Wall clock time and date at job start Tue Mar 31 2020 02:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50698 * 119.99775 * 2 1 4 4 C 1.52997 * 109.47452 * 5.09075 * 3 2 1 5 5 C 1.52999 * 109.47032 * 245.08665 * 3 2 1 6 6 C 1.50706 * 109.46909 * 125.08934 * 3 2 1 7 7 O 1.21281 * 119.99997 * 244.83645 * 6 3 2 8 8 N 1.34779 * 119.99758 * 64.83297 * 6 3 2 9 9 C 1.46917 * 120.63166 * 354.77801 * 8 6 3 10 10 C 1.53194 * 108.77831 * 233.58347 * 9 8 6 11 11 C 1.53039 * 109.30817 * 305.36680 * 10 9 8 12 12 H 1.09008 * 109.45756 * 181.38258 * 11 10 9 13 13 N 1.46499 * 109.46483 * 301.34114 * 11 10 9 14 14 C 1.36943 * 120.00049 * 275.00642 * 13 11 10 15 15 H 1.08003 * 119.99710 * 359.97438 * 14 13 11 16 16 C 1.38803 * 119.99979 * 179.97438 * 14 13 11 17 17 N 1.31615 * 120.00469 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 119.99954 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.46696 * 90.00036 * 18 16 14 20 20 H 1.48500 * 109.47180 * 209.99500 * 18 16 14 21 21 H 1.48499 * 109.47318 * 330.00167 * 18 16 14 22 22 C 1.53041 * 109.54052 * 61.36355 * 11 10 9 23 23 H 1.09006 * 109.49691 * 58.58411 * 22 11 10 24 24 C 1.53004 * 109.49735 * 178.64680 * 22 11 10 25 25 C 1.46923 * 120.62775 * 174.49443 * 8 6 3 26 26 H 1.08003 * 119.99909 * 0.02562 * 1 2 3 27 27 H 1.07998 * 119.99687 * 179.97438 * 1 2 3 28 28 H 1.07994 * 119.99721 * 179.97438 * 2 1 3 29 29 H 1.08998 * 109.47526 * 184.92731 * 4 3 2 30 30 H 1.09001 * 109.47277 * 304.92696 * 4 3 2 31 31 H 1.09001 * 109.47374 * 64.92373 * 4 3 2 32 32 H 1.08999 * 109.47141 * 294.93602 * 5 3 2 33 33 H 1.08996 * 109.47005 * 54.93858 * 5 3 2 34 34 H 1.09003 * 109.47155 * 174.93455 * 5 3 2 35 35 H 1.08997 * 109.58926 * 353.37340 * 9 8 6 36 36 H 1.09005 * 109.59082 * 113.79858 * 9 8 6 37 37 H 1.09000 * 109.49446 * 65.31301 * 10 9 8 38 38 H 1.08995 * 109.50248 * 185.41890 * 10 9 8 39 39 H 0.96994 * 120.00111 * 94.99780 * 13 11 10 40 40 H 0.97004 * 120.00708 * 179.97438 * 17 16 14 41 41 H 1.08999 * 109.47217 * 60.00282 * 24 22 11 42 42 H 1.09002 * 109.46473 * 179.97438 * 24 22 11 43 43 H 1.08994 * 109.47279 * 300.00024 * 24 22 11 44 44 H 1.08997 * 109.59118 * 246.20620 * 25 8 6 45 45 H 1.09004 * 109.58920 * 6.62973 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 1.0742 2.4652 0.1280 5 6 2.8447 1.4430 -1.3083 6 6 3.0220 1.3318 1.1627 7 8 2.8705 2.1388 2.0552 8 7 4.0476 0.4586 1.2106 9 6 4.1793 -0.5978 0.1981 10 6 4.2990 -1.9497 0.9087 11 6 5.4531 -1.8935 1.9122 12 1 5.5561 -2.8620 2.4017 13 7 6.6962 -1.5677 1.2088 14 6 7.4303 -2.5622 0.6195 15 1 7.0930 -3.5868 0.6736 16 6 8.6078 -2.2535 -0.0474 17 7 9.0186 -1.0048 -0.1138 18 14 9.6096 -3.6102 -0.8507 19 1 9.1562 -3.7964 -2.2525 20 1 11.0467 -3.2365 -0.8409 21 1 9.4221 -4.8762 -0.0975 22 6 5.1655 -0.8190 2.9634 23 1 4.2279 -1.0476 3.4703 24 6 6.3037 -0.7867 3.9853 25 6 5.0587 0.5491 2.2728 26 1 -0.5400 0.9353 -0.0004 27 1 -0.5399 -0.9353 -0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.6095 3.4106 0.0402 30 1 0.3280 2.3954 -0.6634 31 1 0.5802 2.4161 1.0984 32 1 3.6106 0.6690 -1.3574 33 1 2.1631 1.3337 -2.1517 34 1 3.3170 2.4246 -1.3477 35 1 3.2991 -0.5996 -0.4447 36 1 5.0719 -0.4201 -0.4017 37 1 3.3696 -2.1676 1.4349 38 1 4.4935 -2.7310 0.1741 39 1 6.9992 -0.6476 1.1604 40 1 9.8417 -0.7891 -0.5796 41 1 7.2408 -0.5569 3.4782 42 1 6.0986 -0.0209 4.7334 43 1 6.3828 -1.7587 4.4720 44 1 6.0215 0.8186 1.8389 45 1 4.7588 1.3043 2.9993 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036141595.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:23:46 Heat of formation + Delta-G solvation = 3.863976 kcal Electronic energy + Delta-G solvation = -23794.845785 eV Core-core repulsion = 20620.490703 eV Total energy + Delta-G solvation = -3174.355082 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.59145 -37.98100 -36.33697 -34.23641 -32.77739 -31.39206 -30.84242 -29.18463 -27.59359 -26.20074 -25.25255 -23.64459 -23.16070 -21.65300 -20.21897 -18.91829 -18.09301 -17.32538 -16.61139 -15.99151 -15.32264 -14.85597 -14.58938 -14.38569 -14.10761 -13.73121 -13.55869 -13.26604 -12.99146 -12.59064 -12.46419 -12.40110 -12.19396 -11.88296 -11.70101 -11.49904 -11.35170 -11.23527 -11.12191 -10.92589 -10.76380 -10.74567 -10.46907 -10.20040 -10.19479 -9.83653 -9.78551 -9.55127 -9.12542 -8.92883 -8.16382 -6.98667 -5.80457 -3.08813 2.10835 2.92699 3.35684 3.40037 3.46233 3.47524 4.54633 4.56229 4.66144 4.91861 5.05818 5.14092 5.29613 5.33974 5.38158 5.51053 5.56469 5.60749 5.62143 5.73177 5.76057 5.79198 5.83341 5.93456 5.97602 6.08567 6.09641 6.15358 6.21009 6.26675 6.32791 6.42102 6.47848 6.53927 6.62914 6.66197 6.69825 6.78065 6.94207 7.03004 7.67147 7.78210 8.38140 8.45366 9.49807 10.06812 10.42038 11.41974 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.021285 B = 0.005210 C = 0.004800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.141505 B = 5372.557668 C = 5832.279183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.152 4.152 3 C -0.054 4.054 4 C -0.128 4.128 5 C -0.155 4.155 6 C 0.527 3.473 7 O -0.553 6.553 8 N -0.597 5.597 9 C 0.095 3.905 10 C -0.152 4.152 11 C 0.179 3.821 12 H 0.050 0.950 13 N -0.718 5.718 14 C -0.237 4.237 15 H 0.069 0.931 16 C -0.011 4.011 17 N -0.933 5.933 18 Si 0.904 3.096 19 H -0.291 1.291 20 H -0.293 1.293 21 H -0.283 1.283 22 C -0.107 4.107 23 H 0.065 0.935 24 C -0.137 4.137 25 C 0.118 3.882 26 H 0.104 0.896 27 H 0.099 0.901 28 H 0.124 0.876 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.081 0.919 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.090 0.910 36 H 0.084 0.916 37 H 0.048 0.952 38 H 0.074 0.926 39 H 0.384 0.616 40 H 0.255 0.745 41 H 0.070 0.930 42 H 0.043 0.957 43 H 0.052 0.948 44 H 0.075 0.925 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.672 2.548 0.171 14.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.170 4.170 3 C -0.057 4.057 4 C -0.185 4.185 5 C -0.212 4.212 6 C 0.314 3.686 7 O -0.431 6.431 8 N -0.328 5.328 9 C -0.026 4.026 10 C -0.193 4.193 11 C 0.069 3.931 12 H 0.068 0.932 13 N -0.361 5.361 14 C -0.368 4.368 15 H 0.087 0.913 16 C -0.207 4.207 17 N -0.581 5.581 18 Si 0.735 3.265 19 H -0.218 1.218 20 H -0.219 1.219 21 H -0.209 1.209 22 C -0.127 4.127 23 H 0.083 0.917 24 C -0.195 4.195 25 C -0.004 4.004 26 H 0.123 0.877 27 H 0.118 0.882 28 H 0.142 0.858 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.100 0.900 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.108 0.892 36 H 0.102 0.898 37 H 0.066 0.934 38 H 0.092 0.908 39 H 0.219 0.781 40 H 0.065 0.935 41 H 0.089 0.911 42 H 0.062 0.938 43 H 0.071 0.929 44 H 0.093 0.907 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -14.633 2.819 0.587 14.914 hybrid contribution 0.797 -0.631 -0.600 1.180 sum -13.837 2.188 -0.013 14.009 Atomic orbital electron populations 1.24042 0.95928 1.02258 1.00190 1.23054 0.96100 0.97191 1.00683 1.19848 0.95357 0.95522 0.94951 1.21729 0.98042 0.96618 1.02131 1.22199 1.00593 1.03714 0.94652 1.20330 0.81045 0.80377 0.86837 1.90635 1.73720 1.39512 1.39283 1.48040 1.25298 1.30631 1.28810 1.22268 1.02965 0.86863 0.90550 1.22556 0.99475 0.96480 1.00778 1.20202 0.86840 0.95614 0.90486 0.93218 1.42474 1.21997 1.07884 1.63696 1.19218 1.02002 0.89166 1.26433 0.91289 1.24691 0.98388 0.96106 1.01538 1.69645 1.24251 1.16317 1.47882 0.86247 0.79696 0.81214 0.79347 1.21842 1.21894 1.20864 1.21768 0.98681 0.95611 0.96674 0.91696 1.21667 0.99267 1.00841 0.97733 1.21738 0.91241 0.97731 0.89736 0.87742 0.88244 0.85835 0.92007 0.91919 0.91629 0.90040 0.91538 0.91843 0.89202 0.89787 0.93370 0.90779 0.78098 0.93532 0.91068 0.93814 0.92870 0.90698 0.89912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.86 13.74 29.01 0.40 -1.46 16 2 C -0.15 -1.76 7.81 -36.03 -0.28 -2.04 16 3 C -0.05 -0.69 0.73 -156.81 -0.11 -0.80 16 4 C -0.13 -1.50 6.58 37.16 0.24 -1.25 16 5 C -0.15 -1.82 8.11 37.16 0.30 -1.52 16 6 C 0.53 8.64 6.47 -10.98 -0.07 8.57 16 7 O -0.55 -10.70 15.31 5.56 0.09 -10.61 16 8 N -0.60 -9.75 2.96 -172.51 -0.51 -10.26 16 9 C 0.10 1.49 3.74 -3.71 -0.01 1.47 16 10 C -0.15 -2.46 5.68 -26.61 -0.15 -2.61 16 11 C 0.18 3.32 2.53 -67.89 -0.17 3.15 16 12 H 0.05 0.96 8.08 -51.92 -0.42 0.54 16 13 N -0.72 -16.32 3.64 -53.38 -0.19 -16.51 16 14 C -0.24 -6.11 9.93 -15.06 -0.15 -6.26 16 15 H 0.07 1.75 7.83 -52.48 -0.41 1.34 16 16 C -0.01 -0.30 5.50 -17.44 -0.10 -0.40 16 17 N -0.93 -26.87 13.06 55.49 0.72 -26.14 16 18 Si 0.90 21.59 29.55 -169.99 -5.02 16.56 16 19 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 20 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 C -0.11 -1.79 2.68 -90.27 -0.24 -2.03 16 23 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 24 C -0.14 -2.24 9.05 37.16 0.34 -1.90 16 25 C 0.12 2.04 5.45 -3.49 -0.02 2.02 16 26 H 0.10 0.95 5.67 -52.48 -0.30 0.65 16 27 H 0.10 0.84 8.06 -52.49 -0.42 0.42 16 28 H 0.12 1.43 5.69 -52.49 -0.30 1.13 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.06 0.59 6.93 -51.93 -0.36 0.23 16 31 H 0.06 0.83 7.73 -51.93 -0.40 0.42 16 32 H 0.08 1.03 4.57 -51.93 -0.24 0.79 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.09 1.19 2.74 -51.93 -0.14 1.04 16 36 H 0.08 1.54 7.57 -51.93 -0.39 1.15 16 37 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 39 H 0.38 9.39 5.92 -40.82 -0.24 9.15 16 40 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 41 H 0.07 1.34 7.54 -51.93 -0.39 0.95 16 42 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 44 H 0.07 1.42 6.63 -51.93 -0.34 1.08 16 45 H 0.08 1.46 7.00 -51.93 -0.36 1.09 16 LS Contribution 339.25 15.07 5.11 5.11 Total: -1.00 -29.27 339.25 -7.08 -36.35 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: -7.24 Total: 10.58 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: -0.03 Total: -5.08 kcal Atomic # 7 Polarization: -52.93 SS G_CDS: 0.02 Total: -52.91 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: 0.09 Total: -10.61 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.27 -7.08 -36.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036141595.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.213 kcal (2) G-P(sol) polarization free energy of solvation -29.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds