Wall clock time and date at job start Tue Mar 31 2020 02:10:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 115.56247 * 2 1 4 4 C 1.53001 * 117.49833 * 145.68912 * 2 1 3 5 5 C 1.53003 * 117.50092 * 214.31504 * 2 1 3 6 6 H 1.08992 * 117.52215 * 145.03200 * 5 2 1 7 7 C 1.53004 * 117.49526 * 359.97438 * 5 2 1 8 8 C 1.50699 * 109.47013 * 174.98821 * 7 5 2 9 9 O 1.21285 * 120.00042 * 0.02562 * 8 7 5 10 10 N 1.34772 * 120.00002 * 180.02562 * 8 7 5 11 11 C 1.46509 * 119.99906 * 179.97438 * 10 8 7 12 12 H 1.08999 * 109.46579 * 35.00186 * 11 10 8 13 13 C 1.53002 * 109.46672 * 154.99901 * 11 10 8 14 14 C 1.53007 * 109.46614 * 180.02562 * 13 11 10 15 15 C 1.53005 * 109.47068 * 299.99919 * 14 13 11 16 16 H 1.08993 * 109.47586 * 300.00534 * 15 14 13 17 17 N 1.46499 * 109.46843 * 180.02562 * 15 14 13 18 18 C 1.36932 * 119.99549 * 155.00368 * 17 15 14 19 19 H 1.08003 * 120.00354 * 0.02562 * 18 17 15 20 20 C 1.38817 * 120.00011 * 179.97438 * 18 17 15 21 21 N 1.31619 * 120.00154 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 119.99635 * 0.02562 * 20 18 17 23 23 H 1.48506 * 109.47297 * 269.99668 * 22 20 18 24 24 H 1.48503 * 109.47261 * 149.99848 * 22 20 18 25 25 H 1.48500 * 109.47454 * 29.99841 * 22 20 18 26 26 C 1.53003 * 109.46830 * 60.00367 * 15 14 13 27 27 C 1.52996 * 109.47284 * 299.99806 * 26 15 14 28 28 H 1.09001 * 109.47356 * 205.68554 * 1 2 3 29 29 H 1.08998 * 109.47511 * 325.68777 * 1 2 3 30 30 H 1.09000 * 109.47035 * 85.68478 * 1 2 3 31 31 H 1.08994 * 117.50022 * 0.02562 * 4 2 1 32 32 H 1.09003 * 117.51914 * 214.96946 * 4 2 1 33 33 H 1.09000 * 109.47039 * 54.99020 * 7 5 2 34 34 H 1.09000 * 109.46919 * 294.98991 * 7 5 2 35 35 H 0.96999 * 120.00157 * 0.02562 * 10 8 7 36 36 H 1.09001 * 109.47083 * 60.00340 * 13 11 10 37 37 H 1.08999 * 109.47339 * 300.00071 * 13 11 10 38 38 H 1.09003 * 109.46869 * 180.02562 * 14 13 11 39 39 H 1.09001 * 109.47293 * 60.00254 * 14 13 11 40 40 H 0.96993 * 120.00302 * 335.00332 * 17 15 14 41 41 H 0.96998 * 119.99442 * 179.97438 * 21 20 18 42 42 H 1.09001 * 109.47208 * 59.99863 * 26 15 14 43 43 H 1.09000 * 109.47252 * 179.97438 * 26 15 14 44 44 H 1.09001 * 109.47044 * 300.00157 * 27 26 15 45 45 H 1.08995 * 109.47394 * 180.02562 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2364 -1.1210 0.7650 5 6 2.2365 -1.1209 -0.7651 6 1 3.1716 -0.8755 -1.2683 7 6 1.3588 -2.1564 -1.4711 8 6 2.2300 -3.0968 -2.2634 9 8 3.4343 -2.9533 -2.2630 10 7 1.6708 -4.0973 -2.9724 11 6 2.5177 -5.0113 -3.7430 12 1 3.4544 -5.1750 -3.2101 13 6 1.7937 -6.3469 -3.9241 14 6 2.6785 -7.3016 -4.7284 15 6 2.9726 -6.6908 -6.1001 16 1 2.0362 -6.5271 -6.6333 17 7 3.8192 -7.6052 -6.8704 18 6 3.8054 -7.5618 -8.2389 19 1 3.1707 -6.8533 -8.7505 20 6 4.6080 -8.4279 -8.9689 21 7 4.5951 -8.3859 -10.2844 22 14 5.7063 -9.6527 -8.0842 23 1 7.0325 -9.0349 -7.8298 24 1 5.8777 -10.8631 -8.9274 25 1 5.0819 -10.0342 -6.7919 26 6 3.6966 -5.3551 -5.9189 27 6 2.8119 -4.4005 -5.1146 28 1 -0.3634 -0.9261 0.4454 29 1 -0.3634 0.8488 0.5793 30 1 -0.3633 0.0773 -1.0248 31 1 1.6112 -1.8587 1.2679 32 1 3.1716 -0.8756 1.2683 33 1 0.6671 -1.6487 -2.1433 34 1 0.7951 -2.7216 -0.7288 35 1 0.7076 -4.2119 -2.9730 36 1 0.8571 -6.1832 -4.4569 37 1 1.5846 -6.7823 -2.9469 38 1 2.1626 -8.2530 -4.8578 39 1 3.6150 -7.4653 -4.1952 40 1 4.3895 -8.2412 -6.4110 41 1 5.1563 -8.9908 -10.7943 42 1 4.6330 -5.5188 -5.3857 43 1 3.9065 -4.9201 -6.8960 44 1 1.8754 -4.2368 -5.6478 45 1 3.3274 -3.4488 -4.9859 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034724301.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:53 Heat of formation + Delta-G solvation = -26.725999 kcal Electronic energy + Delta-G solvation = -21847.820972 eV Core-core repulsion = 18672.139409 eV Total energy + Delta-G solvation = -3175.681563 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.17844 -38.54903 -37.58057 -34.94068 -33.07082 -31.17983 -30.47948 -30.09840 -28.60098 -27.32041 -23.43427 -22.49122 -21.99910 -21.18212 -20.56502 -19.80281 -19.36752 -17.69949 -17.23099 -16.24510 -15.84118 -15.34900 -14.93423 -14.35505 -14.16307 -13.99923 -13.75821 -13.61973 -13.27736 -12.98687 -12.85176 -12.67296 -12.35362 -12.12819 -11.96545 -11.83318 -11.72802 -11.52929 -11.14977 -10.88054 -10.85447 -10.64862 -10.23919 -10.21733 -10.17229 -10.13935 -9.81518 -9.74893 -9.55424 -8.98621 -8.85868 -7.23919 -5.74849 -3.09925 2.59525 3.05453 3.39447 3.42830 3.47227 3.48795 4.32110 4.44824 4.53127 4.61386 4.71215 4.86690 4.94451 4.97388 5.10767 5.13994 5.23401 5.33373 5.43231 5.46076 5.48273 5.54506 5.56521 5.59207 5.63828 5.67565 5.79252 5.80893 5.92786 5.94523 6.03768 6.13191 6.19423 6.23071 6.37520 6.47675 6.58011 6.65717 6.91357 7.06663 7.45885 8.02087 8.19506 8.44608 9.23480 9.96269 10.16370 11.43619 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.044375 B = 0.002772 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.831602 B =10097.285991 C =10123.219122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.156 4.156 3 H 0.104 0.896 4 C -0.175 4.175 5 C -0.136 4.136 6 H 0.118 0.882 7 C -0.110 4.110 8 C 0.512 3.488 9 O -0.537 6.537 10 N -0.728 5.728 11 C 0.144 3.856 12 H 0.086 0.914 13 C -0.118 4.118 14 C -0.124 4.124 15 C 0.182 3.818 16 H 0.055 0.945 17 N -0.750 5.750 18 C -0.241 4.241 19 H 0.090 0.910 20 C 0.002 3.998 21 N -0.935 5.935 22 Si 0.884 3.116 23 H -0.285 1.285 24 H -0.292 1.292 25 H -0.277 1.277 26 C -0.132 4.132 27 C -0.123 4.123 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.096 0.904 34 H 0.092 0.908 35 H 0.397 0.603 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.068 0.932 39 H 0.060 0.940 40 H 0.360 0.640 41 H 0.259 0.741 42 H 0.055 0.945 43 H 0.068 0.932 44 H 0.060 0.940 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.978 13.352 22.220 28.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.175 4.175 3 H 0.122 0.878 4 C -0.212 4.212 5 C -0.154 4.154 6 H 0.136 0.864 7 C -0.149 4.149 8 C 0.299 3.701 9 O -0.414 6.414 10 N -0.379 5.379 11 C 0.040 3.960 12 H 0.104 0.896 13 C -0.157 4.157 14 C -0.163 4.163 15 C 0.073 3.927 16 H 0.073 0.927 17 N -0.392 5.392 18 C -0.371 4.371 19 H 0.108 0.892 20 C -0.193 4.193 21 N -0.583 5.583 22 Si 0.715 3.285 23 H -0.211 1.211 24 H -0.218 1.218 25 H -0.203 1.203 26 C -0.173 4.173 27 C -0.163 4.163 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.111 0.889 32 H 0.112 0.888 33 H 0.114 0.886 34 H 0.110 0.890 35 H 0.231 0.769 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.079 0.921 40 H 0.193 0.807 41 H 0.069 0.931 42 H 0.074 0.926 43 H 0.087 0.913 44 H 0.078 0.922 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -10.154 13.482 21.962 27.698 hybrid contribution 0.443 -0.944 0.464 1.142 sum -9.711 12.537 22.425 27.466 Atomic orbital electron populations 1.21362 0.92901 1.01928 1.01877 1.22423 0.95342 0.94620 1.05067 0.87813 1.23166 1.02466 1.01355 0.94173 1.22140 1.01190 0.98291 0.93784 0.86384 1.21195 0.98025 0.96105 0.99614 1.20577 0.89084 0.81277 0.79194 1.90707 1.15167 1.71957 1.63552 1.46178 1.10592 1.31390 1.49708 1.21096 0.94416 0.88304 0.92158 0.89597 1.21732 0.99280 0.94387 1.00274 1.21795 0.99395 0.98365 0.96733 1.20213 0.93754 0.88860 0.89906 0.92738 1.42794 1.50730 1.41773 1.03885 1.19080 1.20995 1.16467 0.80544 0.89241 1.24679 0.99918 0.99506 0.95207 1.69704 1.43408 1.41018 1.04185 0.86545 0.81353 0.81695 0.78913 1.21124 1.21820 1.20322 1.22183 0.98509 0.96917 0.99725 1.21882 1.00460 0.99223 0.94698 0.92514 0.92217 0.92088 0.88890 0.88828 0.88552 0.89003 0.76917 0.91382 0.91869 0.91317 0.92125 0.80705 0.93116 0.92627 0.91325 0.92161 0.92254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.68 9.19 37.16 0.34 -0.34 16 2 C -0.16 -1.10 6.41 -90.62 -0.58 -1.68 16 3 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 4 C -0.17 -1.34 9.82 -26.73 -0.26 -1.61 16 5 C -0.14 -1.20 5.42 -90.61 -0.49 -1.69 16 6 H 0.12 1.32 7.30 -51.93 -0.38 0.94 16 7 C -0.11 -0.85 5.06 -27.88 -0.14 -0.99 16 8 C 0.51 5.90 7.79 -10.99 -0.09 5.81 16 9 O -0.54 -8.60 15.22 5.55 0.08 -8.51 16 10 N -0.73 -7.34 5.08 -53.80 -0.27 -7.62 16 11 C 0.14 1.83 2.45 -67.93 -0.17 1.66 16 12 H 0.09 1.28 7.58 -51.93 -0.39 0.88 16 13 C -0.12 -1.37 5.39 -26.73 -0.14 -1.52 16 14 C -0.12 -1.86 5.39 -26.72 -0.14 -2.00 16 15 C 0.18 3.42 2.77 -67.93 -0.19 3.23 16 16 H 0.05 1.06 8.08 -51.93 -0.42 0.64 16 17 N -0.75 -17.71 4.93 -53.42 -0.26 -17.97 16 18 C -0.24 -6.80 10.41 -15.06 -0.16 -6.95 16 19 H 0.09 2.70 8.06 -52.48 -0.42 2.28 16 20 C 0.00 0.07 5.50 -17.43 -0.10 -0.02 16 21 N -0.94 -29.56 13.97 55.49 0.78 -28.78 16 22 Si 0.88 22.33 27.73 -169.99 -4.71 17.62 16 23 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 24 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 25 H -0.28 -6.56 6.52 56.52 0.37 -6.19 16 26 C -0.13 -2.35 5.50 -26.73 -0.15 -2.50 16 27 C -0.12 -1.79 5.50 -26.73 -0.15 -1.94 16 28 H 0.06 0.28 7.90 -51.93 -0.41 -0.13 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.31 7.83 -51.93 -0.41 -0.09 16 31 H 0.09 0.64 7.94 -51.93 -0.41 0.22 16 32 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.10 0.59 7.77 -51.93 -0.40 0.19 16 34 H 0.09 0.55 7.87 -51.93 -0.41 0.14 16 35 H 0.40 2.76 8.60 -40.82 -0.35 2.40 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.36 8.41 5.66 -40.82 -0.23 8.18 16 41 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 42 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 44 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 356.74 15.07 5.38 5.38 Total: -1.00 -33.38 356.74 -9.48 -42.86 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: -8.06 Total: 7.57 kcal Atomic # 6 Polarization: -8.13 SS G_CDS: -2.41 Total: -10.54 kcal Atomic # 7 Polarization: -54.61 SS G_CDS: 0.24 Total: -54.37 kcal Atomic # 8 Polarization: -8.60 SS G_CDS: 0.08 Total: -8.51 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -4.71 Total: 17.62 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.38 -9.48 -42.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034724301.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.133 kcal (2) G-P(sol) polarization free energy of solvation -33.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds