Wall clock time and date at job start Tue Mar 31 2020 02:22:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.49603 * 2 1 4 4 C 1.53191 * 109.49513 * 239.93818 * 2 1 3 5 5 N 1.46926 * 108.77145 * 185.40956 * 4 2 1 6 6 C 1.34775 * 120.62865 * 233.62248 * 5 4 2 7 7 O 1.21283 * 120.00112 * 354.23772 * 6 5 4 8 8 C 1.50701 * 119.99854 * 174.22502 * 6 5 4 9 9 C 1.52992 * 112.85426 * 291.27683 * 8 6 5 10 10 C 1.53785 * 113.61194 * 159.96177 * 8 6 5 11 11 C 1.53782 * 87.07950 * 220.02314 * 10 8 6 12 12 C 1.53775 * 87.08439 * 25.43514 * 11 10 8 13 13 C 1.46924 * 118.73824 * 53.61004 * 5 4 2 14 14 C 1.53190 * 108.77513 * 306.38753 * 13 5 4 15 15 C 1.53035 * 109.49734 * 120.09761 * 2 1 3 16 16 H 1.09003 * 109.46342 * 61.31355 * 15 2 1 17 17 N 1.46501 * 109.46287 * 301.33461 * 15 2 1 18 18 C 1.36936 * 119.99785 * 154.99883 * 17 15 2 19 19 H 1.07994 * 120.00405 * 0.02562 * 18 17 15 20 20 C 1.38816 * 119.99715 * 180.02562 * 18 17 15 21 21 N 1.31616 * 119.99817 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99756 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47294 * 60.00102 * 22 20 18 24 24 H 1.48506 * 109.46834 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.47384 * 299.99829 * 22 20 18 26 26 H 1.09008 * 109.46857 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47189 * 300.06068 * 1 2 3 28 28 H 1.09001 * 109.47693 * 60.06505 * 1 2 3 29 29 H 1.09000 * 109.58660 * 65.62192 * 4 2 1 30 30 H 1.09003 * 109.70660 * 305.26822 * 4 2 1 31 31 H 1.08994 * 109.47661 * 65.38959 * 9 8 6 32 32 H 1.09002 * 109.47388 * 185.39124 * 9 8 6 33 33 H 1.09005 * 109.46977 * 305.38508 * 9 8 6 34 34 H 1.08999 * 113.61627 * 334.57575 * 10 8 6 35 35 H 1.09008 * 113.61033 * 105.47836 * 10 8 6 36 36 H 1.09001 * 113.61925 * 270.88561 * 11 10 8 37 37 H 1.09004 * 113.61083 * 139.98682 * 11 10 8 38 38 H 1.08994 * 113.61779 * 220.02057 * 12 11 10 39 39 H 1.09004 * 113.61610 * 89.11145 * 12 11 10 40 40 H 1.09000 * 109.58799 * 66.17846 * 13 5 4 41 41 H 1.09003 * 109.58422 * 186.59667 * 13 5 4 42 42 H 1.08998 * 109.49375 * 174.58473 * 14 13 5 43 43 H 1.08994 * 109.49957 * 294.68569 * 14 13 5 44 44 H 0.96996 * 120.00169 * 335.00808 * 17 15 2 45 45 H 0.97001 * 119.99770 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7234 -1.2498 5 7 3.5046 -0.8286 -1.1699 6 6 4.2811 -0.3849 -2.1782 7 8 3.7730 0.0103 -3.2061 8 6 5.7806 -0.3795 -2.0282 9 6 6.2717 0.6453 -1.0039 10 6 6.5334 -0.3238 -3.3680 11 6 7.5278 -1.3276 -2.7612 12 6 6.3855 -1.7804 -1.8366 13 6 4.1053 -1.4266 0.0303 14 6 3.5709 -0.6953 1.2657 15 6 2.0408 -0.7234 1.2481 16 1 1.6970 -1.7577 1.2346 17 7 1.5266 -0.0536 2.4453 18 6 1.3965 -0.7503 3.6170 19 1 1.6734 -1.7934 3.6587 20 6 0.9088 -0.1158 4.7512 21 7 0.5719 1.1555 4.7005 22 14 0.7320 -1.0660 6.3497 23 1 2.0605 -1.5801 6.7695 24 1 0.1942 -0.1674 7.4027 25 1 -0.1986 -2.2055 6.1480 26 1 -0.3633 -1.0278 0.0005 27 1 -0.3633 0.5148 0.8894 28 1 -0.3634 0.5128 -0.8905 29 1 1.7637 -0.1573 -2.1389 30 1 1.6054 -1.7212 -1.3012 31 1 5.9190 0.3649 -0.0115 32 1 7.3614 0.6703 -1.0086 33 1 5.8846 1.6311 -1.2620 34 1 5.9638 -0.7256 -4.2060 35 1 6.9725 0.6508 -3.5818 36 1 8.3565 -0.8563 -2.2327 37 1 7.8538 -2.0968 -3.4614 38 1 6.7050 -1.9819 -0.8142 39 1 5.7754 -2.5805 -2.2559 40 1 3.8376 -2.4817 0.0859 41 1 5.1896 -1.3245 -0.0143 42 1 3.9335 -1.1903 2.1666 43 1 3.9159 0.3386 1.2541 44 1 1.2782 0.8832 2.4079 45 1 0.2307 1.5988 5.4930 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036148461.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:22:56 Heat of formation + Delta-G solvation = -30.094405 kcal Electronic energy + Delta-G solvation = -23359.373769 eV Core-core repulsion = 20183.546141 eV Total energy + Delta-G solvation = -3175.827628 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.96100 -39.70745 -38.38903 -36.17362 -34.43817 -33.06545 -31.03523 -30.62303 -27.93748 -26.88445 -26.50850 -25.35852 -24.18628 -23.05821 -21.58145 -20.58671 -19.36855 -19.00841 -17.92039 -17.28926 -16.75099 -16.41126 -15.83040 -15.69671 -15.54924 -15.29186 -14.95930 -14.77200 -14.12083 -13.94892 -13.75110 -13.47396 -13.26713 -13.21504 -13.09696 -12.86140 -12.79302 -12.70846 -12.51511 -12.25313 -12.18896 -12.09600 -11.98969 -11.84672 -11.66521 -11.38551 -11.16041 -11.13549 -10.85528 -10.46670 -9.64737 -8.95403 -7.89778 -5.17470 1.49761 1.51757 1.57592 1.58849 2.03758 2.59266 3.39370 3.44170 3.50153 3.67498 3.77782 3.83583 3.90762 3.98755 4.03855 4.10754 4.30635 4.38423 4.48701 4.59237 4.63149 4.70974 4.71927 4.77208 4.81190 4.82229 4.86140 4.90762 4.97487 5.02325 5.07635 5.09054 5.14880 5.22100 5.31449 5.33389 5.39513 5.51528 5.53249 5.57250 5.66698 6.31237 6.44824 7.15753 7.38023 8.13926 8.37517 9.33647 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.025965 B = 0.004334 C = 0.003967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.125447 B = 6459.315388 C = 7057.004317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.098 4.098 3 H 0.051 0.949 4 C 0.125 3.875 5 N -0.604 5.604 6 C 0.523 3.477 7 O -0.590 6.590 8 C -0.112 4.112 9 C -0.126 4.126 10 C -0.118 4.118 11 C -0.125 4.125 12 C -0.124 4.124 13 C 0.109 3.891 14 C -0.142 4.142 15 C 0.180 3.820 16 H 0.046 0.954 17 N -0.732 5.732 18 C -0.232 4.232 19 H 0.078 0.922 20 C -0.075 4.075 21 N -0.971 5.971 22 Si 0.968 3.032 23 H -0.277 1.277 24 H -0.301 1.301 25 H -0.280 1.280 26 H 0.058 0.942 27 H 0.041 0.959 28 H 0.062 0.938 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.067 0.933 32 H 0.094 0.906 33 H 0.047 0.953 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.101 0.899 37 H 0.081 0.919 38 H 0.096 0.904 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.113 0.887 42 H 0.068 0.932 43 H 0.047 0.953 44 H 0.370 0.630 45 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.693 -6.836 -13.752 20.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.119 4.119 3 H 0.070 0.930 4 C 0.002 3.998 5 N -0.335 5.335 6 C 0.313 3.687 7 O -0.470 6.470 8 C -0.115 4.115 9 C -0.183 4.183 10 C -0.156 4.156 11 C -0.163 4.163 12 C -0.162 4.162 13 C -0.014 4.014 14 C -0.183 4.183 15 C 0.071 3.929 16 H 0.064 0.936 17 N -0.371 5.371 18 C -0.364 4.364 19 H 0.096 0.904 20 C -0.267 4.267 21 N -0.622 5.622 22 Si 0.797 3.203 23 H -0.203 1.203 24 H -0.228 1.228 25 H -0.206 1.206 26 H 0.077 0.923 27 H 0.060 0.940 28 H 0.081 0.919 29 H 0.096 0.904 30 H 0.098 0.902 31 H 0.086 0.914 32 H 0.113 0.887 33 H 0.066 0.934 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.120 0.880 37 H 0.100 0.900 38 H 0.114 0.886 39 H 0.099 0.901 40 H 0.100 0.900 41 H 0.131 0.869 42 H 0.087 0.913 43 H 0.066 0.934 44 H 0.202 0.798 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 13.414 -6.793 -14.149 20.646 hybrid contribution -0.882 0.442 1.163 1.525 sum 12.532 -6.351 -12.986 19.132 Atomic orbital electron populations 1.21577 0.94056 1.01983 1.01145 1.21591 0.96596 0.98991 0.94677 0.93047 1.21560 0.79681 1.01044 0.97505 1.48204 1.06572 1.60093 1.18603 1.21148 0.90274 0.75286 0.82034 1.90623 1.76452 1.49952 1.30010 1.22234 0.88733 1.00224 1.00285 1.21653 1.02976 0.96616 0.97083 1.22846 0.97108 1.01024 0.94609 1.22818 0.96323 0.98526 0.98594 1.23115 0.97596 0.93335 1.02112 1.22125 0.99751 0.97187 0.82303 1.22484 0.98141 1.00167 0.97488 1.20412 0.91953 0.95175 0.85348 0.93551 1.42579 1.76948 1.10845 1.06685 1.19564 1.33896 0.94441 0.88486 0.90444 1.25474 1.03095 0.96872 1.01250 1.69815 1.51948 1.11157 1.29321 0.85294 0.77932 0.77334 0.79698 1.20314 1.22754 1.20594 0.92331 0.93989 0.91897 0.90370 0.90247 0.91370 0.88688 0.93385 0.91126 0.90705 0.88049 0.90049 0.88551 0.90099 0.90001 0.86919 0.91333 0.93429 0.79831 0.94293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.29 9.02 71.98 0.65 -3.64 16 2 C -0.10 -3.28 2.46 -10.72 -0.03 -3.31 16 3 H 0.05 1.88 8.14 -2.39 -0.02 1.87 16 4 C 0.13 3.64 5.70 86.36 0.49 4.13 16 5 N -0.60 -16.43 2.97 -818.90 -2.43 -18.86 16 6 C 0.52 14.93 6.67 87.66 0.58 15.52 16 7 O -0.59 -21.29 15.67 -3.04 -0.05 -21.34 16 8 C -0.11 -2.28 0.70 -52.40 -0.04 -2.32 16 9 C -0.13 -2.33 8.75 71.98 0.63 -1.70 16 10 C -0.12 -2.20 6.89 31.12 0.21 -1.99 16 11 C -0.13 -1.56 7.73 31.12 0.24 -1.32 16 12 C -0.12 -1.84 5.62 31.12 0.18 -1.66 16 13 C 0.11 2.56 5.28 86.36 0.46 3.01 16 14 C -0.14 -4.48 5.62 30.67 0.17 -4.30 16 15 C 0.18 6.66 2.19 45.02 0.10 6.76 16 16 H 0.05 1.74 8.08 -2.39 -0.02 1.72 16 17 N -0.73 -35.31 4.41 -322.81 -1.42 -36.73 16 18 C -0.23 -12.31 9.93 84.03 0.83 -11.48 16 19 H 0.08 3.90 7.83 -2.91 -0.02 3.88 16 20 C -0.07 -4.19 5.50 84.86 0.47 -3.72 16 21 N -0.97 -58.73 13.06 21.65 0.28 -58.44 16 22 Si 0.97 45.12 29.55 68.60 2.03 47.15 16 23 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 24 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 25 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 26 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 27 H 0.04 1.66 7.36 -2.39 -0.02 1.64 16 28 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.08 2.44 7.04 -2.39 -0.02 2.42 16 30 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.07 1.31 6.11 -2.39 -0.01 1.29 16 32 H 0.09 1.25 7.32 -2.39 -0.02 1.23 16 33 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16 34 H 0.07 1.57 7.78 -2.39 -0.02 1.55 16 35 H 0.07 1.32 8.10 -2.38 -0.02 1.31 16 36 H 0.10 0.94 7.61 -2.39 -0.02 0.93 16 37 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 38 H 0.10 1.11 7.05 -2.39 -0.02 1.10 16 39 H 0.08 1.29 8.09 -2.39 -0.02 1.27 16 40 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.11 2.11 3.05 -2.39 -0.01 2.10 16 42 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 43 H 0.05 1.62 8.03 -2.39 -0.02 1.60 16 44 H 0.37 19.74 7.50 -92.71 -0.70 19.04 16 45 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 Total: -1.00 -66.71 343.46 3.63 -63.08 By element: Atomic # 1 Polarization: 30.90 SS G_CDS: 0.27 Total: 31.17 kcal Atomic # 6 Polarization: -10.98 SS G_CDS: 4.95 Total: -6.03 kcal Atomic # 7 Polarization: -110.46 SS G_CDS: -3.58 Total: -114.04 kcal Atomic # 8 Polarization: -21.29 SS G_CDS: -0.05 Total: -21.34 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -66.71 3.63 -63.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036148461.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.985 kcal (2) G-P(sol) polarization free energy of solvation -66.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds