Wall clock time and date at job start Tue Mar 31 2020 01:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.58612 * 2 1 4 4 C 1.53186 * 109.58807 * 239.57071 * 2 1 3 5 5 C 1.53040 * 109.31469 * 185.57413 * 4 2 1 6 6 H 1.09000 * 109.45327 * 181.37677 * 5 4 2 7 7 N 1.46494 * 109.46260 * 301.34785 * 5 4 2 8 8 C 1.36941 * 120.00264 * 205.06686 * 7 5 4 9 9 H 1.08000 * 119.99429 * 0.02562 * 8 7 5 10 10 C 1.38807 * 120.00157 * 179.97438 * 8 7 5 11 11 N 1.31626 * 120.00094 * 179.97438 * 10 8 7 12 12 Si 1.86804 * 120.00180 * 0.02562 * 10 8 7 13 13 H 1.48495 * 109.47237 * 89.99462 * 12 10 8 14 14 H 1.48500 * 109.47068 * 209.99586 * 12 10 8 15 15 H 1.48508 * 109.46732 * 329.99635 * 12 10 8 16 16 C 1.53042 * 109.53558 * 61.36572 * 5 4 2 17 17 C 1.53188 * 109.31242 * 298.63395 * 16 5 4 18 18 N 1.46922 * 109.58763 * 120.28052 * 2 1 3 19 19 C 1.34779 * 120.63273 * 353.37501 * 18 2 1 20 20 O 1.21278 * 120.00041 * 354.76759 * 19 18 2 21 21 C 1.50699 * 120.00114 * 174.76624 * 19 18 2 22 22 C 1.53000 * 109.47134 * 185.33739 * 21 19 18 23 23 C 1.52998 * 115.54940 * 279.59875 * 22 21 19 24 24 C 1.53000 * 117.50019 * 133.89284 * 22 21 19 25 25 C 1.53000 * 117.49764 * 65.26873 * 22 21 19 26 26 H 1.09001 * 109.47141 * 307.02881 * 1 2 3 27 27 H 1.09000 * 109.47401 * 67.03592 * 1 2 3 28 28 H 1.09003 * 109.46916 * 187.03525 * 1 2 3 29 29 H 1.09005 * 109.49685 * 65.62575 * 4 2 1 30 30 H 1.08995 * 109.49971 * 305.52923 * 4 2 1 31 31 H 0.97000 * 120.00144 * 24.78985 * 7 5 4 32 32 H 0.96991 * 119.99991 * 180.02562 * 11 10 8 33 33 H 1.09003 * 109.49962 * 58.58883 * 16 5 4 34 34 H 1.09005 * 109.49741 * 178.64895 * 16 5 4 35 35 H 1.08998 * 109.58752 * 174.42332 * 17 16 5 36 36 H 1.08996 * 109.58770 * 294.84497 * 17 16 5 37 37 H 1.08993 * 109.47081 * 305.33895 * 21 19 18 38 38 H 1.09005 * 109.47099 * 65.33413 * 21 19 18 39 39 H 1.09000 * 109.47425 * 58.43883 * 23 22 21 40 40 H 1.08994 * 109.47341 * 178.43717 * 23 22 21 41 41 H 1.08999 * 109.47558 * 298.43501 * 23 22 21 42 42 H 1.09000 * 117.49698 * 359.97438 * 24 22 21 43 43 H 1.08996 * 117.49763 * 145.02254 * 24 22 21 44 44 H 1.08997 * 117.49349 * 214.98215 * 25 22 21 45 45 H 1.08994 * 117.49729 * 359.97438 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0435 -0.7309 -1.2444 5 6 3.5675 -0.8494 -1.1690 6 1 3.9376 -1.3475 -2.0651 7 7 4.1570 0.4885 -1.0755 8 6 5.4409 0.7023 -1.5012 9 1 6.0187 -0.1154 -1.9061 10 6 5.9993 1.9700 -1.4131 11 7 7.2335 2.1754 -1.8217 12 14 4.9996 3.3844 -0.7132 13 1 5.2100 3.4606 0.7548 14 1 5.4349 4.6571 -1.3424 15 1 3.5591 3.1598 -0.9958 16 6 3.9569 -1.6655 0.0657 17 6 3.4651 -0.9451 1.3249 18 7 2.0225 -0.6980 1.1953 19 6 1.1674 -1.1034 2.1550 20 8 -0.0073 -0.8106 2.0837 21 6 1.6711 -1.9205 3.3168 22 6 0.4883 -2.3589 4.1827 23 6 -0.0422 -1.3056 5.1574 24 6 0.4437 -3.8216 4.6295 25 6 -0.5266 -3.3188 3.5586 26 1 -0.3633 0.6189 0.8204 27 1 -0.3634 0.4009 -0.9462 28 1 -0.3633 -1.0200 0.1259 29 1 1.7660 -0.1695 -2.1366 30 1 1.6030 -1.7269 -1.2891 31 1 3.6365 1.2238 -0.7159 32 1 7.6238 3.0612 -1.7598 33 1 3.4984 -2.6528 0.0087 34 1 5.0412 -1.7698 0.1057 35 1 3.6519 -1.5687 2.1992 36 1 3.9903 0.0039 1.4317 37 1 2.1934 -2.8009 2.9424 38 1 2.3557 -1.3188 3.9146 39 1 -0.3518 -0.4201 4.6023 40 1 -0.8958 -1.7106 5.7008 41 1 0.7431 -1.0357 5.8635 42 1 1.2567 -4.4716 4.3062 43 1 0.0364 -4.0336 5.6180 44 1 -1.5722 -3.2000 3.8427 45 1 -0.3519 -3.6376 2.5311 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044690981.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:59:32 Heat of formation + Delta-G solvation = -6.915403 kcal Electronic energy + Delta-G solvation = -23460.640338 eV Core-core repulsion = 20285.817827 eV Total energy + Delta-G solvation = -3174.822511 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.65230 -39.45758 -38.14314 -35.89567 -34.14522 -33.72176 -31.47348 -30.34995 -29.01172 -28.18766 -25.66843 -24.94336 -23.36798 -23.20885 -21.52560 -20.08123 -19.79386 -19.25463 -17.65816 -17.16686 -16.74020 -16.39818 -16.18618 -15.85522 -15.24977 -15.10983 -14.85855 -14.73180 -14.49929 -14.34668 -13.87481 -13.68287 -13.33572 -13.18298 -13.05832 -12.98736 -12.84502 -12.64017 -12.52845 -12.30067 -12.12885 -12.03916 -11.96613 -11.91546 -11.71802 -11.43359 -11.06084 -10.94625 -10.62847 -9.90319 -9.50600 -9.24928 -8.00516 -5.31991 1.35974 1.36445 1.43861 1.75139 2.02759 2.47352 2.93035 3.31584 3.59713 3.67559 3.73371 3.89323 3.95507 3.96206 4.04444 4.13271 4.21298 4.29187 4.33851 4.47276 4.61296 4.62697 4.68996 4.74422 4.83778 4.84796 4.90100 4.98314 5.03234 5.05007 5.09214 5.10162 5.19415 5.23147 5.26974 5.31210 5.32030 5.40106 5.42290 5.74609 5.82146 6.23972 6.57859 7.10277 7.32664 7.87248 8.05107 9.21315 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.024944 B = 0.004648 C = 0.004640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.252033 B = 6022.330512 C = 6033.556155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.143 3.857 3 H 0.047 0.953 4 C -0.125 4.125 5 C 0.170 3.830 6 H 0.049 0.951 7 N -0.747 5.747 8 C -0.217 4.217 9 H 0.063 0.937 10 C -0.058 4.058 11 N -0.983 5.983 12 Si 0.940 3.060 13 H -0.280 1.280 14 H -0.299 1.299 15 H -0.260 1.260 16 C -0.140 4.140 17 C 0.116 3.884 18 N -0.607 5.607 19 C 0.510 3.490 20 O -0.555 6.555 21 C -0.103 4.103 22 C -0.120 4.120 23 C -0.109 4.109 24 C -0.158 4.158 25 C -0.169 4.169 26 H 0.058 0.942 27 H 0.050 0.950 28 H 0.060 0.940 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.361 0.639 32 H 0.256 0.744 33 H 0.080 0.920 34 H 0.063 0.937 35 H 0.109 0.891 36 H 0.052 0.948 37 H 0.109 0.891 38 H 0.108 0.892 39 H 0.043 0.957 40 H 0.061 0.939 41 H 0.066 0.934 42 H 0.105 0.895 43 H 0.105 0.895 44 H 0.088 0.912 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.762 -11.928 12.677 22.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.039 3.961 3 H 0.065 0.935 4 C -0.163 4.163 5 C 0.062 3.938 6 H 0.067 0.933 7 N -0.391 5.391 8 C -0.349 4.349 9 H 0.081 0.919 10 C -0.250 4.250 11 N -0.635 5.635 12 Si 0.769 3.231 13 H -0.206 1.206 14 H -0.226 1.226 15 H -0.185 1.185 16 C -0.181 4.181 17 C -0.006 4.006 18 N -0.341 5.341 19 C 0.300 3.700 20 O -0.434 6.434 21 C -0.143 4.143 22 C -0.120 4.120 23 C -0.166 4.166 24 C -0.195 4.195 25 C -0.206 4.206 26 H 0.077 0.923 27 H 0.069 0.931 28 H 0.079 0.921 29 H 0.091 0.909 30 H 0.104 0.896 31 H 0.195 0.805 32 H 0.065 0.935 33 H 0.099 0.901 34 H 0.082 0.918 35 H 0.127 0.873 36 H 0.070 0.930 37 H 0.127 0.873 38 H 0.126 0.874 39 H 0.062 0.938 40 H 0.080 0.920 41 H 0.085 0.915 42 H 0.123 0.877 43 H 0.123 0.877 44 H 0.107 0.893 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -15.190 -11.822 12.543 22.975 hybrid contribution 0.146 1.439 -0.127 1.452 sum -15.044 -10.384 12.416 22.098 Atomic orbital electron populations 1.21997 0.92255 1.02836 1.00442 1.21132 0.95516 0.94589 0.84858 0.93509 1.22163 0.95250 1.01740 0.97177 1.20417 0.91693 0.85247 0.96461 0.93317 1.42878 1.12574 1.07112 1.76581 1.19040 0.89333 0.94783 1.31702 0.91931 1.25309 0.97069 0.99743 1.02840 1.69854 1.15552 1.22386 1.55661 0.85635 0.79307 0.79841 0.78330 1.20626 1.22559 1.18470 1.22334 1.01145 0.98932 0.95673 1.21692 0.78828 1.00691 0.99381 1.48290 1.07930 1.57661 1.20177 1.21083 0.85750 0.79691 0.83496 1.90704 1.17994 1.57437 1.77226 1.21334 0.98165 1.00799 0.93976 1.21092 0.98231 0.92060 1.00660 1.21251 1.00742 0.97351 0.97304 1.23227 1.02105 0.94570 0.99603 1.22835 0.96159 1.03725 0.97858 0.92317 0.93077 0.92088 0.90895 0.89583 0.80465 0.93526 0.90115 0.91838 0.87302 0.93007 0.87282 0.87425 0.93811 0.91976 0.91534 0.87699 0.87678 0.89350 0.90158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.36 7.61 71.98 0.55 -2.81 16 2 C 0.14 4.28 3.19 44.97 0.14 4.42 16 3 H 0.05 1.61 6.65 -2.39 -0.02 1.59 16 4 C -0.12 -3.62 5.07 30.67 0.16 -3.46 16 5 C 0.17 5.86 3.10 45.02 0.14 6.00 16 6 H 0.05 1.79 8.08 -2.39 -0.02 1.77 16 7 N -0.75 -32.65 4.11 -322.82 -1.33 -33.98 16 8 C -0.22 -11.77 10.41 84.03 0.87 -10.89 16 9 H 0.06 3.69 8.06 -2.91 -0.02 3.67 16 10 C -0.06 -3.34 5.50 84.86 0.47 -2.87 16 11 N -0.98 -61.84 13.97 21.65 0.30 -61.54 16 12 Si 0.94 45.18 27.74 68.60 1.90 47.08 16 13 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 14 H -0.30 -14.69 7.11 99.48 0.71 -13.98 16 15 H -0.26 -11.51 6.51 99.48 0.65 -10.86 16 16 C -0.14 -4.04 5.78 30.67 0.18 -3.87 16 17 C 0.12 3.12 6.10 86.36 0.53 3.64 16 18 N -0.61 -16.67 2.97 -795.06 -2.36 -19.03 16 19 C 0.51 13.29 7.36 87.66 0.65 13.93 16 20 O -0.55 -16.99 10.51 -3.02 -0.03 -17.02 16 21 C -0.10 -1.95 3.99 29.85 0.12 -1.83 16 22 C -0.12 -2.22 1.59 -52.18 -0.08 -2.30 16 23 C -0.11 -2.04 9.65 71.98 0.69 -1.35 16 24 C -0.16 -2.28 9.89 30.60 0.30 -1.98 16 25 C -0.17 -3.21 9.17 30.60 0.28 -2.93 16 26 H 0.06 1.84 6.67 -2.39 -0.02 1.82 16 27 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.06 1.77 6.83 -2.39 -0.02 1.76 16 29 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 30 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 31 H 0.36 15.75 3.93 -92.71 -0.36 15.38 16 32 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 33 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.06 2.04 8.14 -2.38 -0.02 2.02 16 35 H 0.11 2.14 5.92 -2.39 -0.01 2.13 16 36 H 0.05 1.69 7.74 -2.39 -0.02 1.67 16 37 H 0.11 1.67 7.46 -2.39 -0.02 1.65 16 38 H 0.11 1.80 7.95 -2.38 -0.02 1.78 16 39 H 0.04 1.02 7.59 -2.39 -0.02 1.00 16 40 H 0.06 1.03 8.11 -2.39 -0.02 1.01 16 41 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.10 1.28 8.08 -2.39 -0.02 1.26 16 43 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 45 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -65.79 343.08 4.01 -61.78 By element: Atomic # 1 Polarization: 28.48 SS G_CDS: 0.54 Total: 29.01 kcal Atomic # 6 Polarization: -11.29 SS G_CDS: 4.99 Total: -6.30 kcal Atomic # 7 Polarization: -111.17 SS G_CDS: -3.39 Total: -114.56 kcal Atomic # 8 Polarization: -16.99 SS G_CDS: -0.03 Total: -17.02 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 1.90 Total: 47.08 kcal Total: -65.79 4.01 -61.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044690981.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.864 kcal (2) G-P(sol) polarization free energy of solvation -65.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds