Wall clock time and date at job start Tue Mar 31 2020 02:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50698 * 119.99775 * 2 1 4 4 C 1.52997 * 109.47452 * 5.09075 * 3 2 1 5 5 C 1.52999 * 109.47032 * 245.08665 * 3 2 1 6 6 C 1.50706 * 109.46909 * 125.08934 * 3 2 1 7 7 O 1.21281 * 119.99997 * 244.83645 * 6 3 2 8 8 N 1.34779 * 119.99758 * 64.83297 * 6 3 2 9 9 C 1.46917 * 120.63166 * 354.77801 * 8 6 3 10 10 C 1.53194 * 108.77831 * 233.58347 * 9 8 6 11 11 C 1.53039 * 109.30817 * 305.36680 * 10 9 8 12 12 H 1.09008 * 109.45756 * 181.38258 * 11 10 9 13 13 N 1.46499 * 109.46483 * 301.34114 * 11 10 9 14 14 C 1.36943 * 120.00049 * 275.00642 * 13 11 10 15 15 H 1.08003 * 119.99710 * 359.97438 * 14 13 11 16 16 C 1.38803 * 119.99979 * 179.97438 * 14 13 11 17 17 N 1.31615 * 120.00469 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 119.99954 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.46696 * 90.00036 * 18 16 14 20 20 H 1.48500 * 109.47180 * 209.99500 * 18 16 14 21 21 H 1.48499 * 109.47318 * 330.00167 * 18 16 14 22 22 C 1.53041 * 109.54052 * 61.36355 * 11 10 9 23 23 H 1.09006 * 109.49691 * 58.58411 * 22 11 10 24 24 C 1.53004 * 109.49735 * 178.64680 * 22 11 10 25 25 C 1.46923 * 120.62775 * 174.49443 * 8 6 3 26 26 H 1.08003 * 119.99909 * 0.02562 * 1 2 3 27 27 H 1.07998 * 119.99687 * 179.97438 * 1 2 3 28 28 H 1.07994 * 119.99721 * 179.97438 * 2 1 3 29 29 H 1.08998 * 109.47526 * 184.92731 * 4 3 2 30 30 H 1.09001 * 109.47277 * 304.92696 * 4 3 2 31 31 H 1.09001 * 109.47374 * 64.92373 * 4 3 2 32 32 H 1.08999 * 109.47141 * 294.93602 * 5 3 2 33 33 H 1.08996 * 109.47005 * 54.93858 * 5 3 2 34 34 H 1.09003 * 109.47155 * 174.93455 * 5 3 2 35 35 H 1.08997 * 109.58926 * 353.37340 * 9 8 6 36 36 H 1.09005 * 109.59082 * 113.79858 * 9 8 6 37 37 H 1.09000 * 109.49446 * 65.31301 * 10 9 8 38 38 H 1.08995 * 109.50248 * 185.41890 * 10 9 8 39 39 H 0.96994 * 120.00111 * 94.99780 * 13 11 10 40 40 H 0.97004 * 120.00708 * 179.97438 * 17 16 14 41 41 H 1.08999 * 109.47217 * 60.00282 * 24 22 11 42 42 H 1.09002 * 109.46473 * 179.97438 * 24 22 11 43 43 H 1.08994 * 109.47279 * 300.00024 * 24 22 11 44 44 H 1.08997 * 109.59118 * 246.20620 * 25 8 6 45 45 H 1.09004 * 109.58920 * 6.62973 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 1.0742 2.4652 0.1280 5 6 2.8447 1.4430 -1.3083 6 6 3.0220 1.3318 1.1627 7 8 2.8705 2.1388 2.0552 8 7 4.0476 0.4586 1.2106 9 6 4.1793 -0.5978 0.1981 10 6 4.2990 -1.9497 0.9087 11 6 5.4531 -1.8935 1.9122 12 1 5.5561 -2.8620 2.4017 13 7 6.6962 -1.5677 1.2088 14 6 7.4303 -2.5622 0.6195 15 1 7.0930 -3.5868 0.6736 16 6 8.6078 -2.2535 -0.0474 17 7 9.0186 -1.0048 -0.1138 18 14 9.6096 -3.6102 -0.8507 19 1 9.1562 -3.7964 -2.2525 20 1 11.0467 -3.2365 -0.8409 21 1 9.4221 -4.8762 -0.0975 22 6 5.1655 -0.8190 2.9634 23 1 4.2279 -1.0476 3.4703 24 6 6.3037 -0.7867 3.9853 25 6 5.0587 0.5491 2.2728 26 1 -0.5400 0.9353 -0.0004 27 1 -0.5399 -0.9353 -0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.6095 3.4106 0.0402 30 1 0.3280 2.3954 -0.6634 31 1 0.5802 2.4161 1.0984 32 1 3.6106 0.6690 -1.3574 33 1 2.1631 1.3337 -2.1517 34 1 3.3170 2.4246 -1.3477 35 1 3.2991 -0.5996 -0.4447 36 1 5.0719 -0.4201 -0.4017 37 1 3.3696 -2.1676 1.4349 38 1 4.4935 -2.7310 0.1741 39 1 6.9992 -0.6476 1.1604 40 1 9.8417 -0.7891 -0.5796 41 1 7.2408 -0.5569 3.4782 42 1 6.0986 -0.0209 4.7334 43 1 6.3828 -1.7587 4.4720 44 1 6.0215 0.8186 1.8389 45 1 4.7588 1.3043 2.9993 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036141595.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:23:46 Heat of formation + Delta-G solvation = -12.734975 kcal Electronic energy + Delta-G solvation = -23795.565570 eV Core-core repulsion = 20620.490703 eV Total energy + Delta-G solvation = -3175.074867 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.85227 -39.37136 -37.47147 -35.83953 -34.38401 -32.97108 -31.73347 -30.91267 -28.64320 -27.44059 -26.75227 -25.39543 -24.30412 -23.06584 -21.34040 -20.19436 -19.40864 -19.23259 -17.71898 -17.24664 -16.68372 -16.38796 -16.02062 -15.68604 -15.63728 -15.12860 -14.82678 -14.73837 -14.28940 -14.17754 -13.69798 -13.44833 -13.20445 -13.07980 -12.95526 -12.85639 -12.82441 -12.70604 -12.49196 -12.39183 -12.19512 -12.10144 -12.00038 -11.89112 -11.57563 -11.32029 -11.16411 -10.95952 -10.72863 -10.17193 -9.56571 -8.90894 -7.87446 -5.13639 1.24685 1.50468 1.51240 1.58880 1.68258 2.08585 2.60880 3.44648 3.47360 3.72307 3.82964 3.88658 3.96191 4.05366 4.10210 4.13636 4.29764 4.34576 4.43551 4.56160 4.63815 4.68778 4.72078 4.79671 4.83317 4.85843 4.92425 4.95364 5.03850 5.06418 5.13158 5.22073 5.23088 5.28150 5.31012 5.35931 5.47947 5.61147 5.65505 5.70483 5.81723 6.34244 6.48424 7.15033 7.41922 8.18025 8.41925 9.35944 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.021285 B = 0.005210 C = 0.004800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.141505 B = 5372.557668 C = 5832.279183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.176 4.176 3 C -0.049 4.049 4 C -0.125 4.125 5 C -0.153 4.153 6 C 0.520 3.480 7 O -0.587 6.587 8 N -0.597 5.597 9 C 0.105 3.895 10 C -0.144 4.144 11 C 0.173 3.827 12 H 0.047 0.953 13 N -0.724 5.724 14 C -0.225 4.225 15 H 0.075 0.925 16 C -0.072 4.072 17 N -0.970 5.970 18 Si 0.963 3.037 19 H -0.290 1.290 20 H -0.303 1.303 21 H -0.272 1.272 22 C -0.097 4.097 23 H 0.083 0.917 24 C -0.131 4.131 25 C 0.121 3.879 26 H 0.114 0.886 27 H 0.118 0.882 28 H 0.124 0.876 29 H 0.051 0.949 30 H 0.091 0.909 31 H 0.055 0.945 32 H 0.069 0.931 33 H 0.091 0.909 34 H 0.055 0.945 35 H 0.120 0.880 36 H 0.052 0.948 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.373 0.627 40 H 0.247 0.753 41 H 0.040 0.960 42 H 0.062 0.938 43 H 0.059 0.941 44 H 0.050 0.950 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.261 1.366 -0.159 17.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.194 4.194 3 C -0.052 4.052 4 C -0.182 4.182 5 C -0.210 4.210 6 C 0.310 3.690 7 O -0.468 6.468 8 N -0.327 5.327 9 C -0.017 4.017 10 C -0.185 4.185 11 C 0.064 3.936 12 H 0.065 0.935 13 N -0.365 5.365 14 C -0.358 4.358 15 H 0.093 0.907 16 C -0.264 4.264 17 N -0.621 5.621 18 Si 0.794 3.206 19 H -0.217 1.217 20 H -0.231 1.231 21 H -0.197 1.197 22 C -0.117 4.117 23 H 0.101 0.899 24 C -0.189 4.189 25 C -0.001 4.001 26 H 0.132 0.868 27 H 0.136 0.864 28 H 0.141 0.859 29 H 0.070 0.930 30 H 0.110 0.890 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.110 0.890 34 H 0.074 0.926 35 H 0.138 0.862 36 H 0.070 0.930 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.206 0.794 40 H 0.056 0.944 41 H 0.059 0.941 42 H 0.081 0.919 43 H 0.078 0.922 44 H 0.068 0.932 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -17.266 1.597 0.266 17.342 hybrid contribution 1.493 -0.244 -0.428 1.573 sum -15.773 1.352 -0.162 15.832 Atomic orbital electron populations 1.24290 0.95294 1.03648 0.96949 1.22942 0.96716 0.96151 1.03629 1.19864 0.94860 0.97097 0.93378 1.21735 0.98211 0.95650 1.02642 1.22194 1.00741 1.02856 0.95178 1.21103 0.81154 0.79325 0.87441 1.90612 1.74617 1.40633 1.40889 1.48090 1.25095 1.30981 1.28557 1.22222 1.02897 0.86281 0.90298 1.22438 0.99363 0.96584 1.00118 1.20426 0.86010 0.95966 0.91207 0.93493 1.42578 1.23280 1.06788 1.63825 1.19569 1.01598 0.89935 1.24655 0.90665 1.25365 0.99952 0.97799 1.03303 1.69803 1.24540 1.18145 1.49636 0.85288 0.77570 0.79276 0.78505 1.21704 1.23062 1.19703 1.21686 0.99468 0.94409 0.96128 0.89904 1.21600 0.97628 1.01858 0.97833 1.21577 0.90531 0.98067 0.89975 0.86817 0.86364 0.85892 0.92991 0.88993 0.92618 0.91192 0.88970 0.92614 0.86215 0.92992 0.90733 0.91211 0.79357 0.94411 0.94128 0.91885 0.92155 0.93172 0.90258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.61 13.74 67.77 0.93 -1.67 16 2 C -0.18 -3.53 7.81 25.64 0.20 -3.33 16 3 C -0.05 -1.17 0.73 -53.67 -0.04 -1.21 16 4 C -0.13 -2.67 6.58 71.98 0.47 -2.20 16 5 C -0.15 -3.36 8.11 71.98 0.58 -2.78 16 6 C 0.52 16.73 6.47 87.66 0.57 17.30 16 7 O -0.59 -22.63 15.31 -3.03 -0.05 -22.68 16 8 N -0.60 -19.32 2.96 -818.08 -2.42 -21.74 16 9 C 0.10 3.19 3.74 86.37 0.32 3.51 16 10 C -0.14 -4.45 5.68 30.67 0.17 -4.28 16 11 C 0.17 6.27 2.53 45.02 0.11 6.39 16 12 H 0.05 1.75 8.08 -2.38 -0.02 1.73 16 13 N -0.72 -33.33 3.64 -322.81 -1.18 -34.51 16 14 C -0.23 -11.66 9.93 84.03 0.83 -10.82 16 15 H 0.08 3.74 7.83 -2.91 -0.02 3.72 16 16 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16 17 N -0.97 -57.54 13.06 21.65 0.28 -57.26 16 18 Si 0.96 44.83 29.55 68.60 2.03 46.86 16 19 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 20 H -0.30 -14.55 7.11 99.48 0.71 -13.85 16 21 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 22 C -0.10 -3.16 2.68 -10.57 -0.03 -3.19 16 23 H 0.08 2.46 8.14 -2.38 -0.02 2.44 16 24 C -0.13 -4.24 9.05 71.98 0.65 -3.59 16 25 C 0.12 4.26 5.45 86.51 0.47 4.73 16 26 H 0.11 1.59 5.67 -2.91 -0.02 1.57 16 27 H 0.12 1.45 8.06 -2.91 -0.02 1.43 16 28 H 0.12 2.45 5.69 -2.91 -0.02 2.43 16 29 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.09 1.40 6.93 -2.39 -0.02 1.38 16 31 H 0.05 1.30 7.73 -2.39 -0.02 1.28 16 32 H 0.07 1.70 4.57 -2.39 -0.01 1.69 16 33 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.12 2.96 2.74 -2.39 -0.01 2.95 16 36 H 0.05 1.95 7.57 -2.38 -0.02 1.93 16 37 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 39 H 0.37 18.93 5.92 -92.71 -0.55 18.38 16 40 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 41 H 0.04 1.56 7.54 -2.39 -0.02 1.54 16 42 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 44 H 0.05 2.01 6.63 -2.39 -0.02 1.99 16 45 H 0.08 2.83 7.00 -2.39 -0.02 2.81 16 Total: -1.00 -63.88 339.25 4.82 -59.06 By element: Atomic # 1 Polarization: 34.48 SS G_CDS: 0.43 Total: 34.91 kcal Atomic # 6 Polarization: -10.36 SS G_CDS: 5.72 Total: -4.63 kcal Atomic # 7 Polarization: -110.20 SS G_CDS: -3.31 Total: -113.51 kcal Atomic # 8 Polarization: -22.63 SS G_CDS: -0.05 Total: -22.68 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -63.88 4.82 -59.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036141595.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.320 kcal (2) G-P(sol) polarization free energy of solvation -63.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds