Wall clock time and date at job start Tue Mar 31 2020 02:22:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.49603 * 2 1 4 4 C 1.53191 * 109.49513 * 239.93818 * 2 1 3 5 5 N 1.46926 * 108.77145 * 185.40956 * 4 2 1 6 6 C 1.34775 * 120.62865 * 233.62248 * 5 4 2 7 7 O 1.21283 * 120.00112 * 354.23772 * 6 5 4 8 8 C 1.50701 * 119.99854 * 174.22502 * 6 5 4 9 9 C 1.52992 * 112.85426 * 291.27683 * 8 6 5 10 10 C 1.53785 * 113.61194 * 159.96177 * 8 6 5 11 11 C 1.53782 * 87.07950 * 220.02314 * 10 8 6 12 12 C 1.53775 * 87.08439 * 25.43514 * 11 10 8 13 13 C 1.46924 * 118.73824 * 53.61004 * 5 4 2 14 14 C 1.53190 * 108.77513 * 306.38753 * 13 5 4 15 15 C 1.53035 * 109.49734 * 120.09761 * 2 1 3 16 16 H 1.09003 * 109.46342 * 61.31355 * 15 2 1 17 17 N 1.46501 * 109.46287 * 301.33461 * 15 2 1 18 18 C 1.36936 * 119.99785 * 154.99883 * 17 15 2 19 19 H 1.07994 * 120.00405 * 0.02562 * 18 17 15 20 20 C 1.38816 * 119.99715 * 180.02562 * 18 17 15 21 21 N 1.31616 * 119.99817 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99756 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47294 * 60.00102 * 22 20 18 24 24 H 1.48506 * 109.46834 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.47384 * 299.99829 * 22 20 18 26 26 H 1.09008 * 109.46857 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47189 * 300.06068 * 1 2 3 28 28 H 1.09001 * 109.47693 * 60.06505 * 1 2 3 29 29 H 1.09000 * 109.58660 * 65.62192 * 4 2 1 30 30 H 1.09003 * 109.70660 * 305.26822 * 4 2 1 31 31 H 1.08994 * 109.47661 * 65.38959 * 9 8 6 32 32 H 1.09002 * 109.47388 * 185.39124 * 9 8 6 33 33 H 1.09005 * 109.46977 * 305.38508 * 9 8 6 34 34 H 1.08999 * 113.61627 * 334.57575 * 10 8 6 35 35 H 1.09008 * 113.61033 * 105.47836 * 10 8 6 36 36 H 1.09001 * 113.61925 * 270.88561 * 11 10 8 37 37 H 1.09004 * 113.61083 * 139.98682 * 11 10 8 38 38 H 1.08994 * 113.61779 * 220.02057 * 12 11 10 39 39 H 1.09004 * 113.61610 * 89.11145 * 12 11 10 40 40 H 1.09000 * 109.58799 * 66.17846 * 13 5 4 41 41 H 1.09003 * 109.58422 * 186.59667 * 13 5 4 42 42 H 1.08998 * 109.49375 * 174.58473 * 14 13 5 43 43 H 1.08994 * 109.49957 * 294.68569 * 14 13 5 44 44 H 0.96996 * 120.00169 * 335.00808 * 17 15 2 45 45 H 0.97001 * 119.99770 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7234 -1.2498 5 7 3.5046 -0.8286 -1.1699 6 6 4.2811 -0.3849 -2.1782 7 8 3.7730 0.0103 -3.2061 8 6 5.7806 -0.3795 -2.0282 9 6 6.2717 0.6453 -1.0039 10 6 6.5334 -0.3238 -3.3680 11 6 7.5278 -1.3276 -2.7612 12 6 6.3855 -1.7804 -1.8366 13 6 4.1053 -1.4266 0.0303 14 6 3.5709 -0.6953 1.2657 15 6 2.0408 -0.7234 1.2481 16 1 1.6970 -1.7577 1.2346 17 7 1.5266 -0.0536 2.4453 18 6 1.3965 -0.7503 3.6170 19 1 1.6734 -1.7934 3.6587 20 6 0.9088 -0.1158 4.7512 21 7 0.5719 1.1555 4.7005 22 14 0.7320 -1.0660 6.3497 23 1 2.0605 -1.5801 6.7695 24 1 0.1942 -0.1674 7.4027 25 1 -0.1986 -2.2055 6.1480 26 1 -0.3633 -1.0278 0.0005 27 1 -0.3633 0.5148 0.8894 28 1 -0.3634 0.5128 -0.8905 29 1 1.7637 -0.1573 -2.1389 30 1 1.6054 -1.7212 -1.3012 31 1 5.9190 0.3649 -0.0115 32 1 7.3614 0.6703 -1.0086 33 1 5.8846 1.6311 -1.2620 34 1 5.9638 -0.7256 -4.2060 35 1 6.9725 0.6508 -3.5818 36 1 8.3565 -0.8563 -2.2327 37 1 7.8538 -2.0968 -3.4614 38 1 6.7050 -1.9819 -0.8142 39 1 5.7754 -2.5805 -2.2559 40 1 3.8376 -2.4817 0.0859 41 1 5.1896 -1.3245 -0.0143 42 1 3.9335 -1.1903 2.1666 43 1 3.9159 0.3386 1.2541 44 1 1.2782 0.8832 2.4079 45 1 0.2307 1.5988 5.4930 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036148461.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:22:57 Heat of formation + Delta-G solvation = -12.363289 kcal Electronic energy + Delta-G solvation = -23358.604890 eV Core-core repulsion = 20183.546141 eV Total energy + Delta-G solvation = -3175.058749 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.92135 -38.54554 -37.16813 -34.58981 -32.84742 -31.47298 -29.81618 -29.29523 -26.77386 -25.77096 -25.25326 -24.14430 -22.76379 -21.62997 -20.38914 -19.33559 -18.34553 -17.09746 -16.88553 -16.12354 -15.47859 -14.97794 -14.73758 -14.35124 -14.16447 -13.85670 -13.58946 -13.30756 -12.88623 -12.71379 -12.52217 -12.46404 -12.38045 -12.13143 -11.64892 -11.55953 -11.47548 -11.32198 -11.09205 -10.93136 -10.82669 -10.65350 -10.61806 -10.41945 -10.33010 -10.23639 -9.74859 -9.62238 -9.38130 -8.90248 -8.40850 -6.97541 -5.78683 -3.07333 2.73238 3.16600 3.41518 3.46428 3.47332 4.26348 4.33716 4.51030 4.56487 4.61916 4.79368 5.11269 5.24784 5.26640 5.30971 5.39786 5.43254 5.51504 5.53849 5.58438 5.62742 5.65299 5.69964 5.71103 5.81492 5.84811 5.89278 5.99584 6.08911 6.09862 6.16539 6.26924 6.31417 6.41114 6.44058 6.56193 6.66233 6.81788 6.93276 7.06067 7.60048 7.66833 8.31935 8.39620 9.50952 10.08660 10.43634 11.43777 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.025965 B = 0.004334 C = 0.003967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.125447 B = 6459.315388 C = 7057.004317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.109 4.109 3 H 0.068 0.932 4 C 0.119 3.881 5 N -0.602 5.602 6 C 0.529 3.471 7 O -0.551 6.551 8 C -0.106 4.106 9 C -0.129 4.129 10 C -0.112 4.112 11 C -0.141 4.141 12 C -0.128 4.128 13 C 0.100 3.900 14 C -0.152 4.152 15 C 0.184 3.816 16 H 0.047 0.953 17 N -0.721 5.721 18 C -0.239 4.239 19 H 0.069 0.931 20 C -0.012 4.012 21 N -0.932 5.932 22 Si 0.905 3.095 23 H -0.287 1.287 24 H -0.292 1.292 25 H -0.286 1.286 26 H 0.050 0.950 27 H 0.073 0.927 28 H 0.042 0.958 29 H 0.085 0.915 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.088 0.912 35 H 0.071 0.929 36 H 0.083 0.917 37 H 0.069 0.931 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.064 0.936 41 H 0.087 0.913 42 H 0.075 0.925 43 H 0.059 0.941 44 H 0.384 0.616 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.652 -4.876 -13.353 18.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.129 4.129 3 H 0.087 0.913 4 C -0.003 4.003 5 N -0.334 5.334 6 C 0.317 3.683 7 O -0.429 6.429 8 C -0.109 4.109 9 C -0.186 4.186 10 C -0.150 4.150 11 C -0.179 4.179 12 C -0.165 4.165 13 C -0.024 4.024 14 C -0.193 4.193 15 C 0.074 3.926 16 H 0.065 0.935 17 N -0.361 5.361 18 C -0.370 4.370 19 H 0.087 0.913 20 C -0.208 4.208 21 N -0.581 5.581 22 Si 0.736 3.264 23 H -0.213 1.213 24 H -0.218 1.218 25 H -0.213 1.213 26 H 0.069 0.931 27 H 0.092 0.908 28 H 0.061 0.939 29 H 0.104 0.896 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.106 0.894 35 H 0.090 0.910 36 H 0.101 0.899 37 H 0.088 0.912 38 H 0.097 0.903 39 H 0.102 0.898 40 H 0.082 0.918 41 H 0.105 0.895 42 H 0.093 0.907 43 H 0.078 0.922 44 H 0.218 0.782 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 11.339 -4.782 -13.727 18.435 hybrid contribution -0.230 -0.177 1.139 1.176 sum 11.108 -4.959 -12.587 17.505 Atomic orbital electron populations 1.21660 0.94170 1.01740 1.01794 1.21732 0.96527 0.99977 0.94670 0.91345 1.21691 0.78801 1.00684 0.99151 1.48115 1.06897 1.60204 1.18212 1.20411 0.88676 0.76469 0.82750 1.90645 1.75417 1.48394 1.28461 1.22078 0.91468 0.98215 0.99165 1.21651 1.01336 0.97795 0.97837 1.22822 0.96540 1.00043 0.95565 1.22846 0.96751 0.99228 0.99036 1.23087 0.97574 0.95128 1.00750 1.22094 0.98450 0.97095 0.84718 1.22697 1.00380 1.00375 0.95887 1.20184 0.90395 0.95638 0.86389 0.93506 1.42402 1.76524 1.11414 1.05743 1.19171 1.36010 0.94084 0.87742 0.91316 1.24718 1.02046 0.96001 0.98013 1.69647 1.49906 1.09500 1.29007 0.86306 0.77730 0.78731 0.83625 1.21338 1.21750 1.21311 0.93081 0.90768 0.93870 0.89618 0.91797 0.90968 0.91378 0.91816 0.89363 0.91002 0.89860 0.91189 0.90313 0.89758 0.91756 0.89531 0.90686 0.92189 0.78233 0.93474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 9.02 37.16 0.34 -1.91 16 2 C -0.11 -1.82 2.46 -90.50 -0.22 -2.04 16 3 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 4 C 0.12 1.80 5.70 -3.71 -0.02 1.78 16 5 N -0.60 -8.64 2.97 -172.77 -0.51 -9.16 16 6 C 0.53 7.84 6.67 -10.99 -0.07 7.77 16 7 O -0.55 -9.97 15.67 5.56 0.09 -9.88 16 8 C -0.11 -1.20 0.70 -154.85 -0.11 -1.30 16 9 C -0.13 -1.34 8.75 37.15 0.33 -1.01 16 10 C -0.11 -1.15 6.89 -25.92 -0.18 -1.33 16 11 C -0.14 -1.14 7.73 -25.92 -0.20 -1.34 16 12 C -0.13 -1.17 5.62 -25.92 -0.15 -1.32 16 13 C 0.10 1.30 5.28 -3.71 -0.02 1.28 16 14 C -0.15 -2.49 5.62 -26.61 -0.15 -2.64 16 15 C 0.18 3.46 2.19 -67.89 -0.15 3.31 16 16 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 17 N -0.72 -17.17 4.41 -53.38 -0.24 -17.41 16 18 C -0.24 -6.35 9.93 -15.06 -0.15 -6.50 16 19 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 20 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 21 N -0.93 -27.52 13.06 55.49 0.72 -26.80 16 22 Si 0.90 21.88 29.55 -169.99 -5.02 16.85 16 23 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 25 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 26 H 0.05 0.81 8.14 -51.92 -0.42 0.39 16 27 H 0.07 1.43 7.36 -51.93 -0.38 1.04 16 28 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.09 1.35 7.04 -51.93 -0.37 0.99 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.07 0.78 6.11 -51.93 -0.32 0.46 16 32 H 0.07 0.57 7.32 -51.93 -0.38 0.19 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.09 1.02 7.78 -51.93 -0.40 0.61 16 35 H 0.07 0.70 8.10 -51.92 -0.42 0.27 16 36 H 0.08 0.58 7.61 -51.93 -0.40 0.19 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.08 0.64 7.05 -51.93 -0.37 0.27 16 39 H 0.08 0.81 8.09 -51.93 -0.42 0.39 16 40 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.09 0.96 3.05 -51.93 -0.16 0.80 16 42 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 43 H 0.06 1.04 8.03 -51.93 -0.42 0.62 16 44 H 0.38 9.90 7.50 -40.82 -0.31 9.59 16 45 H 0.26 7.36 8.31 -40.82 -0.34 7.03 16 LS Contribution 343.46 15.07 5.18 5.18 Total: -1.00 -30.37 343.46 -8.32 -38.69 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: -7.68 Total: 8.20 kcal Atomic # 6 Polarization: -4.82 SS G_CDS: -0.85 Total: -5.68 kcal Atomic # 7 Polarization: -53.34 SS G_CDS: -0.02 Total: -53.36 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: 0.09 Total: -9.88 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.37 -8.32 -38.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036148461.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.327 kcal (2) G-P(sol) polarization free energy of solvation -30.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds