Wall clock time and date at job start Tue Mar 31 2020 01:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.58489 * 2 1 4 4 C 1.53188 * 109.58864 * 120.28825 * 2 1 3 5 5 C 1.53041 * 109.31362 * 174.56080 * 4 2 1 6 6 H 1.08998 * 109.45819 * 178.62499 * 5 4 2 7 7 N 1.46503 * 109.45864 * 58.65586 * 5 4 2 8 8 C 1.36937 * 120.00231 * 154.99553 * 7 5 4 9 9 H 1.07999 * 119.99772 * 0.02562 * 8 7 5 10 10 C 1.38815 * 120.00018 * 179.97438 * 8 7 5 11 11 N 1.31621 * 119.99976 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 119.99582 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.47368 * 0.02562 * 12 10 8 14 14 H 1.48497 * 109.46838 * 120.00479 * 12 10 8 15 15 H 1.48498 * 109.46986 * 239.99988 * 12 10 8 16 16 C 1.53035 * 109.53774 * 298.63727 * 5 4 2 17 17 C 1.53194 * 109.31651 * 61.36612 * 16 5 4 18 18 N 1.46930 * 108.77167 * 305.36070 * 17 16 5 19 19 C 1.34768 * 120.63530 * 233.62986 * 18 17 16 20 20 O 1.21283 * 120.00520 * 185.32933 * 19 18 17 21 21 C 1.50711 * 119.99542 * 5.32650 * 19 18 17 22 22 C 1.53005 * 109.46767 * 174.24031 * 21 19 18 23 23 C 1.52996 * 115.55002 * 294.09074 * 22 21 19 24 24 C 1.52998 * 117.49402 * 148.42369 * 22 21 19 25 25 C 1.53001 * 117.49608 * 79.76485 * 22 21 19 26 26 H 1.09001 * 109.47201 * 292.49471 * 1 2 3 27 27 H 1.08996 * 109.47262 * 52.49404 * 1 2 3 28 28 H 1.08999 * 109.47451 * 172.49895 * 1 2 3 29 29 H 1.09005 * 109.49923 * 54.60972 * 4 2 1 30 30 H 1.09003 * 109.49841 * 294.51859 * 4 2 1 31 31 H 0.97006 * 119.99814 * 335.28091 * 7 5 4 32 32 H 0.96996 * 119.99266 * 179.97438 * 11 10 8 33 33 H 1.09004 * 109.49472 * 181.31558 * 16 5 4 34 34 H 1.08999 * 109.49774 * 301.40622 * 16 5 4 35 35 H 1.08991 * 109.58674 * 185.57834 * 17 16 5 36 36 H 1.08999 * 109.70161 * 65.21570 * 17 16 5 37 37 H 1.08996 * 109.46907 * 294.24004 * 21 19 18 38 38 H 1.08994 * 109.46910 * 54.24420 * 21 19 18 39 39 H 1.09003 * 109.47250 * 63.29754 * 23 22 21 40 40 H 1.08998 * 109.46882 * 183.29737 * 23 22 21 41 41 H 1.09001 * 109.47178 * 303.29653 * 23 22 21 42 42 H 1.09000 * 117.50046 * 359.97438 * 24 22 21 43 43 H 1.09000 * 117.49958 * 145.02406 * 24 22 21 44 44 H 1.08999 * 117.49345 * 214.97416 * 25 22 21 45 45 H 1.08998 * 117.50056 * 359.97438 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7279 1.2462 5 6 3.5678 -0.8435 1.1727 6 1 3.9381 -1.3394 2.0700 7 7 4.1548 0.4954 1.0777 8 6 5.4382 0.7122 1.5032 9 1 6.0179 -0.1040 1.9084 10 6 5.9946 1.9808 1.4127 11 7 5.2883 2.9754 0.9184 12 14 7.7455 2.2762 1.9925 13 1 8.3195 1.0048 2.5018 14 1 8.5661 2.7696 0.8574 15 1 7.7431 3.2889 3.0785 16 6 3.9603 -1.6608 -0.0602 17 6 3.4685 -0.9435 -1.3213 18 7 2.0253 -0.6990 -1.1937 19 6 1.1720 -1.1084 -2.1532 20 8 -0.0032 -0.8168 -2.0844 21 6 1.6782 -1.9287 -3.3118 22 6 0.4962 -2.3801 -4.1720 23 6 -0.4741 -3.3544 -3.5012 24 6 0.7379 -2.5453 -5.6737 25 6 -0.0891 -1.3656 -5.1565 26 1 -0.3634 0.3932 0.9495 27 1 -0.3633 0.6257 -0.8152 28 1 -0.3634 -1.0188 -0.1342 29 1 1.6049 -1.7247 1.2920 30 1 1.7638 -0.1656 2.1372 31 1 3.6329 1.2294 0.7172 32 1 5.6770 3.8618 0.8555 33 1 5.0448 -1.7625 -0.0991 34 1 3.5036 -2.6489 -0.0021 35 1 3.6574 -1.5682 -2.1941 36 1 3.9917 0.0063 -1.4314 37 1 2.3571 -1.3256 -3.9147 38 1 2.2075 -2.8033 -2.9338 39 1 -0.9451 -2.8679 -2.6470 40 1 -1.2400 -3.6545 -4.2163 41 1 0.0716 -4.2351 -3.1624 42 1 1.7389 -2.3320 -6.0489 43 1 0.2053 -3.3479 -6.1839 44 1 -1.1654 -1.3926 -5.3265 45 1 0.3676 -0.3765 -5.1910 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044690985.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:59:35 Heat of formation + Delta-G solvation = 5.288891 kcal Electronic energy + Delta-G solvation = -23337.516773 eV Core-core repulsion = 20163.223480 eV Total energy + Delta-G solvation = -3174.293293 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.36089 -38.28195 -36.90131 -34.13254 -32.74415 -31.88511 -29.53618 -28.96929 -27.96366 -26.80781 -24.05825 -23.45255 -22.45366 -22.00519 -20.17775 -18.92700 -18.05160 -17.21332 -16.45227 -15.82369 -15.63275 -14.91660 -14.56183 -14.31486 -13.98657 -13.85798 -13.55168 -13.27625 -13.14747 -12.67377 -12.57144 -12.26125 -12.12233 -11.94940 -11.84927 -11.52031 -11.36827 -11.18943 -11.11813 -10.93331 -10.79267 -10.57326 -10.41567 -10.25543 -10.20314 -9.94309 -9.74234 -9.64366 -8.96332 -8.65195 -8.06590 -6.99853 -5.80500 -3.09392 2.95677 3.26962 3.40154 3.46257 3.48347 3.81524 4.56018 4.60507 4.69176 4.81346 4.96449 5.07333 5.27577 5.34435 5.44814 5.48582 5.53030 5.56529 5.58206 5.60460 5.73216 5.78918 5.81625 5.87722 5.92628 5.93734 6.01617 6.05640 6.11651 6.16466 6.21532 6.31396 6.33424 6.46569 6.53015 6.65313 6.74079 6.80339 6.85943 7.11737 7.67409 7.85782 8.38024 8.56674 9.49522 10.06574 10.41462 11.42027 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.026298 B = 0.004270 C = 0.004067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.467882 B = 6555.650153 C = 6883.865032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.146 3.854 3 H 0.077 0.923 4 C -0.133 4.133 5 C 0.173 3.827 6 H 0.050 0.950 7 N -0.722 5.722 8 C -0.239 4.239 9 H 0.070 0.930 10 C -0.012 4.012 11 N -0.932 5.932 12 Si 0.904 3.096 13 H -0.281 1.281 14 H -0.292 1.292 15 H -0.292 1.292 16 C -0.149 4.149 17 C 0.114 3.886 18 N -0.601 5.601 19 C 0.513 3.487 20 O -0.537 6.537 21 C -0.106 4.106 22 C -0.104 4.104 23 C -0.114 4.114 24 C -0.181 4.181 25 C -0.161 4.161 26 H 0.039 0.961 27 H 0.071 0.929 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.073 0.927 31 H 0.384 0.616 32 H 0.254 0.746 33 H 0.072 0.928 34 H 0.048 0.952 35 H 0.069 0.931 36 H 0.083 0.917 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.073 0.927 40 H 0.051 0.949 41 H 0.052 0.948 42 H 0.092 0.908 43 H 0.092 0.908 44 H 0.092 0.908 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.630 -11.901 -8.919 17.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.043 3.957 3 H 0.095 0.905 4 C -0.172 4.172 5 C 0.063 3.937 6 H 0.068 0.932 7 N -0.365 5.365 8 C -0.370 4.370 9 H 0.088 0.912 10 C -0.208 4.208 11 N -0.580 5.580 12 Si 0.736 3.264 13 H -0.206 1.206 14 H -0.220 1.220 15 H -0.219 1.219 16 C -0.190 4.190 17 C -0.008 4.008 18 N -0.334 5.334 19 C 0.302 3.698 20 O -0.415 6.415 21 C -0.146 4.146 22 C -0.105 4.105 23 C -0.171 4.171 24 C -0.218 4.218 25 C -0.198 4.198 26 H 0.058 0.942 27 H 0.090 0.910 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.091 0.909 31 H 0.219 0.781 32 H 0.064 0.936 33 H 0.091 0.909 34 H 0.067 0.933 35 H 0.087 0.913 36 H 0.102 0.898 37 H 0.108 0.892 38 H 0.110 0.890 39 H 0.092 0.908 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.110 0.890 43 H 0.111 0.889 44 H 0.110 0.890 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -9.069 -11.739 -8.792 17.244 hybrid contribution 1.165 0.506 0.180 1.283 sum -7.904 -11.233 -8.612 16.212 Atomic orbital electron populations 1.22147 0.93302 1.03091 1.00325 1.21205 0.94716 0.95997 0.83787 0.90500 1.22233 0.97327 1.00164 0.97430 1.20190 0.90497 0.88088 0.94925 0.93236 1.42524 1.13772 1.04642 1.75519 1.19283 0.89825 0.94153 1.33729 0.91156 1.24722 0.98253 0.95908 1.01936 1.69667 1.36413 1.00603 1.51350 0.86157 0.84698 0.77648 0.77910 1.20605 1.21952 1.21939 1.22499 1.01328 0.97900 0.97248 1.21709 0.79431 1.01671 0.98036 1.48210 1.07679 1.57220 1.20271 1.20447 0.86152 0.80033 0.83203 1.90692 1.17014 1.57085 1.76741 1.21275 0.97474 1.00198 0.95638 1.21017 0.98162 1.01380 0.89904 1.21314 0.97505 0.97278 1.00983 1.23137 1.01527 1.01242 0.95908 1.22908 0.99481 0.94386 1.03005 0.94237 0.91022 0.92008 0.92215 0.90885 0.78129 0.93561 0.90903 0.93337 0.91286 0.89843 0.89163 0.88963 0.90826 0.92966 0.92856 0.88968 0.88941 0.88994 0.89081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.11 7.62 37.16 0.28 -1.82 16 2 C 0.15 2.47 3.19 -67.60 -0.22 2.26 16 3 H 0.08 1.50 6.64 -51.93 -0.34 1.16 16 4 C -0.13 -2.20 5.07 -26.61 -0.13 -2.33 16 5 C 0.17 3.25 3.10 -67.89 -0.21 3.04 16 6 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 7 N -0.72 -16.92 4.31 -53.39 -0.23 -17.15 16 8 C -0.24 -6.29 9.93 -15.06 -0.15 -6.44 16 9 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 10 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 11 N -0.93 -27.31 13.06 55.49 0.72 -26.58 16 12 Si 0.90 21.79 29.55 -169.99 -5.02 16.76 16 13 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 14 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 15 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 16 C -0.15 -2.41 5.78 -26.61 -0.15 -2.56 16 17 C 0.11 1.78 6.09 -3.71 -0.02 1.76 16 18 N -0.60 -9.52 2.97 -165.22 -0.49 -10.01 16 19 C 0.51 7.76 7.32 -10.98 -0.08 7.68 16 20 O -0.54 -9.11 10.17 5.56 0.06 -9.05 16 21 C -0.11 -1.26 3.95 -27.87 -0.11 -1.37 16 22 C -0.10 -1.18 1.59 -154.51 -0.25 -1.42 16 23 C -0.11 -1.26 9.46 37.16 0.35 -0.91 16 24 C -0.18 -1.73 9.92 -26.69 -0.26 -1.99 16 25 C -0.16 -1.80 9.84 -26.69 -0.26 -2.06 16 26 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.07 1.24 6.72 -51.93 -0.35 0.89 16 28 H 0.06 1.01 6.79 -51.93 -0.35 0.66 16 29 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.38 9.67 6.06 -40.82 -0.25 9.42 16 32 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 33 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.87 5.92 -51.93 -0.31 0.57 16 36 H 0.08 1.56 7.74 -51.93 -0.40 1.16 16 37 H 0.09 1.00 7.92 -51.93 -0.41 0.59 16 38 H 0.09 0.98 7.64 -51.93 -0.40 0.58 16 39 H 0.07 0.96 6.78 -51.93 -0.35 0.61 16 40 H 0.05 0.51 8.10 -51.93 -0.42 0.09 16 41 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 45 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 LS Contribution 345.70 15.07 5.21 5.21 Total: -1.00 -28.97 345.70 -8.84 -37.81 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: -7.78 Total: 9.62 kcal Atomic # 6 Polarization: -5.30 SS G_CDS: -1.31 Total: -6.62 kcal Atomic # 7 Polarization: -53.74 SS G_CDS: 0.00 Total: -53.74 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: 0.06 Total: -9.05 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -28.97 -8.84 -37.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044690985.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.100 kcal (2) G-P(sol) polarization free energy of solvation -28.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds