Wall clock time and date at job start Tue Mar 31 2020 01:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.58612 * 2 1 4 4 C 1.53186 * 109.58807 * 239.57071 * 2 1 3 5 5 C 1.53040 * 109.31469 * 185.57413 * 4 2 1 6 6 H 1.09000 * 109.45327 * 181.37677 * 5 4 2 7 7 N 1.46494 * 109.46260 * 301.34785 * 5 4 2 8 8 C 1.36941 * 120.00264 * 205.06686 * 7 5 4 9 9 H 1.08000 * 119.99429 * 0.02562 * 8 7 5 10 10 C 1.38807 * 120.00157 * 179.97438 * 8 7 5 11 11 N 1.31626 * 120.00094 * 179.97438 * 10 8 7 12 12 Si 1.86804 * 120.00180 * 0.02562 * 10 8 7 13 13 H 1.48495 * 109.47237 * 89.99462 * 12 10 8 14 14 H 1.48500 * 109.47068 * 209.99586 * 12 10 8 15 15 H 1.48508 * 109.46732 * 329.99635 * 12 10 8 16 16 C 1.53042 * 109.53558 * 61.36572 * 5 4 2 17 17 C 1.53188 * 109.31242 * 298.63395 * 16 5 4 18 18 N 1.46922 * 109.58763 * 120.28052 * 2 1 3 19 19 C 1.34779 * 120.63273 * 353.37501 * 18 2 1 20 20 O 1.21278 * 120.00041 * 354.76759 * 19 18 2 21 21 C 1.50699 * 120.00114 * 174.76624 * 19 18 2 22 22 C 1.53000 * 109.47134 * 185.33739 * 21 19 18 23 23 C 1.52998 * 115.54940 * 279.59875 * 22 21 19 24 24 C 1.53000 * 117.50019 * 133.89284 * 22 21 19 25 25 C 1.53000 * 117.49764 * 65.26873 * 22 21 19 26 26 H 1.09001 * 109.47141 * 307.02881 * 1 2 3 27 27 H 1.09000 * 109.47401 * 67.03592 * 1 2 3 28 28 H 1.09003 * 109.46916 * 187.03525 * 1 2 3 29 29 H 1.09005 * 109.49685 * 65.62575 * 4 2 1 30 30 H 1.08995 * 109.49971 * 305.52923 * 4 2 1 31 31 H 0.97000 * 120.00144 * 24.78985 * 7 5 4 32 32 H 0.96991 * 119.99991 * 180.02562 * 11 10 8 33 33 H 1.09003 * 109.49962 * 58.58883 * 16 5 4 34 34 H 1.09005 * 109.49741 * 178.64895 * 16 5 4 35 35 H 1.08998 * 109.58752 * 174.42332 * 17 16 5 36 36 H 1.08996 * 109.58770 * 294.84497 * 17 16 5 37 37 H 1.08993 * 109.47081 * 305.33895 * 21 19 18 38 38 H 1.09005 * 109.47099 * 65.33413 * 21 19 18 39 39 H 1.09000 * 109.47425 * 58.43883 * 23 22 21 40 40 H 1.08994 * 109.47341 * 178.43717 * 23 22 21 41 41 H 1.08999 * 109.47558 * 298.43501 * 23 22 21 42 42 H 1.09000 * 117.49698 * 359.97438 * 24 22 21 43 43 H 1.08996 * 117.49763 * 145.02254 * 24 22 21 44 44 H 1.08997 * 117.49349 * 214.98215 * 25 22 21 45 45 H 1.08994 * 117.49729 * 359.97438 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0435 -0.7309 -1.2444 5 6 3.5675 -0.8494 -1.1690 6 1 3.9376 -1.3475 -2.0651 7 7 4.1570 0.4885 -1.0755 8 6 5.4409 0.7023 -1.5012 9 1 6.0187 -0.1154 -1.9061 10 6 5.9993 1.9700 -1.4131 11 7 7.2335 2.1754 -1.8217 12 14 4.9996 3.3844 -0.7132 13 1 5.2100 3.4606 0.7548 14 1 5.4349 4.6571 -1.3424 15 1 3.5591 3.1598 -0.9958 16 6 3.9569 -1.6655 0.0657 17 6 3.4651 -0.9451 1.3249 18 7 2.0225 -0.6980 1.1953 19 6 1.1674 -1.1034 2.1550 20 8 -0.0073 -0.8106 2.0837 21 6 1.6711 -1.9205 3.3168 22 6 0.4883 -2.3589 4.1827 23 6 -0.0422 -1.3056 5.1574 24 6 0.4437 -3.8216 4.6295 25 6 -0.5266 -3.3188 3.5586 26 1 -0.3633 0.6189 0.8204 27 1 -0.3634 0.4009 -0.9462 28 1 -0.3633 -1.0200 0.1259 29 1 1.7660 -0.1695 -2.1366 30 1 1.6030 -1.7269 -1.2891 31 1 3.6365 1.2238 -0.7159 32 1 7.6238 3.0612 -1.7598 33 1 3.4984 -2.6528 0.0087 34 1 5.0412 -1.7698 0.1057 35 1 3.6519 -1.5687 2.1992 36 1 3.9903 0.0039 1.4317 37 1 2.1934 -2.8009 2.9424 38 1 2.3557 -1.3188 3.9146 39 1 -0.3518 -0.4201 4.6023 40 1 -0.8958 -1.7106 5.7008 41 1 0.7431 -1.0357 5.8635 42 1 1.2567 -4.4716 4.3062 43 1 0.0364 -4.0336 5.6180 44 1 -1.5722 -3.2000 3.8427 45 1 -0.3519 -3.6376 2.5311 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044690981.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:59:32 Heat of formation + Delta-G solvation = 9.916588 kcal Electronic energy + Delta-G solvation = -23459.910448 eV Core-core repulsion = 20285.817827 eV Total energy + Delta-G solvation = -3174.092621 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.50918 -38.40567 -37.02459 -34.28814 -32.87956 -31.94824 -29.85152 -29.34829 -28.10976 -26.97226 -24.23448 -23.12799 -22.52248 -22.14222 -20.28608 -19.00769 -18.12831 -17.77008 -16.53880 -16.04273 -15.47863 -15.29520 -14.69182 -14.36989 -14.05877 -13.72085 -13.62871 -13.49703 -13.29447 -12.80735 -12.60837 -12.42042 -12.30750 -12.15161 -11.86238 -11.70513 -11.58225 -11.33392 -11.19797 -11.05187 -10.91519 -10.75306 -10.49210 -10.30772 -10.25544 -10.03609 -9.83036 -9.61366 -8.99477 -8.77856 -8.23300 -7.32046 -5.81703 -3.17362 2.83400 3.12922 3.32741 3.36036 3.41990 3.74293 4.52333 4.54239 4.63847 4.71762 4.89138 4.95434 5.14236 5.16766 5.26035 5.35044 5.40487 5.47836 5.49841 5.53329 5.56426 5.61761 5.73876 5.74926 5.80466 5.86220 5.88395 5.94510 6.00246 6.04778 6.07141 6.16604 6.20979 6.32723 6.39480 6.50807 6.61155 6.63585 6.70351 6.97702 7.70442 7.94712 8.37538 8.43487 9.15706 9.88435 10.08169 11.36670 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.024944 B = 0.004648 C = 0.004640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.252033 B = 6022.330512 C = 6033.556155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.144 3.856 3 H 0.068 0.932 4 C -0.136 4.136 5 C 0.179 3.821 6 H 0.059 0.941 7 N -0.746 5.746 8 C -0.243 4.243 9 H 0.091 0.909 10 C 0.007 3.993 11 N -0.933 5.933 12 Si 0.878 3.122 13 H -0.284 1.284 14 H -0.290 1.290 15 H -0.278 1.278 16 C -0.149 4.149 17 C 0.112 3.888 18 N -0.605 5.605 19 C 0.513 3.487 20 O -0.534 6.534 21 C -0.107 4.107 22 C -0.107 4.107 23 C -0.111 4.111 24 C -0.181 4.181 25 C -0.155 4.155 26 H 0.072 0.928 27 H 0.039 0.961 28 H 0.063 0.937 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.360 0.640 32 H 0.259 0.741 33 H 0.052 0.948 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.090 0.910 38 H 0.095 0.905 39 H 0.067 0.933 40 H 0.053 0.947 41 H 0.054 0.946 42 H 0.092 0.908 43 H 0.092 0.908 44 H 0.091 0.909 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.245 -10.492 11.040 20.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.042 3.958 3 H 0.086 0.914 4 C -0.175 4.175 5 C 0.070 3.930 6 H 0.077 0.923 7 N -0.390 5.390 8 C -0.373 4.373 9 H 0.109 0.891 10 C -0.189 4.189 11 N -0.581 5.581 12 Si 0.709 3.291 13 H -0.211 1.211 14 H -0.217 1.217 15 H -0.204 1.204 16 C -0.190 4.190 17 C -0.010 4.010 18 N -0.338 5.338 19 C 0.302 3.698 20 O -0.412 6.412 21 C -0.147 4.147 22 C -0.107 4.107 23 C -0.169 4.169 24 C -0.218 4.218 25 C -0.192 4.192 26 H 0.091 0.909 27 H 0.058 0.942 28 H 0.082 0.918 29 H 0.093 0.907 30 H 0.083 0.917 31 H 0.194 0.806 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.097 0.903 35 H 0.092 0.908 36 H 0.097 0.903 37 H 0.109 0.891 38 H 0.113 0.887 39 H 0.086 0.914 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.110 0.890 43 H 0.111 0.889 44 H 0.110 0.890 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -13.621 -10.340 10.887 20.272 hybrid contribution -0.278 1.105 0.406 1.210 sum -13.899 -9.235 11.293 20.149 Atomic orbital electron populations 1.22167 0.93017 1.03356 1.00434 1.21202 0.95057 0.95471 0.84117 0.91382 1.22278 0.97358 1.00582 0.97293 1.20154 0.90182 0.87131 0.95565 0.92298 1.42878 1.14150 1.05142 1.76861 1.19073 0.88027 0.95935 1.34247 0.89139 1.24640 0.96031 0.97040 1.01158 1.69691 1.13469 1.22042 1.52873 0.86650 0.79867 0.83476 0.79116 1.21099 1.21660 1.20411 1.22479 1.01861 0.97947 0.96676 1.21733 0.79272 1.01513 0.98515 1.48255 1.07797 1.57571 1.20211 1.20506 0.86116 0.79989 0.83222 1.90705 1.17008 1.56737 1.76767 1.21290 0.97685 1.00534 0.95161 1.21025 0.98260 0.91094 1.00323 1.21280 1.00009 0.98248 0.97315 1.23162 1.02853 0.96106 0.99678 1.22850 0.95933 1.02741 0.97720 0.90898 0.94175 0.91759 0.90738 0.91681 0.80599 0.93041 0.92978 0.90321 0.90823 0.90331 0.89142 0.88677 0.91422 0.92786 0.92655 0.88960 0.88918 0.89018 0.89212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.99 7.61 37.16 0.28 -1.70 16 2 C 0.14 2.29 3.19 -67.61 -0.22 2.07 16 3 H 0.07 1.21 6.65 -51.93 -0.35 0.86 16 4 C -0.14 -2.12 5.07 -26.61 -0.13 -2.25 16 5 C 0.18 3.21 3.10 -67.89 -0.21 3.00 16 6 H 0.06 1.10 8.08 -51.93 -0.42 0.68 16 7 N -0.75 -16.52 4.11 -53.39 -0.22 -16.74 16 8 C -0.24 -6.50 10.41 -15.06 -0.16 -6.66 16 9 H 0.09 2.60 8.06 -52.49 -0.42 2.17 16 10 C 0.01 0.20 5.50 -17.43 -0.10 0.11 16 11 N -0.93 -28.59 13.97 55.49 0.78 -27.81 16 12 Si 0.88 21.69 27.74 -169.99 -4.72 16.97 16 13 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 14 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 15 H -0.28 -6.52 6.51 56.52 0.37 -6.15 16 16 C -0.15 -2.30 5.78 -26.61 -0.15 -2.46 16 17 C 0.11 1.63 6.10 -3.71 -0.02 1.61 16 18 N -0.60 -8.97 2.97 -165.23 -0.49 -9.47 16 19 C 0.51 7.28 7.36 -10.98 -0.08 7.19 16 20 O -0.53 -8.57 10.51 5.56 0.06 -8.51 16 21 C -0.11 -1.18 3.99 -27.88 -0.11 -1.29 16 22 C -0.11 -1.13 1.59 -154.51 -0.25 -1.38 16 23 C -0.11 -1.15 9.65 37.16 0.36 -0.79 16 24 C -0.18 -1.62 9.89 -26.73 -0.26 -1.89 16 25 C -0.16 -1.65 9.17 -26.73 -0.25 -1.89 16 26 H 0.07 1.18 6.67 -51.93 -0.35 0.83 16 27 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.99 6.83 -51.93 -0.35 0.64 16 29 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 30 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.36 8.03 3.93 -40.82 -0.16 7.87 16 32 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 33 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 35 H 0.07 0.86 5.92 -51.93 -0.31 0.55 16 36 H 0.08 1.34 7.74 -51.93 -0.40 0.94 16 37 H 0.09 0.90 7.46 -51.93 -0.39 0.51 16 38 H 0.09 0.97 7.95 -51.93 -0.41 0.55 16 39 H 0.07 0.82 7.59 -51.93 -0.39 0.43 16 40 H 0.05 0.50 8.11 -51.93 -0.42 0.08 16 41 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.09 0.76 8.08 -51.93 -0.42 0.34 16 43 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 45 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 343.08 15.07 5.17 5.17 Total: -1.00 -30.05 343.08 -8.48 -38.53 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: -7.77 Total: 8.17 kcal Atomic # 6 Polarization: -5.03 SS G_CDS: -1.30 Total: -6.33 kcal Atomic # 7 Polarization: -54.08 SS G_CDS: 0.06 Total: -54.01 kcal Atomic # 8 Polarization: -8.57 SS G_CDS: 0.06 Total: -8.51 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.72 Total: 16.97 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.05 -8.48 -38.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044690981.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.450 kcal (2) G-P(sol) polarization free energy of solvation -30.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds