Wall clock time and date at job start Tue Mar 31 2020 02:23:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.49823 * 2 1 4 4 C 1.53198 * 109.49740 * 239.94204 * 2 1 3 5 5 N 1.46926 * 108.77416 * 185.37661 * 4 2 1 6 6 C 1.34778 * 120.62819 * 233.62895 * 5 4 2 7 7 O 1.21280 * 120.00314 * 359.97438 * 6 5 4 8 8 C 1.50698 * 119.99794 * 179.97438 * 6 5 4 9 9 C 1.53001 * 109.47091 * 180.02562 * 8 6 5 10 10 C 1.53000 * 109.47154 * 179.97438 * 9 8 6 11 11 C 1.53005 * 117.49817 * 243.61979 * 10 9 8 12 12 C 1.52997 * 117.49911 * 174.99780 * 10 9 8 13 13 C 1.46920 * 118.73951 * 53.61367 * 5 4 2 14 14 C 1.53196 * 108.77435 * 306.38547 * 13 5 4 15 15 C 1.53037 * 109.31040 * 54.63686 * 14 13 5 16 16 H 1.09000 * 109.46257 * 58.65576 * 15 14 13 17 17 N 1.46501 * 109.45789 * 178.61881 * 15 14 13 18 18 C 1.36942 * 119.99525 * 274.99671 * 17 15 14 19 19 H 1.07994 * 120.00259 * 359.97438 * 18 17 15 20 20 C 1.38819 * 119.99618 * 180.02562 * 18 17 15 21 21 N 1.31616 * 120.00052 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99818 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47320 * 59.99422 * 22 20 18 24 24 H 1.48496 * 109.47314 * 180.02562 * 22 20 18 25 25 H 1.48507 * 109.46726 * 299.99956 * 22 20 18 26 26 H 1.09002 * 109.46884 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46746 * 300.05564 * 1 2 3 28 28 H 1.08994 * 109.47535 * 60.05856 * 1 2 3 29 29 H 1.08998 * 109.58454 * 65.59195 * 4 2 1 30 30 H 1.08996 * 109.70366 * 305.23575 * 4 2 1 31 31 H 1.09001 * 109.47247 * 299.99486 * 8 6 5 32 32 H 1.08995 * 109.47466 * 59.99868 * 8 6 5 33 33 H 1.09002 * 109.46989 * 299.99152 * 9 8 6 34 34 H 1.09004 * 109.47436 * 59.99537 * 9 8 6 35 35 H 1.09000 * 115.54982 * 29.32798 * 10 9 8 36 36 H 1.08996 * 117.49498 * 359.97438 * 11 10 9 37 37 H 1.08991 * 117.50096 * 145.01924 * 11 10 9 38 38 H 1.08998 * 117.50010 * 214.97542 * 12 10 9 39 39 H 1.09003 * 117.49948 * 359.97261 * 12 10 9 40 40 H 1.08998 * 109.58534 * 186.60110 * 13 5 4 41 41 H 1.08995 * 109.70522 * 66.24252 * 13 5 4 42 42 H 1.08999 * 109.50112 * 174.59220 * 14 13 5 43 43 H 1.09004 * 109.49641 * 294.68461 * 14 13 5 44 44 H 0.96998 * 120.00238 * 95.00237 * 17 15 14 45 45 H 0.97001 * 119.99908 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7233 -1.2499 5 7 3.5047 -0.8279 -1.1704 6 6 4.2807 -0.3838 -2.1789 7 8 3.7722 0.1074 -3.1643 8 6 5.7802 -0.4975 -2.0821 9 6 6.4180 0.0763 -3.3489 10 6 7.9405 -0.0386 -3.2504 11 6 8.7470 1.2614 -3.2265 12 6 8.7609 0.3752 -4.4737 13 6 4.1060 -1.4254 0.0296 14 6 3.5716 -0.6942 1.2652 15 6 2.0416 -0.7231 1.2480 16 1 1.6980 -1.7574 1.2348 17 7 1.5274 -0.0534 2.4452 18 6 1.3967 -0.7503 3.6167 19 1 1.6723 -1.7937 3.6580 20 6 0.9089 -0.1159 4.7510 21 7 0.5726 1.1556 4.7006 22 14 0.7313 -1.0664 6.3493 23 1 2.0594 -1.5814 6.7692 24 1 0.1925 -0.1683 7.4020 25 1 -0.1998 -2.2054 6.1468 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5147 0.8895 28 1 -0.3634 0.5129 -0.8904 29 1 1.7632 -0.1574 -2.1390 30 1 1.6059 -1.7212 -1.3010 31 1 6.1317 0.0604 -1.2141 32 1 6.0591 -1.5460 -1.9773 33 1 6.0668 -0.4813 -4.2171 34 1 6.1391 1.1249 -3.4533 35 1 8.3115 -0.8724 -2.6543 36 1 8.1930 2.1984 -3.2815 37 1 9.6487 1.2832 -2.6146 38 1 9.6717 -0.1860 -4.6822 39 1 8.2159 0.7289 -5.3490 40 1 5.1902 -1.3228 -0.0153 41 1 3.8410 -2.4811 0.0867 42 1 3.9348 -1.1888 2.1661 43 1 3.9162 0.3398 1.2534 44 1 1.2795 0.8837 2.4081 45 1 0.2315 1.5988 5.4931 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035970739.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:23:36 Heat of formation + Delta-G solvation = -18.440231 kcal Electronic energy + Delta-G solvation = -22306.507535 eV Core-core repulsion = 19131.185270 eV Total energy + Delta-G solvation = -3175.322265 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.14566 -38.06440 -37.36104 -34.59723 -33.08422 -32.08127 -31.42521 -29.31442 -26.90129 -25.30418 -24.14819 -22.70218 -22.57564 -21.64399 -20.64199 -19.79708 -18.75947 -17.12083 -16.92973 -16.04973 -15.71105 -15.38041 -14.95837 -14.41421 -14.05775 -13.95059 -13.77390 -13.40556 -13.29666 -12.77525 -12.49766 -12.42587 -12.07354 -11.80101 -11.68933 -11.58102 -11.50726 -11.36303 -11.15595 -10.93731 -10.81104 -10.63560 -10.50645 -10.40002 -10.24229 -10.08220 -9.76775 -9.63595 -9.59638 -8.91325 -8.44139 -6.98161 -5.79041 -3.07795 2.73490 3.12257 3.41260 3.46098 3.47120 3.57473 4.35797 4.55991 4.61588 4.70599 4.72830 4.98645 5.08520 5.13743 5.26418 5.28003 5.33955 5.37645 5.40863 5.48091 5.53582 5.65274 5.68616 5.69340 5.76799 5.82236 5.88244 5.95708 5.97947 6.08934 6.15380 6.18927 6.30225 6.39544 6.43565 6.54165 6.64735 6.80931 6.92456 7.05045 7.56086 7.66351 8.28777 8.39254 9.50510 10.08207 10.43080 11.43405 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.024913 B = 0.003414 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.633671 B = 8200.667880 C = 8850.339003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.110 4.110 3 H 0.068 0.932 4 C 0.119 3.881 5 N -0.607 5.607 6 C 0.513 3.487 7 O -0.552 6.552 8 C -0.136 4.136 9 C -0.073 4.073 10 C -0.154 4.154 11 C -0.182 4.182 12 C -0.182 4.182 13 C 0.107 3.893 14 C -0.152 4.152 15 C 0.184 3.816 16 H 0.047 0.953 17 N -0.721 5.721 18 C -0.239 4.239 19 H 0.069 0.931 20 C -0.013 4.013 21 N -0.932 5.932 22 Si 0.905 3.095 23 H -0.286 1.286 24 H -0.292 1.292 25 H -0.286 1.286 26 H 0.050 0.950 27 H 0.073 0.927 28 H 0.042 0.958 29 H 0.087 0.913 30 H 0.064 0.936 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.104 0.896 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.078 0.922 41 H 0.067 0.933 42 H 0.076 0.924 43 H 0.059 0.941 44 H 0.384 0.616 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.445 -4.123 -14.858 19.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.130 4.130 3 H 0.087 0.913 4 C -0.003 4.003 5 N -0.340 5.340 6 C 0.301 3.699 7 O -0.431 6.431 8 C -0.176 4.176 9 C -0.111 4.111 10 C -0.172 4.172 11 C -0.219 4.219 12 C -0.219 4.219 13 C -0.017 4.017 14 C -0.194 4.194 15 C 0.074 3.926 16 H 0.065 0.935 17 N -0.361 5.361 18 C -0.370 4.370 19 H 0.087 0.913 20 C -0.209 4.209 21 N -0.581 5.581 22 Si 0.737 3.263 23 H -0.213 1.213 24 H -0.218 1.218 25 H -0.213 1.213 26 H 0.069 0.931 27 H 0.092 0.908 28 H 0.062 0.938 29 H 0.105 0.895 30 H 0.083 0.917 31 H 0.113 0.887 32 H 0.110 0.890 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.123 0.877 36 H 0.113 0.887 37 H 0.111 0.889 38 H 0.110 0.890 39 H 0.112 0.888 40 H 0.096 0.904 41 H 0.085 0.915 42 H 0.094 0.906 43 H 0.078 0.922 44 H 0.218 0.782 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 12.139 -3.980 -15.210 19.863 hybrid contribution -0.072 -0.213 1.193 1.214 sum 12.067 -4.193 -14.017 18.965 Atomic orbital electron populations 1.21656 0.94165 1.01739 1.01814 1.21738 0.96553 1.00020 0.94659 0.91322 1.21688 0.78708 1.00685 0.99263 1.48198 1.07166 1.60389 1.18253 1.20682 0.89505 0.77339 0.82351 1.90661 1.75746 1.45280 1.31414 1.21671 0.91871 1.03349 1.00737 1.20921 0.91066 1.02151 0.96932 1.22365 0.93843 0.98917 1.02047 1.23054 1.02477 0.94990 1.01336 1.22956 1.02152 1.04190 0.92623 1.21867 0.97676 0.97333 0.84796 1.22690 1.00413 1.00413 0.95844 1.20186 0.90354 0.95667 0.86417 0.93465 1.42406 1.76513 1.11405 1.05764 1.19170 1.36032 0.94053 0.87744 0.91300 1.24732 1.02058 0.96021 0.98052 1.69647 1.49893 1.09495 1.29022 0.86298 0.77732 0.78720 0.83595 1.21320 1.21751 1.21314 0.93078 0.90773 0.93848 0.89488 0.91743 0.88720 0.89017 0.90925 0.91076 0.87740 0.88710 0.88940 0.88964 0.88784 0.90408 0.91520 0.90586 0.92201 0.78223 0.93458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.03 37.16 0.34 -1.90 16 2 C -0.11 -1.82 2.46 -90.50 -0.22 -2.04 16 3 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 4 C 0.12 1.76 5.72 -3.71 -0.02 1.74 16 5 N -0.61 -8.47 2.97 -172.77 -0.51 -8.99 16 6 C 0.51 7.24 7.70 -10.99 -0.08 7.16 16 7 O -0.55 -9.61 15.39 5.56 0.09 -9.53 16 8 C -0.14 -1.40 4.00 -27.88 -0.11 -1.51 16 9 C -0.07 -0.74 4.79 -26.73 -0.13 -0.87 16 10 C -0.15 -1.29 5.74 -90.62 -0.52 -1.81 16 11 C -0.18 -1.47 10.18 -26.73 -0.27 -1.74 16 12 C -0.18 -1.42 10.25 -26.73 -0.27 -1.70 16 13 C 0.11 1.34 6.34 -3.71 -0.02 1.31 16 14 C -0.15 -2.48 5.66 -26.61 -0.15 -2.63 16 15 C 0.18 3.44 2.19 -67.89 -0.15 3.29 16 16 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 17 N -0.72 -17.17 4.41 -53.38 -0.24 -17.41 16 18 C -0.24 -6.35 9.93 -15.05 -0.15 -6.50 16 19 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 20 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 21 N -0.93 -27.58 13.06 55.49 0.72 -26.86 16 22 Si 0.91 21.90 29.55 -169.99 -5.02 16.87 16 23 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 24 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 25 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 26 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.07 1.42 7.37 -51.93 -0.38 1.04 16 28 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.09 1.35 7.00 -51.93 -0.36 0.99 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.09 0.90 7.69 -51.93 -0.40 0.50 16 32 H 0.09 0.77 7.94 -51.93 -0.41 0.35 16 33 H 0.07 0.79 8.10 -51.93 -0.42 0.37 16 34 H 0.07 0.82 7.83 -51.93 -0.41 0.41 16 35 H 0.10 0.78 8.07 -51.93 -0.42 0.36 16 36 H 0.09 0.79 8.03 -51.93 -0.42 0.37 16 37 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.08 0.78 5.93 -51.93 -0.31 0.48 16 41 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 43 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.38 9.92 7.51 -40.82 -0.31 9.61 16 45 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 357.30 15.07 5.38 5.38 Total: -1.00 -30.45 357.30 -9.47 -39.92 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: -8.03 Total: 8.24 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: -1.87 Total: -7.64 kcal Atomic # 7 Polarization: -53.23 SS G_CDS: -0.02 Total: -53.25 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: 0.09 Total: -9.53 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.45 -9.47 -39.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035970739.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.481 kcal (2) G-P(sol) polarization free energy of solvation -30.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds