Wall clock time and date at job start Tue Mar 31 2020 02:10:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 115.56247 * 2 1 4 4 C 1.53001 * 117.49833 * 145.68912 * 2 1 3 5 5 C 1.53003 * 117.50092 * 214.31504 * 2 1 3 6 6 H 1.08992 * 117.52215 * 145.03200 * 5 2 1 7 7 C 1.53004 * 117.49526 * 359.97438 * 5 2 1 8 8 C 1.50699 * 109.47013 * 174.98821 * 7 5 2 9 9 O 1.21285 * 120.00042 * 0.02562 * 8 7 5 10 10 N 1.34772 * 120.00002 * 180.02562 * 8 7 5 11 11 C 1.46509 * 119.99906 * 179.97438 * 10 8 7 12 12 H 1.08999 * 109.46579 * 35.00186 * 11 10 8 13 13 C 1.53002 * 109.46672 * 154.99901 * 11 10 8 14 14 C 1.53007 * 109.46614 * 180.02562 * 13 11 10 15 15 C 1.53005 * 109.47068 * 299.99919 * 14 13 11 16 16 H 1.08993 * 109.47586 * 300.00534 * 15 14 13 17 17 N 1.46499 * 109.46843 * 180.02562 * 15 14 13 18 18 C 1.36932 * 119.99549 * 155.00368 * 17 15 14 19 19 H 1.08003 * 120.00354 * 0.02562 * 18 17 15 20 20 C 1.38817 * 120.00011 * 179.97438 * 18 17 15 21 21 N 1.31619 * 120.00154 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 119.99635 * 0.02562 * 20 18 17 23 23 H 1.48506 * 109.47297 * 269.99668 * 22 20 18 24 24 H 1.48503 * 109.47261 * 149.99848 * 22 20 18 25 25 H 1.48500 * 109.47454 * 29.99841 * 22 20 18 26 26 C 1.53003 * 109.46830 * 60.00367 * 15 14 13 27 27 C 1.52996 * 109.47284 * 299.99806 * 26 15 14 28 28 H 1.09001 * 109.47356 * 205.68554 * 1 2 3 29 29 H 1.08998 * 109.47511 * 325.68777 * 1 2 3 30 30 H 1.09000 * 109.47035 * 85.68478 * 1 2 3 31 31 H 1.08994 * 117.50022 * 0.02562 * 4 2 1 32 32 H 1.09003 * 117.51914 * 214.96946 * 4 2 1 33 33 H 1.09000 * 109.47039 * 54.99020 * 7 5 2 34 34 H 1.09000 * 109.46919 * 294.98991 * 7 5 2 35 35 H 0.96999 * 120.00157 * 0.02562 * 10 8 7 36 36 H 1.09001 * 109.47083 * 60.00340 * 13 11 10 37 37 H 1.08999 * 109.47339 * 300.00071 * 13 11 10 38 38 H 1.09003 * 109.46869 * 180.02562 * 14 13 11 39 39 H 1.09001 * 109.47293 * 60.00254 * 14 13 11 40 40 H 0.96993 * 120.00302 * 335.00332 * 17 15 14 41 41 H 0.96998 * 119.99442 * 179.97438 * 21 20 18 42 42 H 1.09001 * 109.47208 * 59.99863 * 26 15 14 43 43 H 1.09000 * 109.47252 * 179.97438 * 26 15 14 44 44 H 1.09001 * 109.47044 * 300.00157 * 27 26 15 45 45 H 1.08995 * 109.47394 * 180.02562 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2364 -1.1210 0.7650 5 6 2.2365 -1.1209 -0.7651 6 1 3.1716 -0.8755 -1.2683 7 6 1.3588 -2.1564 -1.4711 8 6 2.2300 -3.0968 -2.2634 9 8 3.4343 -2.9533 -2.2630 10 7 1.6708 -4.0973 -2.9724 11 6 2.5177 -5.0113 -3.7430 12 1 3.4544 -5.1750 -3.2101 13 6 1.7937 -6.3469 -3.9241 14 6 2.6785 -7.3016 -4.7284 15 6 2.9726 -6.6908 -6.1001 16 1 2.0362 -6.5271 -6.6333 17 7 3.8192 -7.6052 -6.8704 18 6 3.8054 -7.5618 -8.2389 19 1 3.1707 -6.8533 -8.7505 20 6 4.6080 -8.4279 -8.9689 21 7 4.5951 -8.3859 -10.2844 22 14 5.7063 -9.6527 -8.0842 23 1 7.0325 -9.0349 -7.8298 24 1 5.8777 -10.8631 -8.9274 25 1 5.0819 -10.0342 -6.7919 26 6 3.6966 -5.3551 -5.9189 27 6 2.8119 -4.4005 -5.1146 28 1 -0.3634 -0.9261 0.4454 29 1 -0.3634 0.8488 0.5793 30 1 -0.3633 0.0773 -1.0248 31 1 1.6112 -1.8587 1.2679 32 1 3.1716 -0.8756 1.2683 33 1 0.6671 -1.6487 -2.1433 34 1 0.7951 -2.7216 -0.7288 35 1 0.7076 -4.2119 -2.9730 36 1 0.8571 -6.1832 -4.4569 37 1 1.5846 -6.7823 -2.9469 38 1 2.1626 -8.2530 -4.8578 39 1 3.6150 -7.4653 -4.1952 40 1 4.3895 -8.2412 -6.4110 41 1 5.1563 -8.9908 -10.7943 42 1 4.6330 -5.5188 -5.3857 43 1 3.9065 -4.9201 -6.8960 44 1 1.8754 -4.2368 -5.6478 45 1 3.3274 -3.4488 -4.9859 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034724301.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:52 Heat of formation + Delta-G solvation = -48.605292 kcal Electronic energy + Delta-G solvation = -21848.769730 eV Core-core repulsion = 18672.139409 eV Total energy + Delta-G solvation = -3176.630320 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.12617 -39.58135 -38.47337 -36.42842 -34.63305 -32.95991 -31.70691 -31.01760 -29.31140 -28.48864 -25.25096 -23.72620 -22.91558 -22.24978 -21.52757 -21.13267 -20.14418 -19.54580 -18.21654 -17.26595 -16.81213 -16.55877 -16.32302 -15.91342 -15.12444 -15.03698 -14.74264 -14.72707 -14.67882 -14.35823 -13.88363 -13.61063 -13.56043 -13.30845 -13.11451 -12.93830 -12.83772 -12.46679 -12.40527 -12.27370 -12.08482 -12.06164 -11.94302 -11.79585 -11.48701 -11.22756 -10.93837 -10.85796 -10.78936 -10.57322 -9.98446 -9.30269 -8.02062 -5.34834 1.37162 1.40737 1.47867 1.71966 2.21301 2.48634 2.89144 3.29069 3.55970 3.73017 3.76041 3.82124 3.87002 3.99038 4.08582 4.25557 4.32958 4.35371 4.47158 4.49835 4.57838 4.58458 4.61796 4.68115 4.79249 4.87448 4.93887 4.95915 5.02408 5.05175 5.12406 5.14355 5.23012 5.26058 5.26317 5.34832 5.48001 5.49777 5.55664 5.62064 5.78611 6.22823 6.66788 7.08894 7.37172 7.86192 8.04770 9.19623 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.044375 B = 0.002772 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.831602 B =10097.285991 C =10123.219122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.144 4.144 3 H 0.102 0.898 4 C -0.177 4.177 5 C -0.156 4.156 6 H 0.085 0.915 7 C -0.098 4.098 8 C 0.508 3.492 9 O -0.589 6.589 10 N -0.713 5.713 11 C 0.151 3.849 12 H 0.064 0.936 13 C -0.106 4.106 14 C -0.117 4.117 15 C 0.175 3.825 16 H 0.047 0.953 17 N -0.754 5.754 18 C -0.226 4.226 19 H 0.056 0.944 20 C -0.068 4.068 21 N -0.986 5.986 22 Si 0.955 3.045 23 H -0.284 1.284 24 H -0.296 1.296 25 H -0.248 1.248 26 C -0.125 4.125 27 C -0.113 4.113 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.107 0.893 32 H 0.086 0.914 33 H 0.119 0.881 34 H 0.120 0.880 35 H 0.418 0.582 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.074 0.926 39 H 0.061 0.939 40 H 0.364 0.636 41 H 0.257 0.743 42 H 0.046 0.954 43 H 0.035 0.965 44 H 0.073 0.927 45 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.105 12.995 25.311 31.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.162 4.162 3 H 0.120 0.880 4 C -0.214 4.214 5 C -0.175 4.175 6 H 0.103 0.897 7 C -0.137 4.137 8 C 0.296 3.704 9 O -0.470 6.470 10 N -0.364 5.364 11 C 0.046 3.954 12 H 0.082 0.918 13 C -0.144 4.144 14 C -0.156 4.156 15 C 0.068 3.932 16 H 0.065 0.935 17 N -0.397 5.397 18 C -0.357 4.357 19 H 0.074 0.926 20 C -0.259 4.259 21 N -0.636 5.636 22 Si 0.782 3.218 23 H -0.210 1.210 24 H -0.222 1.222 25 H -0.173 1.173 26 C -0.166 4.166 27 C -0.152 4.152 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.125 0.875 32 H 0.105 0.895 33 H 0.137 0.863 34 H 0.138 0.862 35 H 0.255 0.745 36 H 0.105 0.895 37 H 0.110 0.890 38 H 0.093 0.907 39 H 0.079 0.921 40 H 0.197 0.803 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.054 0.946 44 H 0.091 0.909 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -12.350 13.145 25.114 30.920 hybrid contribution 1.084 -0.700 -0.523 1.392 sum -11.266 12.445 24.591 29.774 Atomic orbital electron populations 1.21400 0.91200 1.02830 1.02565 1.22504 0.96538 0.93997 1.03205 0.88032 1.23252 1.02679 1.02126 0.93363 1.22066 1.00782 1.00139 0.94478 0.89681 1.21205 0.97321 0.95206 0.99974 1.21296 0.88806 0.81422 0.78875 1.90697 1.17685 1.73240 1.65328 1.45973 1.11414 1.30438 1.48622 1.20823 0.94489 0.89388 0.90696 0.91782 1.21651 0.98795 0.92579 1.01374 1.21705 1.00384 0.99190 0.94317 1.20471 0.92506 0.88565 0.91670 0.93464 1.42849 1.51615 1.42793 1.02399 1.19036 1.19267 1.14721 0.82678 0.92612 1.25518 1.02200 1.02254 0.95962 1.69888 1.45068 1.42558 1.06134 0.85409 0.79081 0.78606 0.78692 1.21024 1.22234 1.17262 1.22016 0.98902 0.97185 0.98499 1.21757 0.99985 0.97695 0.95784 0.91495 0.91529 0.91440 0.87492 0.89516 0.86335 0.86212 0.74498 0.89525 0.88976 0.90719 0.92069 0.80270 0.93447 0.93487 0.94596 0.90876 0.93641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.95 9.19 71.98 0.66 -0.29 16 2 C -0.14 -1.77 6.41 -10.79 -0.07 -1.84 16 3 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 4 C -0.18 -2.46 9.82 30.60 0.30 -2.16 16 5 C -0.16 -2.61 5.42 -10.79 -0.06 -2.67 16 6 H 0.08 2.00 7.30 -2.39 -0.02 1.98 16 7 C -0.10 -1.25 5.06 29.85 0.15 -1.10 16 8 C 0.51 10.82 7.79 87.66 0.68 11.50 16 9 O -0.59 -18.96 15.22 -3.05 -0.05 -19.01 16 10 N -0.71 -12.28 5.08 -442.52 -2.25 -14.53 16 11 C 0.15 3.51 2.45 44.99 0.11 3.62 16 12 H 0.06 1.83 7.58 -2.39 -0.02 1.81 16 13 C -0.11 -2.05 5.39 30.60 0.16 -1.89 16 14 C -0.12 -3.21 5.39 30.60 0.16 -3.04 16 15 C 0.18 6.48 2.77 44.99 0.12 6.60 16 16 H 0.05 1.82 8.08 -2.39 -0.02 1.80 16 17 N -0.75 -35.39 4.93 -322.93 -1.59 -36.98 16 18 C -0.23 -13.02 10.41 84.04 0.87 -12.15 16 19 H 0.06 3.52 8.06 -2.91 -0.02 3.50 16 20 C -0.07 -4.09 5.50 84.86 0.47 -3.62 16 21 N -0.99 -64.19 13.97 21.65 0.30 -63.89 16 22 Si 0.95 46.32 27.73 68.60 1.90 48.22 16 23 H -0.28 -13.65 7.11 99.48 0.71 -12.94 16 24 H -0.30 -14.46 7.11 99.48 0.71 -13.76 16 25 H -0.25 -10.74 6.52 99.48 0.65 -10.09 16 26 C -0.13 -4.52 5.50 30.59 0.17 -4.35 16 27 C -0.11 -3.21 5.50 30.59 0.17 -3.04 16 28 H 0.07 0.40 7.90 -2.39 -0.02 0.38 16 29 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.07 0.46 7.83 -2.39 -0.02 0.44 16 31 H 0.11 1.17 7.94 -2.39 -0.02 1.15 16 32 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.12 1.02 7.77 -2.39 -0.02 1.00 16 34 H 0.12 0.90 7.87 -2.39 -0.02 0.88 16 35 H 0.42 3.94 8.60 -92.71 -0.80 3.15 16 36 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.36 16.44 5.66 -92.71 -0.52 15.91 16 41 H 0.26 15.94 8.31 -92.71 -0.77 15.17 16 42 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 44 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 45 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -76.21 356.74 1.82 -74.40 By element: Atomic # 1 Polarization: 26.63 SS G_CDS: -0.42 Total: 26.21 kcal Atomic # 6 Polarization: -18.34 SS G_CDS: 3.91 Total: -14.42 kcal Atomic # 7 Polarization: -111.87 SS G_CDS: -3.54 Total: -115.40 kcal Atomic # 8 Polarization: -18.96 SS G_CDS: -0.05 Total: -19.01 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 1.90 Total: 48.22 kcal Total: -76.21 1.82 -74.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034724301.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.790 kcal (2) G-P(sol) polarization free energy of solvation -76.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds