Wall clock time and date at job start Tue Mar 31 2020 02:22:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.49646 * 2 1 4 4 C 1.53191 * 109.49451 * 239.94278 * 2 1 3 5 5 N 1.46927 * 108.77869 * 185.41278 * 4 2 1 6 6 C 1.34774 * 120.63558 * 233.58941 * 5 4 2 7 7 O 1.21281 * 119.99435 * 355.39583 * 6 5 4 8 8 C 1.50693 * 120.00537 * 175.39336 * 6 5 4 9 9 C 1.53003 * 112.84828 * 67.80833 * 8 6 5 10 10 C 1.53779 * 113.61652 * 296.61505 * 8 6 5 11 11 C 1.53951 * 87.02201 * 220.04383 * 10 8 6 12 12 C 1.53780 * 113.61856 * 199.00525 * 8 6 5 13 13 C 1.46923 * 118.73660 * 53.60229 * 5 4 2 14 14 C 1.53196 * 108.78017 * 306.39941 * 13 5 4 15 15 C 1.53038 * 109.49932 * 120.10595 * 2 1 3 16 16 H 1.09000 * 109.45927 * 301.32998 * 15 2 1 17 17 N 1.46497 * 109.46139 * 61.29103 * 15 2 1 18 18 C 1.36936 * 119.99736 * 204.99730 * 17 15 2 19 19 H 1.07999 * 120.00221 * 0.02562 * 18 17 15 20 20 C 1.38818 * 119.99567 * 180.02562 * 18 17 15 21 21 N 1.31617 * 120.00091 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99548 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47323 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.46963 * 120.00413 * 22 20 18 25 25 H 1.48502 * 109.46936 * 239.99551 * 22 20 18 26 26 H 1.08998 * 109.47117 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47656 * 60.05848 * 1 2 3 28 28 H 1.09001 * 109.46630 * 300.05868 * 1 2 3 29 29 H 1.08999 * 109.58639 * 305.19912 * 4 2 1 30 30 H 1.09002 * 109.58950 * 65.62620 * 4 2 1 31 31 H 1.09003 * 109.47031 * 66.20507 * 9 8 6 32 32 H 1.08996 * 109.47635 * 186.20902 * 9 8 6 33 33 H 1.09001 * 109.47243 * 306.21269 * 9 8 6 34 34 H 1.09000 * 113.61562 * 334.56934 * 10 8 6 35 35 H 1.09006 * 113.61235 * 105.46458 * 10 8 6 36 36 H 1.09004 * 113.54050 * 270.81060 * 11 10 8 37 37 H 1.08992 * 113.74547 * 139.94016 * 11 10 8 38 38 H 1.08996 * 113.61356 * 254.53370 * 12 8 6 39 39 H 1.08997 * 113.61170 * 25.34936 * 12 8 6 40 40 H 1.09001 * 109.58789 * 66.18398 * 13 5 4 41 41 H 1.09004 * 109.59240 * 186.46223 * 13 5 4 42 42 H 1.08997 * 109.49600 * 174.58642 * 14 13 5 43 43 H 1.09006 * 109.48998 * 294.65049 * 14 13 5 44 44 H 0.96998 * 120.00114 * 25.00634 * 17 15 2 45 45 H 0.97003 * 119.99834 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0412 -0.7233 -1.2499 5 7 3.5046 -0.8287 -1.1701 6 6 4.2811 -0.3856 -2.1786 7 8 3.7722 0.0288 -3.1985 8 6 5.7814 -0.4050 -2.0390 9 6 6.3561 -1.8224 -2.0000 10 6 6.3074 0.5041 -0.9158 11 6 7.4522 0.8870 -1.8712 12 6 6.5042 0.5258 -3.0269 13 6 4.1053 -1.4267 0.0300 14 6 3.5709 -0.6955 1.2656 15 6 2.0409 -0.7236 1.2480 16 1 1.6583 -0.2253 2.1388 17 7 1.5783 -2.1135 1.2299 18 6 1.4483 -2.8071 2.4035 19 1 1.6863 -2.3293 3.3424 20 6 1.0105 -4.1243 2.3863 21 7 0.7209 -4.7067 1.2421 22 14 0.8324 -5.0702 3.9873 23 1 1.2173 -4.1960 5.1242 24 1 -0.5785 -5.5033 4.1520 25 1 1.7161 -6.2633 3.9582 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5129 -0.8905 28 1 -0.3632 0.5148 0.8895 29 1 1.6052 -1.7211 -1.2987 30 1 1.7637 -0.1571 -2.1390 31 1 6.1975 -2.3055 -2.9641 32 1 7.4243 -1.7757 -1.7883 33 1 5.8559 -2.3960 -1.2197 34 1 5.6416 1.3336 -0.6775 35 1 6.6389 -0.0411 -0.0320 36 1 8.3194 0.2308 -1.7965 37 1 7.7170 1.9437 -1.8377 38 1 6.9942 -0.0018 -3.8451 39 1 5.8918 1.3604 -3.3682 40 1 3.8375 -2.4818 0.0857 41 1 5.1898 -1.3269 -0.0157 42 1 3.9335 -1.1906 2.1664 43 1 3.9165 0.3382 1.2543 44 1 1.3643 -2.5426 0.3867 45 1 0.4147 -5.6270 1.2301 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036148458.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:22:47 Heat of formation + Delta-G solvation = -26.338058 kcal Electronic energy + Delta-G solvation = -23788.772775 eV Core-core repulsion = 20613.108034 eV Total energy + Delta-G solvation = -3175.664740 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.96586 -39.80599 -38.38013 -35.86155 -34.46371 -32.98280 -30.91464 -30.66459 -27.79626 -26.86855 -26.50805 -25.51104 -24.72702 -23.04089 -21.46287 -20.01869 -19.25438 -19.16905 -17.88369 -17.21673 -16.67458 -16.29307 -15.97137 -15.84895 -15.55723 -15.18310 -14.85924 -14.53592 -14.39270 -14.28031 -13.62094 -13.46723 -13.29750 -13.15564 -12.97102 -12.88529 -12.86239 -12.60057 -12.44788 -12.24460 -12.08976 -12.03634 -11.90918 -11.87591 -11.57640 -11.38227 -11.18238 -11.11023 -10.86831 -10.44197 -9.57071 -8.91303 -7.87992 -5.14159 1.49319 1.50866 1.59419 1.62160 2.06057 2.60521 3.41337 3.46697 3.51174 3.69298 3.82886 3.90002 3.91456 4.01849 4.06600 4.11053 4.31654 4.40271 4.52143 4.61484 4.64471 4.66272 4.72518 4.75934 4.84788 4.87350 4.91209 4.95500 5.04940 5.08064 5.09413 5.13035 5.16867 5.25184 5.30392 5.31031 5.34332 5.47835 5.54695 5.61477 5.67406 6.33871 6.51013 7.17890 7.41275 8.17772 8.41164 9.35738 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.022297 B = 0.005096 C = 0.004674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.485842 B = 5493.483100 C = 5988.852596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.097 4.097 3 H 0.085 0.915 4 C 0.122 3.878 5 N -0.597 5.597 6 C 0.520 3.480 7 O -0.593 6.593 8 C -0.112 4.112 9 C -0.131 4.131 10 C -0.122 4.122 11 C -0.123 4.123 12 C -0.116 4.116 13 C 0.117 3.883 14 C -0.141 4.141 15 C 0.172 3.828 16 H 0.048 0.952 17 N -0.725 5.725 18 C -0.224 4.224 19 H 0.077 0.923 20 C -0.074 4.074 21 N -0.971 5.971 22 Si 0.963 3.037 23 H -0.265 1.265 24 H -0.301 1.301 25 H -0.298 1.298 26 H 0.038 0.962 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.046 0.954 30 H 0.077 0.923 31 H 0.054 0.946 32 H 0.098 0.902 33 H 0.062 0.938 34 H 0.077 0.923 35 H 0.092 0.908 36 H 0.103 0.897 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.069 0.931 40 H 0.047 0.953 41 H 0.111 0.889 42 H 0.068 0.932 43 H 0.077 0.923 44 H 0.372 0.628 45 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.504 11.804 -3.328 18.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.116 4.116 3 H 0.103 0.897 4 C -0.001 4.001 5 N -0.328 5.328 6 C 0.310 3.690 7 O -0.474 6.474 8 C -0.115 4.115 9 C -0.188 4.188 10 C -0.159 4.159 11 C -0.160 4.160 12 C -0.154 4.154 13 C -0.005 4.005 14 C -0.182 4.182 15 C 0.063 3.937 16 H 0.066 0.934 17 N -0.366 5.366 18 C -0.356 4.356 19 H 0.095 0.905 20 C -0.266 4.266 21 N -0.623 5.623 22 Si 0.794 3.206 23 H -0.190 1.190 24 H -0.229 1.229 25 H -0.226 1.226 26 H 0.057 0.943 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.064 0.936 30 H 0.095 0.905 31 H 0.073 0.927 32 H 0.117 0.883 33 H 0.081 0.919 34 H 0.095 0.905 35 H 0.111 0.889 36 H 0.121 0.879 37 H 0.100 0.900 38 H 0.095 0.905 39 H 0.088 0.912 40 H 0.065 0.935 41 H 0.129 0.871 42 H 0.087 0.913 43 H 0.096 0.904 44 H 0.206 0.794 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 13.231 11.989 -3.644 18.223 hybrid contribution -0.992 -1.299 0.353 1.672 sum 12.239 10.690 -3.291 16.580 Atomic orbital electron populations 1.21603 0.94185 1.01427 1.01733 1.21610 0.96494 0.99242 0.94292 0.89657 1.21467 0.80044 0.99904 0.98725 1.48145 1.06361 1.59440 1.18835 1.21202 0.90401 0.75599 0.81774 1.90607 1.76520 1.50062 1.30259 1.22242 0.88645 0.98691 1.01912 1.21750 1.02715 0.91866 1.02454 1.23072 0.98077 0.98221 0.96536 1.22835 0.96513 1.02799 0.93849 1.22834 0.97443 0.98077 0.97049 1.21876 0.98824 0.96514 0.83296 1.22401 0.98105 1.00334 0.97353 1.20449 0.92546 0.85116 0.95589 0.93382 1.42603 1.79088 1.09294 1.05590 1.19622 1.34454 0.93792 0.87700 0.90532 1.25384 1.03668 0.98462 0.99060 1.69819 1.54068 1.12835 1.25539 0.85211 0.76343 0.78623 0.80424 1.18982 1.22937 1.22588 0.94258 0.91915 0.92019 0.93595 0.90463 0.92690 0.88315 0.91908 0.90474 0.88910 0.87888 0.89990 0.90510 0.91221 0.93479 0.87122 0.91336 0.90437 0.79449 0.94449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.25 9.05 71.98 0.65 -3.60 16 2 C -0.10 -3.12 2.67 -10.72 -0.03 -3.15 16 3 H 0.09 2.45 8.14 -2.39 -0.02 2.44 16 4 C 0.12 4.31 5.41 86.36 0.47 4.78 16 5 N -0.60 -19.47 2.97 -818.91 -2.43 -21.90 16 6 C 0.52 16.82 6.68 87.66 0.59 17.41 16 7 O -0.59 -23.45 15.63 -3.03 -0.05 -23.49 16 8 C -0.11 -2.58 0.70 -52.40 -0.04 -2.62 16 9 C -0.13 -2.66 8.61 71.98 0.62 -2.04 16 10 C -0.12 -2.16 5.99 31.18 0.19 -1.97 16 11 C -0.12 -1.75 7.74 31.18 0.24 -1.51 16 12 C -0.12 -2.39 6.90 31.12 0.21 -2.17 16 13 C 0.12 3.57 4.71 86.36 0.41 3.97 16 14 C -0.14 -4.30 5.78 30.67 0.18 -4.12 16 15 C 0.17 6.20 2.53 45.02 0.11 6.32 16 16 H 0.05 1.77 8.08 -2.39 -0.02 1.75 16 17 N -0.72 -33.56 3.64 -322.82 -1.17 -34.73 16 18 C -0.22 -11.59 9.93 84.04 0.83 -10.75 16 19 H 0.08 3.81 7.83 -2.91 -0.02 3.79 16 20 C -0.07 -4.07 5.50 84.86 0.47 -3.60 16 21 N -0.97 -58.07 13.06 21.65 0.28 -57.78 16 22 Si 0.96 44.98 29.55 68.60 2.03 47.01 16 23 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 24 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 25 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 26 H 0.04 1.51 7.53 -2.39 -0.02 1.50 16 27 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.06 1.86 8.14 -2.39 -0.02 1.85 16 29 H 0.05 1.88 6.64 -2.39 -0.02 1.87 16 30 H 0.08 2.79 7.03 -2.39 -0.02 2.78 16 31 H 0.05 1.20 8.14 -2.39 -0.02 1.19 16 32 H 0.10 1.40 7.32 -2.39 -0.02 1.38 16 33 H 0.06 1.41 5.69 -2.39 -0.01 1.39 16 34 H 0.08 1.50 8.09 -2.39 -0.02 1.48 16 35 H 0.09 1.38 7.22 -2.38 -0.02 1.37 16 36 H 0.10 1.09 7.62 -2.39 -0.02 1.07 16 37 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.08 1.46 8.10 -2.39 -0.02 1.44 16 39 H 0.07 1.70 7.75 -2.39 -0.02 1.68 16 40 H 0.05 1.79 7.74 -2.39 -0.02 1.77 16 41 H 0.11 2.67 3.29 -2.39 -0.01 2.67 16 42 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 43 H 0.08 1.95 8.14 -2.38 -0.02 1.93 16 44 H 0.37 19.10 5.92 -92.71 -0.55 18.55 16 45 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 Total: -1.00 -65.32 339.51 3.97 -61.35 By element: Atomic # 1 Polarization: 32.19 SS G_CDS: 0.42 Total: 32.61 kcal Atomic # 6 Polarization: -7.96 SS G_CDS: 4.90 Total: -3.06 kcal Atomic # 7 Polarization: -111.09 SS G_CDS: -3.33 Total: -114.42 kcal Atomic # 8 Polarization: -23.45 SS G_CDS: -0.05 Total: -23.49 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -65.32 3.97 -61.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036148458.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.010 kcal (2) G-P(sol) polarization free energy of solvation -65.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds