Wall clock time and date at job start Tue Mar 31 2020 02:23:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.49823 * 2 1 4 4 C 1.53198 * 109.49740 * 239.94204 * 2 1 3 5 5 N 1.46926 * 108.77416 * 185.37661 * 4 2 1 6 6 C 1.34778 * 120.62819 * 233.62895 * 5 4 2 7 7 O 1.21280 * 120.00314 * 359.97438 * 6 5 4 8 8 C 1.50698 * 119.99794 * 179.97438 * 6 5 4 9 9 C 1.53001 * 109.47091 * 180.02562 * 8 6 5 10 10 C 1.53000 * 109.47154 * 179.97438 * 9 8 6 11 11 C 1.53005 * 117.49817 * 243.61979 * 10 9 8 12 12 C 1.52997 * 117.49911 * 174.99780 * 10 9 8 13 13 C 1.46920 * 118.73951 * 53.61367 * 5 4 2 14 14 C 1.53196 * 108.77435 * 306.38547 * 13 5 4 15 15 C 1.53037 * 109.31040 * 54.63686 * 14 13 5 16 16 H 1.09000 * 109.46257 * 58.65576 * 15 14 13 17 17 N 1.46501 * 109.45789 * 178.61881 * 15 14 13 18 18 C 1.36942 * 119.99525 * 274.99671 * 17 15 14 19 19 H 1.07994 * 120.00259 * 359.97438 * 18 17 15 20 20 C 1.38819 * 119.99618 * 180.02562 * 18 17 15 21 21 N 1.31616 * 120.00052 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99818 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47320 * 59.99422 * 22 20 18 24 24 H 1.48496 * 109.47314 * 180.02562 * 22 20 18 25 25 H 1.48507 * 109.46726 * 299.99956 * 22 20 18 26 26 H 1.09002 * 109.46884 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46746 * 300.05564 * 1 2 3 28 28 H 1.08994 * 109.47535 * 60.05856 * 1 2 3 29 29 H 1.08998 * 109.58454 * 65.59195 * 4 2 1 30 30 H 1.08996 * 109.70366 * 305.23575 * 4 2 1 31 31 H 1.09001 * 109.47247 * 299.99486 * 8 6 5 32 32 H 1.08995 * 109.47466 * 59.99868 * 8 6 5 33 33 H 1.09002 * 109.46989 * 299.99152 * 9 8 6 34 34 H 1.09004 * 109.47436 * 59.99537 * 9 8 6 35 35 H 1.09000 * 115.54982 * 29.32798 * 10 9 8 36 36 H 1.08996 * 117.49498 * 359.97438 * 11 10 9 37 37 H 1.08991 * 117.50096 * 145.01924 * 11 10 9 38 38 H 1.08998 * 117.50010 * 214.97542 * 12 10 9 39 39 H 1.09003 * 117.49948 * 359.97261 * 12 10 9 40 40 H 1.08998 * 109.58534 * 186.60110 * 13 5 4 41 41 H 1.08995 * 109.70522 * 66.24252 * 13 5 4 42 42 H 1.08999 * 109.50112 * 174.59220 * 14 13 5 43 43 H 1.09004 * 109.49641 * 294.68461 * 14 13 5 44 44 H 0.96998 * 120.00238 * 95.00237 * 17 15 14 45 45 H 0.97001 * 119.99908 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7233 -1.2499 5 7 3.5047 -0.8279 -1.1704 6 6 4.2807 -0.3838 -2.1789 7 8 3.7722 0.1074 -3.1643 8 6 5.7802 -0.4975 -2.0821 9 6 6.4180 0.0763 -3.3489 10 6 7.9405 -0.0386 -3.2504 11 6 8.7470 1.2614 -3.2265 12 6 8.7609 0.3752 -4.4737 13 6 4.1060 -1.4254 0.0296 14 6 3.5716 -0.6942 1.2652 15 6 2.0416 -0.7231 1.2480 16 1 1.6980 -1.7574 1.2348 17 7 1.5274 -0.0534 2.4452 18 6 1.3967 -0.7503 3.6167 19 1 1.6723 -1.7937 3.6580 20 6 0.9089 -0.1159 4.7510 21 7 0.5726 1.1556 4.7006 22 14 0.7313 -1.0664 6.3493 23 1 2.0594 -1.5814 6.7692 24 1 0.1925 -0.1683 7.4020 25 1 -0.1998 -2.2054 6.1468 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5147 0.8895 28 1 -0.3634 0.5129 -0.8904 29 1 1.7632 -0.1574 -2.1390 30 1 1.6059 -1.7212 -1.3010 31 1 6.1317 0.0604 -1.2141 32 1 6.0591 -1.5460 -1.9773 33 1 6.0668 -0.4813 -4.2171 34 1 6.1391 1.1249 -3.4533 35 1 8.3115 -0.8724 -2.6543 36 1 8.1930 2.1984 -3.2815 37 1 9.6487 1.2832 -2.6146 38 1 9.6717 -0.1860 -4.6822 39 1 8.2159 0.7289 -5.3490 40 1 5.1902 -1.3228 -0.0153 41 1 3.8410 -2.4811 0.0867 42 1 3.9348 -1.1888 2.1661 43 1 3.9162 0.3398 1.2534 44 1 1.2795 0.8837 2.4081 45 1 0.2315 1.5988 5.4931 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035970739.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:23:35 Heat of formation + Delta-G solvation = -35.358906 kcal Electronic energy + Delta-G solvation = -22307.241184 eV Core-core repulsion = 19131.185270 eV Total energy + Delta-G solvation = -3176.055914 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.30024 -39.18990 -38.25644 -36.14739 -34.55194 -33.26546 -32.77821 -30.99454 -28.06228 -26.83083 -25.40967 -24.11539 -23.18491 -23.05095 -21.39198 -21.12114 -19.93830 -19.01470 -18.05133 -16.99301 -16.76744 -16.73128 -16.18953 -15.70600 -15.49176 -15.22357 -14.91701 -14.89116 -14.44419 -14.16853 -13.74962 -13.67859 -13.19512 -13.11031 -12.82452 -12.78022 -12.68693 -12.48400 -12.40730 -12.22044 -12.19375 -12.09829 -12.01477 -11.83503 -11.64790 -11.18114 -11.14275 -10.89173 -10.75813 -10.67118 -9.63019 -8.95493 -7.90100 -5.17745 1.49300 1.51460 1.57346 1.64857 2.05187 2.58983 2.94452 3.42842 3.50201 3.80155 3.81220 3.85079 4.04331 4.06937 4.09618 4.12218 4.30489 4.33380 4.38974 4.43376 4.52164 4.62518 4.67527 4.73900 4.80540 4.83117 4.84514 4.86843 5.00781 5.02845 5.06841 5.09035 5.16566 5.20863 5.30423 5.33807 5.40565 5.46858 5.52646 5.57787 5.66378 6.31129 6.46912 7.19139 7.37578 8.14084 8.37169 9.33400 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.024913 B = 0.003414 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.633671 B = 8200.667880 C = 8850.339003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.100 4.100 3 H 0.050 0.950 4 C 0.126 3.874 5 N -0.610 5.610 6 C 0.507 3.493 7 O -0.591 6.591 8 C -0.129 4.129 9 C -0.069 4.069 10 C -0.154 4.154 11 C -0.186 4.186 12 C -0.183 4.183 13 C 0.114 3.886 14 C -0.144 4.144 15 C 0.179 3.821 16 H 0.048 0.952 17 N -0.733 5.733 18 C -0.230 4.230 19 H 0.078 0.922 20 C -0.078 4.078 21 N -0.972 5.972 22 Si 0.969 3.031 23 H -0.277 1.277 24 H -0.301 1.301 25 H -0.279 1.279 26 H 0.058 0.942 27 H 0.040 0.960 28 H 0.062 0.938 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.108 0.892 32 H 0.122 0.878 33 H 0.061 0.939 34 H 0.050 0.950 35 H 0.122 0.878 36 H 0.086 0.914 37 H 0.104 0.896 38 H 0.106 0.894 39 H 0.088 0.912 40 H 0.112 0.888 41 H 0.086 0.914 42 H 0.068 0.932 43 H 0.044 0.956 44 H 0.370 0.630 45 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.356 -6.301 -15.380 21.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.120 4.120 3 H 0.068 0.932 4 C 0.002 3.998 5 N -0.341 5.341 6 C 0.298 3.702 7 O -0.472 6.472 8 C -0.169 4.169 9 C -0.107 4.107 10 C -0.172 4.172 11 C -0.223 4.223 12 C -0.219 4.219 13 C -0.008 4.008 14 C -0.185 4.185 15 C 0.070 3.930 16 H 0.066 0.934 17 N -0.371 5.371 18 C -0.362 4.362 19 H 0.096 0.904 20 C -0.270 4.270 21 N -0.623 5.623 22 Si 0.798 3.202 23 H -0.203 1.203 24 H -0.228 1.228 25 H -0.206 1.206 26 H 0.077 0.923 27 H 0.059 0.941 28 H 0.081 0.919 29 H 0.097 0.903 30 H 0.099 0.901 31 H 0.126 0.874 32 H 0.140 0.860 33 H 0.080 0.920 34 H 0.069 0.931 35 H 0.140 0.860 36 H 0.104 0.896 37 H 0.122 0.878 38 H 0.124 0.876 39 H 0.107 0.893 40 H 0.131 0.869 41 H 0.104 0.896 42 H 0.087 0.913 43 H 0.063 0.937 44 H 0.201 0.799 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 14.086 -6.209 -15.759 22.030 hybrid contribution -0.674 0.472 1.257 1.503 sum 13.412 -5.737 -14.502 20.569 Atomic orbital electron populations 1.21575 0.94149 1.01985 1.01090 1.21605 0.96562 0.98999 0.94830 0.93182 1.21540 0.79749 1.01046 0.97427 1.48293 1.06760 1.60338 1.18753 1.21401 0.91061 0.76161 0.81577 1.90649 1.76723 1.46851 1.32977 1.21723 0.88624 1.05422 1.01092 1.20837 0.92524 1.00679 0.96675 1.22353 0.92451 0.99613 1.02773 1.23109 1.02797 0.94597 1.01805 1.23034 1.02518 1.04081 0.92310 1.21925 0.99431 0.97424 0.82033 1.22485 0.98109 1.00131 0.97761 1.20431 0.91999 0.95223 0.85300 0.93416 1.42602 1.76960 1.10823 1.06763 1.19570 1.33763 0.94417 0.88477 0.90369 1.25504 1.03207 0.96918 1.01353 1.69816 1.52024 1.11171 1.29327 0.85279 0.77943 0.77313 0.79641 1.20282 1.22800 1.20564 0.92280 0.94118 0.91906 0.90269 0.90086 0.87373 0.85999 0.92010 0.93148 0.85993 0.89569 0.87776 0.87553 0.89337 0.86947 0.89562 0.91327 0.93700 0.79890 0.94299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.27 9.03 71.98 0.65 -3.62 16 2 C -0.10 -3.28 2.46 -10.71 -0.03 -3.31 16 3 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 4 C 0.13 3.51 5.72 86.36 0.49 4.01 16 5 N -0.61 -15.55 2.97 -818.92 -2.43 -17.99 16 6 C 0.51 13.34 7.70 87.66 0.67 14.01 16 7 O -0.59 -20.19 15.39 -3.03 -0.05 -20.23 16 8 C -0.13 -2.25 4.00 29.85 0.12 -2.13 16 9 C -0.07 -1.30 4.79 30.59 0.15 -1.15 16 10 C -0.15 -2.20 5.74 -10.79 -0.06 -2.27 16 11 C -0.19 -2.67 10.18 30.60 0.31 -2.36 16 12 C -0.18 -2.50 10.25 30.59 0.31 -2.19 16 13 C 0.11 2.47 6.34 86.37 0.55 3.02 16 14 C -0.14 -4.45 5.66 30.67 0.17 -4.28 16 15 C 0.18 6.56 2.19 45.02 0.10 6.66 16 16 H 0.05 1.76 8.08 -2.39 -0.02 1.74 16 17 N -0.73 -35.34 4.41 -322.81 -1.42 -36.76 16 18 C -0.23 -12.22 9.93 84.03 0.83 -11.39 16 19 H 0.08 3.93 7.83 -2.91 -0.02 3.91 16 20 C -0.08 -4.37 5.50 84.86 0.47 -3.91 16 21 N -0.97 -59.02 13.06 21.65 0.28 -58.73 16 22 Si 0.97 45.23 29.55 68.60 2.03 47.25 16 23 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 24 H -0.30 -14.43 7.11 99.48 0.71 -13.73 16 25 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 26 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.04 1.60 7.37 -2.39 -0.02 1.58 16 28 H 0.06 1.78 8.14 -2.39 -0.02 1.77 16 29 H 0.08 2.39 7.00 -2.39 -0.02 2.37 16 30 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.11 1.66 7.69 -2.39 -0.02 1.64 16 32 H 0.12 1.44 7.94 -2.39 -0.02 1.43 16 33 H 0.06 1.28 8.10 -2.39 -0.02 1.26 16 34 H 0.05 1.14 7.83 -2.39 -0.02 1.12 16 35 H 0.12 1.35 8.07 -2.39 -0.02 1.33 16 36 H 0.09 1.37 8.03 -2.39 -0.02 1.35 16 37 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.11 1.72 5.93 -2.39 -0.01 1.70 16 41 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 43 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 44 H 0.37 19.76 7.51 -92.71 -0.70 19.07 16 45 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 Total: -1.00 -67.17 357.30 3.40 -63.76 By element: Atomic # 1 Polarization: 31.35 SS G_CDS: 0.26 Total: 31.61 kcal Atomic # 6 Polarization: -13.65 SS G_CDS: 4.74 Total: -8.91 kcal Atomic # 7 Polarization: -109.91 SS G_CDS: -3.57 Total: -113.48 kcal Atomic # 8 Polarization: -20.19 SS G_CDS: -0.05 Total: -20.23 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.25 kcal Total: -67.17 3.40 -63.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035970739.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.406 kcal (2) G-P(sol) polarization free energy of solvation -67.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds