Wall clock time and date at job start Tue Mar 31 2020 02:23:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.50229 * 2 1 4 4 C 1.52769 * 109.59105 * 240.04830 * 2 1 3 5 5 N 1.46924 * 109.00680 * 185.53619 * 4 2 1 6 6 C 1.34777 * 120.63156 * 233.58377 * 5 4 2 7 7 O 1.21282 * 119.99620 * 359.71747 * 6 5 4 8 8 C 1.50697 * 120.00369 * 179.72355 * 6 5 4 9 9 C 1.52997 * 109.47466 * 180.02562 * 8 6 5 10 10 C 1.53000 * 109.47060 * 180.02562 * 9 8 6 11 11 C 1.53003 * 117.49371 * 243.61962 * 10 9 8 12 12 C 1.53001 * 117.49608 * 175.00037 * 10 9 8 13 13 C 1.46925 * 118.74023 * 53.31435 * 5 4 2 14 14 C 1.53202 * 108.77226 * 306.64001 * 13 5 4 15 15 C 1.53040 * 109.31031 * 54.63723 * 14 13 5 16 16 H 1.08999 * 109.45644 * 178.61755 * 15 14 13 17 17 N 1.46490 * 109.46416 * 58.65618 * 15 14 13 18 18 C 1.36937 * 120.00491 * 84.99481 * 17 15 14 19 19 H 1.08008 * 119.99590 * 0.02562 * 18 17 15 20 20 C 1.38807 * 120.00382 * 180.02562 * 18 17 15 21 21 N 1.31624 * 119.99771 * 180.02562 * 20 18 17 22 22 Si 1.86796 * 120.00213 * 0.02562 * 20 18 17 23 23 H 1.48499 * 109.47073 * 90.00045 * 22 20 18 24 24 H 1.48497 * 109.47464 * 209.99976 * 22 20 18 25 25 H 1.48499 * 109.46937 * 330.00394 * 22 20 18 26 26 H 1.08993 * 109.47156 * 299.93415 * 1 2 3 27 27 H 1.09005 * 109.46883 * 59.93646 * 1 2 3 28 28 H 1.09005 * 109.47087 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.50855 * 65.65830 * 4 2 1 30 30 H 1.08996 * 109.42940 * 305.37404 * 4 2 1 31 31 H 1.09002 * 109.47120 * 59.99760 * 8 6 5 32 32 H 1.08998 * 109.46862 * 300.00562 * 8 6 5 33 33 H 1.09002 * 109.47153 * 59.99773 * 9 8 6 34 34 H 1.09001 * 109.46832 * 299.99964 * 9 8 6 35 35 H 1.08995 * 115.55630 * 29.32647 * 10 9 8 36 36 H 1.08998 * 117.50656 * 0.02562 * 11 10 9 37 37 H 1.09001 * 117.49674 * 145.02590 * 11 10 9 38 38 H 1.09003 * 117.49710 * 214.97494 * 12 10 9 39 39 H 1.09000 * 117.50278 * 359.97438 * 12 10 9 40 40 H 1.08993 * 109.59194 * 66.42548 * 13 5 4 41 41 H 1.08995 * 109.58746 * 186.71347 * 13 5 4 42 42 H 1.09000 * 109.49272 * 174.58609 * 14 13 5 43 43 H 1.08998 * 109.49349 * 294.65121 * 14 13 5 44 44 H 0.97003 * 119.99869 * 264.99893 * 17 15 14 45 45 H 0.97007 * 119.99584 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0422 -0.7186 -1.2470 5 7 3.5053 -0.8283 -1.1690 6 6 4.2819 -0.3845 -2.1772 7 8 3.7739 0.1065 -3.1630 8 6 5.7814 -0.4984 -2.0796 9 6 6.4200 0.0751 -3.3461 10 6 7.9424 -0.0411 -3.2472 11 6 8.7499 1.2582 -3.2229 12 6 8.7633 0.3723 -4.4703 13 6 4.1059 -1.4256 0.0315 14 6 3.5708 -0.6940 1.2666 15 6 2.0408 -0.7229 1.2485 16 1 1.6577 -0.2244 2.1389 17 7 1.5789 -2.1130 1.2309 18 6 1.4474 -2.8058 2.4047 19 1 1.6838 -2.3271 3.3437 20 6 1.0103 -4.1231 2.3880 21 7 0.8835 -4.7888 3.5164 22 14 0.6021 -4.9512 0.7642 23 1 1.8191 -5.6090 0.2243 24 1 -0.4565 -5.9699 0.9803 25 1 0.1193 -3.9331 -0.2030 26 1 -0.3633 0.5128 0.8905 27 1 -0.3633 0.5148 -0.8895 28 1 -0.3633 -1.0277 -0.0005 29 1 1.7653 -0.1496 -2.1345 30 1 1.6032 -1.7149 -1.2974 31 1 6.0601 -1.5469 -1.9745 32 1 6.1324 0.0595 -1.2114 33 1 6.1413 1.1237 -3.4507 34 1 6.0690 -0.4825 -4.2144 35 1 8.3125 -0.8753 -2.6512 36 1 8.1967 2.1958 -3.2769 37 1 9.6516 1.2790 -2.6107 38 1 9.6738 -0.1897 -4.6787 39 1 8.2189 0.7267 -5.3456 40 1 3.8387 -2.4808 0.0875 41 1 5.1903 -1.3252 -0.0140 42 1 3.9334 -1.1886 2.1677 43 1 3.9159 0.3398 1.2549 44 1 1.3663 -2.5428 0.3877 45 1 0.5784 -5.7095 3.5047 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035970745.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:23:41 Heat of formation + Delta-G solvation = -12.002400 kcal Electronic energy + Delta-G solvation = -22790.373963 eV Core-core repulsion = 19615.330863 eV Total energy + Delta-G solvation = -3175.043100 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.19665 -38.20401 -37.43549 -34.40532 -33.10401 -32.10296 -31.48880 -29.76466 -26.93611 -25.52871 -24.01240 -23.15096 -22.59294 -21.69031 -20.62920 -19.54537 -18.19283 -17.87955 -16.86789 -16.04084 -15.70023 -15.38873 -14.83556 -14.53084 -14.32480 -13.98479 -13.75275 -13.53456 -13.30676 -12.79149 -12.58983 -12.42970 -12.27001 -11.80212 -11.69021 -11.58159 -11.51944 -11.39308 -11.34966 -11.02607 -10.95747 -10.63000 -10.53560 -10.47624 -10.23718 -10.07351 -9.87909 -9.59466 -9.56497 -8.98044 -8.34832 -7.31232 -5.81734 -3.17027 2.77149 3.16688 3.32009 3.35046 3.41704 3.57895 4.37785 4.53864 4.63637 4.71463 4.73553 4.99678 5.08109 5.13132 5.19140 5.22935 5.34194 5.35250 5.40451 5.44493 5.55204 5.60945 5.63861 5.68713 5.76554 5.81303 5.87119 5.87955 5.93209 5.97496 6.07463 6.19387 6.21035 6.29080 6.36798 6.47944 6.55691 6.65336 6.74078 6.88436 7.62475 7.94744 8.32385 8.37509 9.15696 9.88387 10.08324 11.36672 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.022267 B = 0.004141 C = 0.003936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.152839 B = 6760.404985 C = 7112.709941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.112 4.112 3 H 0.070 0.930 4 C 0.117 3.883 5 N -0.606 5.606 6 C 0.512 3.488 7 O -0.555 6.555 8 C -0.136 4.136 9 C -0.072 4.072 10 C -0.153 4.153 11 C -0.182 4.182 12 C -0.182 4.182 13 C 0.111 3.889 14 C -0.150 4.150 15 C 0.185 3.815 16 H 0.060 0.940 17 N -0.744 5.744 18 C -0.241 4.241 19 H 0.091 0.909 20 C 0.007 3.993 21 N -0.933 5.933 22 Si 0.878 3.122 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.278 1.278 26 H 0.058 0.942 27 H 0.045 0.955 28 H 0.064 0.936 29 H 0.086 0.914 30 H 0.065 0.935 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.105 0.895 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.079 0.921 41 H 0.075 0.925 42 H 0.079 0.921 43 H 0.052 0.948 44 H 0.360 0.640 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.832 10.792 -11.380 19.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.132 4.132 3 H 0.089 0.911 4 C -0.005 4.005 5 N -0.338 5.338 6 C 0.300 3.700 7 O -0.434 6.434 8 C -0.176 4.176 9 C -0.110 4.110 10 C -0.171 4.171 11 C -0.219 4.219 12 C -0.219 4.219 13 C -0.011 4.011 14 C -0.191 4.191 15 C 0.075 3.925 16 H 0.078 0.922 17 N -0.388 5.388 18 C -0.370 4.370 19 H 0.108 0.892 20 C -0.189 4.189 21 N -0.581 5.581 22 Si 0.709 3.291 23 H -0.211 1.211 24 H -0.217 1.217 25 H -0.204 1.204 26 H 0.077 0.923 27 H 0.064 0.936 28 H 0.083 0.917 29 H 0.104 0.896 30 H 0.083 0.917 31 H 0.111 0.889 32 H 0.112 0.888 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.123 0.877 36 H 0.112 0.888 37 H 0.110 0.890 38 H 0.111 0.889 39 H 0.112 0.888 40 H 0.097 0.903 41 H 0.093 0.907 42 H 0.098 0.902 43 H 0.071 0.929 44 H 0.194 0.806 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 11.538 10.958 -11.642 19.717 hybrid contribution -0.264 -0.887 -0.877 1.275 sum 11.274 10.071 -12.519 19.628 Atomic orbital electron populations 1.21678 0.94221 1.02823 1.00890 1.21673 0.96523 0.99298 0.95680 0.91136 1.21526 0.79129 1.00953 0.98921 1.48193 1.06980 1.60115 1.18498 1.20679 0.89507 0.77387 0.82380 1.90652 1.75792 1.45642 1.31331 1.21667 0.91860 1.03501 1.00580 1.20914 0.91050 1.02018 0.97022 1.22372 0.93840 0.98874 1.02052 1.23045 1.02459 0.94954 1.01411 1.22956 1.02190 1.04149 0.92608 1.21756 0.96884 0.98603 0.83860 1.22499 0.99963 0.98996 0.97618 1.20176 0.90984 0.86136 0.95214 0.92239 1.42845 1.80616 1.09438 1.05852 1.19056 1.37608 0.94058 0.86320 0.89165 1.24636 1.01532 0.96731 0.96023 1.69694 1.53155 1.10829 1.24420 0.86661 0.78185 0.79575 0.84718 1.21147 1.21713 1.20413 0.92332 0.93555 0.91654 0.89570 0.91701 0.88920 0.88810 0.91153 0.90929 0.87691 0.88783 0.88970 0.88943 0.88798 0.90297 0.90683 0.90197 0.92913 0.80587 0.93065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 9.06 37.16 0.34 -1.76 16 2 C -0.11 -1.73 2.65 -90.72 -0.24 -1.97 16 3 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 4 C 0.12 1.88 5.40 -3.93 -0.02 1.86 16 5 N -0.61 -9.15 2.98 -173.03 -0.52 -9.66 16 6 C 0.51 7.58 7.70 -10.99 -0.08 7.50 16 7 O -0.56 -9.92 15.40 5.56 0.09 -9.83 16 8 C -0.14 -1.48 4.00 -27.89 -0.11 -1.59 16 9 C -0.07 -0.76 4.78 -26.73 -0.13 -0.89 16 10 C -0.15 -1.34 5.74 -90.62 -0.52 -1.86 16 11 C -0.18 -1.45 10.18 -26.73 -0.27 -1.73 16 12 C -0.18 -1.46 10.25 -26.73 -0.27 -1.74 16 13 C 0.11 1.61 6.09 -3.71 -0.02 1.59 16 14 C -0.15 -2.31 5.78 -26.61 -0.15 -2.46 16 15 C 0.18 3.26 2.53 -67.89 -0.17 3.09 16 16 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 17 N -0.74 -16.07 3.44 -53.39 -0.18 -16.26 16 18 C -0.24 -6.33 10.41 -15.06 -0.16 -6.49 16 19 H 0.09 2.56 8.06 -52.48 -0.42 2.14 16 20 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 21 N -0.93 -28.40 13.97 55.49 0.78 -27.62 16 22 Si 0.88 21.47 27.74 -169.99 -4.71 16.76 16 23 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 24 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 25 H -0.28 -6.42 6.52 56.52 0.37 -6.05 16 26 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.06 1.13 7.54 -51.93 -0.39 0.74 16 29 H 0.09 1.40 7.01 -51.93 -0.36 1.03 16 30 H 0.06 1.12 6.64 -51.93 -0.34 0.78 16 31 H 0.09 0.90 7.94 -51.93 -0.41 0.49 16 32 H 0.09 0.89 7.69 -51.93 -0.40 0.49 16 33 H 0.07 0.80 7.83 -51.93 -0.41 0.40 16 34 H 0.07 0.84 8.10 -51.93 -0.42 0.42 16 35 H 0.10 0.85 8.07 -51.93 -0.42 0.43 16 36 H 0.09 0.75 8.03 -51.93 -0.42 0.34 16 37 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.08 1.32 7.74 -51.93 -0.40 0.92 16 41 H 0.07 0.86 5.93 -51.93 -0.31 0.56 16 42 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 43 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.36 7.86 3.80 -40.82 -0.16 7.71 16 45 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 350.23 15.07 5.28 5.28 Total: -1.00 -30.58 350.23 -9.03 -39.61 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: -7.83 Total: 8.09 kcal Atomic # 6 Polarization: -4.44 SS G_CDS: -1.92 Total: -6.35 kcal Atomic # 7 Polarization: -53.62 SS G_CDS: 0.08 Total: -53.54 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: 0.09 Total: -9.83 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.71 Total: 16.76 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.58 -9.03 -39.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035970745.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.605 kcal (2) G-P(sol) polarization free energy of solvation -30.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds