006 * 109.46873 * 59.99667 * 4 2 1 32 32 H 1.09001 * 109.47021 * 300.00394 * 4 2 1 33 33 H 1.08998 * 109.46844 * 179.97438 * 5 4 2 34 34 H 1.09002 * 109.46622 * 60.00084 * 5 4 2 35 35 H 1.09002 * 109.46937 * 299.99457 * 6 5 4 36 36 H 1.09003 * 109.46861 * 179.97438 * 6 5 4 37 37 H 1.09001 * 109.47331 * 179.97438 * 7 6 5 38 38 H 1.09006 * 109.46842 * 60.00084 * 7 6 5 39 39 H 0.97001 * 120.00074 * 0.02562 * 12 10 8 40 40 H 1.09004 * 113.61202 * 254.61611 * 15 13 12 41 41 H 1.08994 * 113.61447 * 25.52042 * 15 13 12 42 42 H 0.97009 * 119.99534 * 24.99936 * 18 16 15 43 43 H 0.97001 * 119.99577 * 180.02562 * 22 21 19 44 44 H 1.09006 * 113.61307 * 270.88660 * 27 16 15 45 45 H 1.08999 * 113.69146 * 139.99146 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5701 -0.7218 1.2488 6 6 4.0795 -1.4433 -0.0005 7 6 3.5694 -0.7221 -1.2497 8 6 2.0395 -0.7215 -1.2493 9 1 1.6758 -1.7490 -1.2492 10 6 1.5372 -0.0105 -2.4794 11 8 0.8402 0.9758 -2.3677 12 7 1.8623 -0.4706 -3.7038 13 6 1.3735 0.2203 -4.8996 14 1 1.1302 1.2665 -4.7142 15 6 2.2560 0.0034 -6.1402 16 6 0.9536 -0.1003 -6.9514 17 1 0.5955 0.8582 -7.3270 18 7 0.9856 -1.1407 -7.9823 19 6 0.1758 -1.0402 -9.0819 20 1 -0.4862 -0.1936 -9.1895 21 6 0.2058 -2.0262 -10.0585 22 7 1.0130 -3.0576 -9.9277 23 14 -0.8994 -1.8894 -11.5583 24 1 -0.5782 -0.6422 -12.2977 25 1 -0.6786 -3.0604 -12.4443 26 1 -2.3194 -1.8563 -11.1253 27 6 0.2698 -0.5455 -5.6479 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 1.6767 -1.7490 1.2491 32 1 1.6767 -0.2076 2.1392 33 1 3.9334 -1.2353 2.1390 34 1 3.9337 0.3057 1.2487 35 1 3.7158 -2.4709 -0.0003 36 1 5.1695 -1.4434 -0.0010 37 1 3.9327 -1.2359 -2.1397 38 1 3.9332 0.3055 -1.2499 39 1 2.4194 -1.2596 -3.7932 40 1 2.8644 0.8697 -6.4001 41 1 2.8281 -0.9239 -6.1124 42 1 1.5805 -1.9008 -7.8859 43 1 1.0342 -3.7465 -10.6103 44 1 0.2989 -1.6230 -5.4855 45 1 -0.7255 -0.1234 -5.5092 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022619732.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:11:51 Heat of formation + Delta-G solvation = -55.218184 kcal Electronic energy + Delta-G solvation = -22207.403811 eV Core-core repulsion = 19030.486734 eV Total energy + Delta-G solvation = -3176.917077 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.50945 -39.89959 -38.35910 -35.79991 -34.40024 -33.28724 -32.23493 -31.37932 -27.57692 -26.55447 -26.34500 -24.76877 -23.44695 -22.15949 -21.46541 -20.90727 -20.39956 -19.15737 -18.01594 -17.55047 -16.45503 -16.20561 -15.99447 -15.76295 -15.37282 -15.17396 -15.06917 -14.90182 -14.55866 -14.07149 -13.57986 -13.48534 -13.31049 -13.15667 -13.11933 -12.81194 -12.70255 -12.40739 -12.27205 -12.22041 -12.12909 -12.00037 -11.79691 -11.72398 -11.52232 -11.43511 -11.33584 -10.95705 -10.86868 -10.35435 -9.91950 -8.99154 -7.95756 -5.23824 1.47669 1.50009 1.56104 1.67647 2.26958 2.57125 3.35755 3.61263 3.68766 3.72775 3.79784 3.87472 3.96907 4.15780 4.22804 4.27848 4.31449 4.36612 4.47190 4.51508 4.58658 4.61820 4.74780 4.80164 4.87947 4.89898 4.94289 5.03539 5.08008 5.13746 5.14596 5.20848 5.24718 5.33173 5.36953 5.39642 5.41086 5.49907 5.57290 5.60638 5.72484 6.26692 6.64328 7.33167 7.33266 8.08732 8.32521 9.27179 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.035894 B = 0.002970 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.889635 B = 9426.060631 C = 9730.710018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.067 4.067 3 H 0.058 0.942 4 C -0.110 4.110 5 C -0.121 4.121 6 C -0.115 4.115 7 C -0.108 4.108 8 C -0.097 4.097 9 H 0.108 0.892 10 C 0.512 3.488 11 O -0.577 6.577 12 N -0.707 5.707 13 C 0.136 3.864 14 H 0.103 0.897 15 C -0.139 4.139 16 C 0.149 3.851 17 H 0.077 0.923 18 N -0.723 5.723 19 C -0.247 4.247 20 H 0.075 0.925 21 C -0.074 4.074 22 N -0.968 5.968 23 Si 0.971 3.029 24 H -0.277 1.277 25 H -0.295 1.295 26 H -0.280 1.280 27 C -0.170 4.170 28 H 0.052 0.948 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.057 0.943 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.058 0.942 39 H 0.411 0.589 40 H 0.081 0.919 41 H 0.088 0.912 42 H 0.376 0.624 43 H 0.252 0.748 44 H 0.070 0.930 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.915 3.401 23.538 24.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.086 4.086 3 H 0.076 0.924 4 C -0.148 4.148 5 C -0.159 4.159 6 C -0.152 4.152 7 C -0.146 4.146 8 C -0.118 4.118 9 H 0.126 0.874 10 C 0.301 3.699 11 O -0.457 6.457 12 N -0.357 5.357 13 C 0.030 3.970 14 H 0.121 0.879 15 C -0.179 4.179 16 C 0.039 3.961 17 H 0.095 0.905 18 N -0.361 5.361 19 C -0.379 4.379 20 H 0.093 0.907 21 C -0.266 4.266 22 N -0.619 5.619 23 Si 0.800 3.200 24 H -0.203 1.203 25 H -0.221 1.221 26 H -0.206 1.206 27 C -0.212 4.212 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.076 0.924 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.077 0.923 39 H 0.248 0.752 40 H 0.099 0.901 41 H 0.106 0.894 42 H 0.208 0.792 43 H 0.060 0.940 44 H 0.089 0.911 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 6.304 4.164 23.459 24.645 hybrid contribution -0.420 -0.647 -1.182 1.412 sum 5.884 3.517 22.276 23.307 Atomic orbital electron populations 1.22023 0.95686 1.01536 1.02301 1.20861 0.95398 0.98884 0.93423 0.92370 1.21598 0.95994 1.00784 0.96386 1.21570 0.95040 1.00851 0.98394 1.21527 1.00990 0.99514 0.93193 1.21538 0.91442 1.01595 1.00026 1.21445 0.98103 1.00861 0.91395 0.87361 1.21271 0.79064 0.84120 0.85494 1.90609 1.39522 1.28426 1.87108 1.45987 1.52997 1.31774 1.04954 1.22084 0.95113 0.96960 0.82794 0.87877 1.23656 0.97355 1.02800 0.94046 1.21666 0.95502 0.92171 0.86766 0.90483 1.42486 1.47676 1.24640 1.21296 1.19660 1.15280 1.05023 0.97950 0.90720 1.25538 1.01759 0.97254 1.02052 1.69793 1.42655 1.12770 1.36633 0.85246 0.78626 0.76735 0.79374 1.20345 1.22093 1.20640 1.24153 0.98268 1.00137 0.98621 0.92845 0.92447 0.92725 0.91210 0.91332 0.90660 0.92398 0.90934 0.90641 0.90366 0.92282 0.75241 0.90065 0.89398 0.79172 0.93957 0.91134 0.93081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.40 8.87 71.98 0.64 -2.76 16 2 C -0.07 -1.25 1.89 -10.79 -0.02 -1.27 16 3 H 0.06 1.28 8.10 -2.39 -0.02 1.26 16 4 C -0.11 -1.47 5.20 30.59 0.16 -1.31 16 5 C -0.12 -1.37 5.92 30.59 0.18 -1.19 16 6 C -0.11 -1.25 5.92 30.59 0.18 -1.07 16 7 C -0.11 -1.53 5.10 30.59 0.16 -1.38 16 8 C -0.10 -1.76 2.06 -11.54 -0.02 -1.78 16 9 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 10 C 0.51 13.08 6.86 87.66 0.60 13.68 16 11 O -0.58 -19.17 13.25 -3.04 -0.04 -19.21 16 12 N -0.71 -17.01 5.25 -440.03 -2.31 -19.32 16 13 C 0.14 3.95 4.24 45.52 0.19 4.15 16 14 H 0.10 3.18 7.46 -2.39 -0.02 3.17 16 15 C -0.14 -4.17 7.58 31.12 0.24 -3.93 16 16 C 0.15 5.78 4.48 45.52 0.20 5.98 16 17 H 0.08 2.99 8.10 -2.39 -0.02 2.97 16 18 N -0.72 -35.87 5.40 -320.45 -1.73 -37.60 16 19 C -0.25 -13.68 9.97 84.03 0.84 -12.84 16 20 H 0.07 3.98 7.83 -2.91 -0.02 3.96 16 21 C -0.07 -4.20 5.50 84.86 0.47 -3.74 16 22 N -0.97 -58.53 13.06 21.65 0.28 -58.25 16 23 Si 0.97 45.98 29.55 68.60 2.03 48.01 16 24 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 25 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 26 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 27 C -0.17 -5.93 7.68 31.12 0.24 -5.69 16 28 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.05 1.53 5.51 -2.38 -0.01 1.52 16 31 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 32 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.08 0.96 7.57 -2.39 -0.02 0.94 16 38 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 39 H 0.41 7.90 8.15 -92.71 -0.76 7.15 16 40 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 41 H 0.09 2.57 8.09 -2.39 -0.02 2.55 16 42 H 0.38 19.71 7.92 -92.70 -0.73 18.98 16 43 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 44 H 0.07 2.59 8.14 -2.38 -0.02 2.57 16 45 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -66.46 352.01 1.76 -64.71 By element: Atomic # 1 Polarization: 35.33 SS G_CDS: -0.52 Total: 34.80 kcal Atomic # 6 Polarization: -17.19 SS G_CDS: 4.05 Total: -13.14 kcal Atomic # 7 Polarization: -111.41 SS G_CDS: -3.76 Total: -115.17 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: -0.04 Total: -19.21 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal Total: -66.46 1.76 -64.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022619732.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.489 kcal (2) G-P(sol) polarization free energy of solvation -66.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds