Wall clock time and date at job start Tue Mar 31 2020 02:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.50229 * 2 1 4 4 C 1.52769 * 109.59105 * 240.04830 * 2 1 3 5 5 N 1.46924 * 109.00680 * 185.53619 * 4 2 1 6 6 C 1.34777 * 120.63156 * 233.58377 * 5 4 2 7 7 O 1.21282 * 119.99620 * 359.71747 * 6 5 4 8 8 C 1.50697 * 120.00369 * 179.72355 * 6 5 4 9 9 C 1.52997 * 109.47466 * 180.02562 * 8 6 5 10 10 C 1.53000 * 109.47060 * 180.02562 * 9 8 6 11 11 C 1.53003 * 117.49371 * 243.61962 * 10 9 8 12 12 C 1.53001 * 117.49608 * 175.00037 * 10 9 8 13 13 C 1.46925 * 118.74023 * 53.31435 * 5 4 2 14 14 C 1.53202 * 108.77226 * 306.64001 * 13 5 4 15 15 C 1.53040 * 109.31031 * 54.63723 * 14 13 5 16 16 H 1.08999 * 109.45644 * 178.61755 * 15 14 13 17 17 N 1.46490 * 109.46416 * 58.65618 * 15 14 13 18 18 C 1.36937 * 120.00491 * 84.99481 * 17 15 14 19 19 H 1.08008 * 119.99590 * 0.02562 * 18 17 15 20 20 C 1.38807 * 120.00382 * 180.02562 * 18 17 15 21 21 N 1.31624 * 119.99771 * 180.02562 * 20 18 17 22 22 Si 1.86796 * 120.00213 * 0.02562 * 20 18 17 23 23 H 1.48499 * 109.47073 * 90.00045 * 22 20 18 24 24 H 1.48497 * 109.47464 * 209.99976 * 22 20 18 25 25 H 1.48499 * 109.46937 * 330.00394 * 22 20 18 26 26 H 1.08993 * 109.47156 * 299.93415 * 1 2 3 27 27 H 1.09005 * 109.46883 * 59.93646 * 1 2 3 28 28 H 1.09005 * 109.47087 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.50855 * 65.65830 * 4 2 1 30 30 H 1.08996 * 109.42940 * 305.37404 * 4 2 1 31 31 H 1.09002 * 109.47120 * 59.99760 * 8 6 5 32 32 H 1.08998 * 109.46862 * 300.00562 * 8 6 5 33 33 H 1.09002 * 109.47153 * 59.99773 * 9 8 6 34 34 H 1.09001 * 109.46832 * 299.99964 * 9 8 6 35 35 H 1.08995 * 115.55630 * 29.32647 * 10 9 8 36 36 H 1.08998 * 117.50656 * 0.02562 * 11 10 9 37 37 H 1.09001 * 117.49674 * 145.02590 * 11 10 9 38 38 H 1.09003 * 117.49710 * 214.97494 * 12 10 9 39 39 H 1.09000 * 117.50278 * 359.97438 * 12 10 9 40 40 H 1.08993 * 109.59194 * 66.42548 * 13 5 4 41 41 H 1.08995 * 109.58746 * 186.71347 * 13 5 4 42 42 H 1.09000 * 109.49272 * 174.58609 * 14 13 5 43 43 H 1.08998 * 109.49349 * 294.65121 * 14 13 5 44 44 H 0.97003 * 119.99869 * 264.99893 * 17 15 14 45 45 H 0.97007 * 119.99584 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0422 -0.7186 -1.2470 5 7 3.5053 -0.8283 -1.1690 6 6 4.2819 -0.3845 -2.1772 7 8 3.7739 0.1065 -3.1630 8 6 5.7814 -0.4984 -2.0796 9 6 6.4200 0.0751 -3.3461 10 6 7.9424 -0.0411 -3.2472 11 6 8.7499 1.2582 -3.2229 12 6 8.7633 0.3723 -4.4703 13 6 4.1059 -1.4256 0.0315 14 6 3.5708 -0.6940 1.2666 15 6 2.0408 -0.7229 1.2485 16 1 1.6577 -0.2244 2.1389 17 7 1.5789 -2.1130 1.2309 18 6 1.4474 -2.8058 2.4047 19 1 1.6838 -2.3271 3.3437 20 6 1.0103 -4.1231 2.3880 21 7 0.8835 -4.7888 3.5164 22 14 0.6021 -4.9512 0.7642 23 1 1.8191 -5.6090 0.2243 24 1 -0.4565 -5.9699 0.9803 25 1 0.1193 -3.9331 -0.2030 26 1 -0.3633 0.5128 0.8905 27 1 -0.3633 0.5148 -0.8895 28 1 -0.3633 -1.0277 -0.0005 29 1 1.7653 -0.1496 -2.1345 30 1 1.6032 -1.7149 -1.2974 31 1 6.0601 -1.5469 -1.9745 32 1 6.1324 0.0595 -1.2114 33 1 6.1413 1.1237 -3.4507 34 1 6.0690 -0.4825 -4.2144 35 1 8.3125 -0.8753 -2.6512 36 1 8.1967 2.1958 -3.2769 37 1 9.6516 1.2790 -2.6107 38 1 9.6738 -0.1897 -4.6787 39 1 8.2189 0.7267 -5.3456 40 1 3.8387 -2.4808 0.0875 41 1 5.1903 -1.3252 -0.0140 42 1 3.9334 -1.1886 2.1677 43 1 3.9159 0.3398 1.2549 44 1 1.3663 -2.5428 0.3877 45 1 0.5784 -5.7095 3.5047 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035970745.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:23:40 Heat of formation + Delta-G solvation = -28.974738 kcal Electronic energy + Delta-G solvation = -22791.109939 eV Core-core repulsion = 19615.330863 eV Total energy + Delta-G solvation = -3175.779075 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.41078 -39.38053 -38.27590 -35.93832 -34.60981 -33.33634 -32.84030 -31.44308 -28.08599 -26.88585 -25.22720 -24.77802 -23.18561 -23.02658 -21.34828 -20.79056 -19.86742 -19.46254 -18.03313 -17.03072 -16.85236 -16.56991 -16.25322 -15.94599 -15.53580 -15.19096 -15.09180 -14.84298 -14.50459 -14.37407 -13.95132 -13.65404 -13.38120 -13.24813 -12.97015 -12.81098 -12.66886 -12.47191 -12.41069 -12.23256 -12.12315 -12.03734 -11.95344 -11.93195 -11.68186 -11.21587 -11.17928 -10.93757 -10.77030 -10.68642 -9.63134 -9.23597 -7.98469 -5.29193 1.36851 1.37397 1.44843 1.63370 2.02127 2.48923 2.94311 3.33739 3.48008 3.61811 3.79222 3.83165 3.99098 4.03171 4.06742 4.08520 4.24925 4.32207 4.34955 4.38343 4.49428 4.60630 4.63413 4.69219 4.75729 4.80166 4.83090 4.97329 4.99858 5.06329 5.08868 5.11116 5.15056 5.19907 5.26564 5.29796 5.30706 5.42165 5.46202 5.63237 5.84292 6.25820 6.46475 7.12429 7.16791 7.89481 8.07580 9.23445 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.022267 B = 0.004141 C = 0.003936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.152839 B = 6760.404985 C = 7112.709941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.101 4.101 3 H 0.089 0.911 4 C 0.118 3.882 5 N -0.606 5.606 6 C 0.509 3.491 7 O -0.589 6.589 8 C -0.130 4.130 9 C -0.067 4.067 10 C -0.157 4.157 11 C -0.179 4.179 12 C -0.185 4.185 13 C 0.115 3.885 14 C -0.143 4.143 15 C 0.176 3.824 16 H 0.049 0.951 17 N -0.743 5.743 18 C -0.211 4.211 19 H 0.062 0.938 20 C -0.059 4.059 21 N -0.984 5.984 22 Si 0.939 3.061 23 H -0.280 1.280 24 H -0.301 1.301 25 H -0.259 1.259 26 H 0.060 0.940 27 H 0.067 0.933 28 H 0.040 0.960 29 H 0.085 0.915 30 H 0.049 0.951 31 H 0.110 0.890 32 H 0.116 0.884 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.117 0.883 36 H 0.091 0.909 37 H 0.104 0.896 38 H 0.104 0.896 39 H 0.089 0.911 40 H 0.055 0.945 41 H 0.113 0.887 42 H 0.066 0.934 43 H 0.080 0.920 44 H 0.361 0.639 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.544 12.018 -12.774 22.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.121 4.121 3 H 0.108 0.892 4 C -0.005 4.005 5 N -0.338 5.338 6 C 0.299 3.701 7 O -0.470 6.470 8 C -0.169 4.169 9 C -0.105 4.105 10 C -0.175 4.175 11 C -0.216 4.216 12 C -0.222 4.222 13 C -0.007 4.007 14 C -0.183 4.183 15 C 0.068 3.932 16 H 0.067 0.933 17 N -0.387 5.387 18 C -0.343 4.343 19 H 0.080 0.920 20 C -0.251 4.251 21 N -0.636 5.636 22 Si 0.768 3.232 23 H -0.207 1.207 24 H -0.228 1.228 25 H -0.184 1.184 26 H 0.079 0.921 27 H 0.086 0.914 28 H 0.060 0.940 29 H 0.103 0.897 30 H 0.067 0.933 31 H 0.129 0.871 32 H 0.134 0.866 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.135 0.865 36 H 0.109 0.891 37 H 0.123 0.877 38 H 0.122 0.878 39 H 0.107 0.893 40 H 0.073 0.927 41 H 0.131 0.869 42 H 0.085 0.915 43 H 0.098 0.902 44 H 0.196 0.804 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 13.276 12.238 -13.065 22.288 hybrid contribution -0.782 -1.137 -0.429 1.445 sum 12.494 11.101 -13.494 21.481 Atomic orbital electron populations 1.21657 0.94043 1.01590 1.02120 1.21583 0.96649 0.99737 0.94086 0.89246 1.21428 0.80080 1.00036 0.98954 1.48252 1.06580 1.60125 1.18865 1.21377 0.91007 0.76245 0.81437 1.90641 1.76722 1.47102 1.32553 1.21723 0.88662 1.04997 1.01531 1.20819 0.92444 1.00892 0.96344 1.22333 0.92505 0.99799 1.02875 1.23109 1.02643 0.94476 1.01366 1.23033 1.02454 1.04284 0.92437 1.21758 0.99008 0.96909 0.83036 1.22370 0.97643 1.00718 0.97617 1.20423 0.92753 0.83954 0.96063 0.93337 1.42813 1.80755 1.10849 1.04242 1.19006 1.34595 0.93770 0.86891 0.91968 1.25291 1.03037 0.97760 0.98992 1.69858 1.55841 1.11061 1.26812 0.85657 0.77679 0.78594 0.81298 1.20669 1.22809 1.18370 0.92087 0.91417 0.94034 0.89700 0.93290 0.87143 0.86557 0.92413 0.92551 0.86487 0.89081 0.87732 0.87807 0.89287 0.92671 0.86932 0.91543 0.90156 0.80444 0.93622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.91 9.06 71.98 0.65 -3.25 16 2 C -0.10 -2.91 2.65 -10.86 -0.03 -2.94 16 3 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 4 C 0.12 3.57 5.40 86.22 0.47 4.04 16 5 N -0.61 -16.82 2.98 -819.73 -2.44 -19.26 16 6 C 0.51 13.85 7.70 87.66 0.67 14.52 16 7 O -0.59 -20.20 15.40 -3.04 -0.05 -20.25 16 8 C -0.13 -2.40 4.00 29.85 0.12 -2.28 16 9 C -0.07 -1.28 4.78 30.59 0.15 -1.13 16 10 C -0.16 -2.31 5.74 -10.79 -0.06 -2.38 16 11 C -0.18 -2.40 10.18 30.60 0.31 -2.09 16 12 C -0.19 -2.58 10.25 30.60 0.31 -2.26 16 13 C 0.11 3.01 6.09 86.37 0.53 3.53 16 14 C -0.14 -4.06 5.78 30.68 0.18 -3.88 16 15 C 0.18 5.98 2.53 45.02 0.11 6.09 16 16 H 0.05 1.76 8.08 -2.39 -0.02 1.74 16 17 N -0.74 -31.64 3.44 -322.83 -1.11 -32.76 16 18 C -0.21 -11.24 10.41 84.03 0.87 -10.36 16 19 H 0.06 3.62 8.06 -2.91 -0.02 3.60 16 20 C -0.06 -3.38 5.50 84.86 0.47 -2.92 16 21 N -0.98 -61.53 13.97 21.65 0.30 -61.23 16 22 Si 0.94 44.73 27.74 68.60 1.90 46.64 16 23 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 24 H -0.30 -14.78 7.11 99.48 0.71 -14.07 16 25 H -0.26 -11.32 6.52 99.48 0.65 -10.67 16 26 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 28 H 0.04 1.38 7.54 -2.38 -0.02 1.36 16 29 H 0.08 2.61 7.01 -2.39 -0.02 2.60 16 30 H 0.05 1.63 6.64 -2.39 -0.02 1.62 16 31 H 0.11 1.71 7.94 -2.39 -0.02 1.69 16 32 H 0.12 1.68 7.69 -2.39 -0.02 1.66 16 33 H 0.06 1.23 7.83 -2.39 -0.02 1.22 16 34 H 0.06 1.25 8.10 -2.39 -0.02 1.23 16 35 H 0.12 1.46 8.07 -2.39 -0.02 1.44 16 36 H 0.09 1.27 8.03 -2.39 -0.02 1.25 16 37 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.05 1.74 7.74 -2.39 -0.02 1.72 16 41 H 0.11 2.11 5.93 -2.39 -0.01 2.09 16 42 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 43 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 44 H 0.36 15.40 3.80 -92.71 -0.35 15.05 16 45 H 0.25 15.35 8.31 -92.70 -0.77 14.58 16 Total: -1.00 -67.17 350.23 3.90 -63.27 By element: Atomic # 1 Polarization: 28.35 SS G_CDS: 0.54 Total: 28.90 kcal Atomic # 6 Polarization: -10.06 SS G_CDS: 4.75 Total: -5.31 kcal Atomic # 7 Polarization: -110.00 SS G_CDS: -3.25 Total: -113.25 kcal Atomic # 8 Polarization: -20.20 SS G_CDS: -0.05 Total: -20.25 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 1.90 Total: 46.64 kcal Total: -67.17 3.90 -63.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035970745.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.298 kcal (2) G-P(sol) polarization free energy of solvation -67.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds