Wall clock time and date at job start Tue Mar 31 2020 01:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.58489 * 2 1 4 4 C 1.53188 * 109.58864 * 120.28825 * 2 1 3 5 5 C 1.53041 * 109.31362 * 174.56080 * 4 2 1 6 6 H 1.08998 * 109.45819 * 178.62499 * 5 4 2 7 7 N 1.46503 * 109.45864 * 58.65586 * 5 4 2 8 8 C 1.36937 * 120.00231 * 154.99553 * 7 5 4 9 9 H 1.07999 * 119.99772 * 0.02562 * 8 7 5 10 10 C 1.38815 * 120.00018 * 179.97438 * 8 7 5 11 11 N 1.31621 * 119.99976 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 119.99582 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.47368 * 0.02562 * 12 10 8 14 14 H 1.48497 * 109.46838 * 120.00479 * 12 10 8 15 15 H 1.48498 * 109.46986 * 239.99988 * 12 10 8 16 16 C 1.53035 * 109.53774 * 298.63727 * 5 4 2 17 17 C 1.53194 * 109.31651 * 61.36612 * 16 5 4 18 18 N 1.46930 * 108.77167 * 305.36070 * 17 16 5 19 19 C 1.34768 * 120.63530 * 233.62986 * 18 17 16 20 20 O 1.21283 * 120.00520 * 185.32933 * 19 18 17 21 21 C 1.50711 * 119.99542 * 5.32650 * 19 18 17 22 22 C 1.53005 * 109.46767 * 174.24031 * 21 19 18 23 23 C 1.52996 * 115.55002 * 294.09074 * 22 21 19 24 24 C 1.52998 * 117.49402 * 148.42369 * 22 21 19 25 25 C 1.53001 * 117.49608 * 79.76485 * 22 21 19 26 26 H 1.09001 * 109.47201 * 292.49471 * 1 2 3 27 27 H 1.08996 * 109.47262 * 52.49404 * 1 2 3 28 28 H 1.08999 * 109.47451 * 172.49895 * 1 2 3 29 29 H 1.09005 * 109.49923 * 54.60972 * 4 2 1 30 30 H 1.09003 * 109.49841 * 294.51859 * 4 2 1 31 31 H 0.97006 * 119.99814 * 335.28091 * 7 5 4 32 32 H 0.96996 * 119.99266 * 179.97438 * 11 10 8 33 33 H 1.09004 * 109.49472 * 181.31558 * 16 5 4 34 34 H 1.08999 * 109.49774 * 301.40622 * 16 5 4 35 35 H 1.08991 * 109.58674 * 185.57834 * 17 16 5 36 36 H 1.08999 * 109.70161 * 65.21570 * 17 16 5 37 37 H 1.08996 * 109.46907 * 294.24004 * 21 19 18 38 38 H 1.08994 * 109.46910 * 54.24420 * 21 19 18 39 39 H 1.09003 * 109.47250 * 63.29754 * 23 22 21 40 40 H 1.08998 * 109.46882 * 183.29737 * 23 22 21 41 41 H 1.09001 * 109.47178 * 303.29653 * 23 22 21 42 42 H 1.09000 * 117.50046 * 359.97438 * 24 22 21 43 43 H 1.09000 * 117.49958 * 145.02406 * 24 22 21 44 44 H 1.08999 * 117.49345 * 214.97416 * 25 22 21 45 45 H 1.08998 * 117.50056 * 359.97438 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7279 1.2462 5 6 3.5678 -0.8435 1.1727 6 1 3.9381 -1.3394 2.0700 7 7 4.1548 0.4954 1.0777 8 6 5.4382 0.7122 1.5032 9 1 6.0179 -0.1040 1.9084 10 6 5.9946 1.9808 1.4127 11 7 5.2883 2.9754 0.9184 12 14 7.7455 2.2762 1.9925 13 1 8.3195 1.0048 2.5018 14 1 8.5661 2.7696 0.8574 15 1 7.7431 3.2889 3.0785 16 6 3.9603 -1.6608 -0.0602 17 6 3.4685 -0.9435 -1.3213 18 7 2.0253 -0.6990 -1.1937 19 6 1.1720 -1.1084 -2.1532 20 8 -0.0032 -0.8168 -2.0844 21 6 1.6782 -1.9287 -3.3118 22 6 0.4962 -2.3801 -4.1720 23 6 -0.4741 -3.3544 -3.5012 24 6 0.7379 -2.5453 -5.6737 25 6 -0.0891 -1.3656 -5.1565 26 1 -0.3634 0.3932 0.9495 27 1 -0.3633 0.6257 -0.8152 28 1 -0.3634 -1.0188 -0.1342 29 1 1.6049 -1.7247 1.2920 30 1 1.7638 -0.1656 2.1372 31 1 3.6329 1.2294 0.7172 32 1 5.6770 3.8618 0.8555 33 1 5.0448 -1.7625 -0.0991 34 1 3.5036 -2.6489 -0.0021 35 1 3.6574 -1.5682 -2.1941 36 1 3.9917 0.0063 -1.4314 37 1 2.3571 -1.3256 -3.9147 38 1 2.2075 -2.8033 -2.9338 39 1 -0.9451 -2.8679 -2.6470 40 1 -1.2400 -3.6545 -4.2163 41 1 0.0716 -4.2351 -3.1624 42 1 1.7389 -2.3320 -6.0489 43 1 0.2053 -3.3479 -6.1839 44 1 -1.1654 -1.3926 -5.3265 45 1 0.3676 -0.3765 -5.1910 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044690985.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:59:34 Heat of formation + Delta-G solvation = -10.218327 kcal Electronic energy + Delta-G solvation = -23338.189216 eV Core-core repulsion = 20163.223480 eV Total energy + Delta-G solvation = -3174.965736 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.59403 -39.38360 -38.10183 -35.79458 -34.09111 -33.60143 -30.93927 -30.27042 -28.94252 -28.13423 -25.73298 -25.11179 -23.32412 -23.20627 -21.47198 -20.06144 -19.35397 -19.09452 -17.66188 -17.07431 -16.80114 -16.40471 -15.82113 -15.66305 -15.51651 -15.26943 -14.83761 -14.68353 -14.30763 -14.16700 -13.69005 -13.47618 -13.27959 -13.13600 -13.02789 -12.88212 -12.80060 -12.56493 -12.43448 -12.30232 -12.13203 -12.05154 -11.92610 -11.86994 -11.59660 -11.36338 -11.07305 -10.89340 -10.62048 -9.87099 -9.41798 -8.94607 -7.90117 -5.17346 1.49036 1.50059 1.59170 1.77660 2.07594 2.59219 2.93566 3.44009 3.67660 3.74848 3.89432 3.91729 3.99026 4.05773 4.11501 4.13940 4.26292 4.35144 4.41370 4.53449 4.62413 4.67067 4.71369 4.79774 4.83578 4.87284 4.93575 4.99282 5.06427 5.09419 5.09817 5.14025 5.22918 5.28422 5.29824 5.31161 5.38221 5.42628 5.47629 5.58673 5.78976 6.32011 6.63568 7.35758 7.38827 8.15288 8.38272 9.33583 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.026298 B = 0.004270 C = 0.004067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.467882 B = 6555.650153 C = 6883.865032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.147 3.853 3 H 0.043 0.957 4 C -0.121 4.121 5 C 0.165 3.835 6 H 0.047 0.953 7 N -0.731 5.731 8 C -0.229 4.229 9 H 0.077 0.923 10 C -0.075 4.075 11 N -0.971 5.971 12 Si 0.966 3.034 13 H -0.265 1.265 14 H -0.297 1.297 15 H -0.300 1.300 16 C -0.139 4.139 17 C 0.120 3.880 18 N -0.603 5.603 19 C 0.509 3.491 20 O -0.558 6.558 21 C -0.101 4.101 22 C -0.117 4.117 23 C -0.110 4.110 24 C -0.156 4.156 25 C -0.178 4.178 26 H 0.048 0.952 27 H 0.054 0.946 28 H 0.062 0.938 29 H 0.083 0.917 30 H 0.066 0.934 31 H 0.372 0.628 32 H 0.247 0.753 33 H 0.065 0.935 34 H 0.079 0.921 35 H 0.106 0.894 36 H 0.046 0.954 37 H 0.100 0.900 38 H 0.114 0.886 39 H 0.048 0.952 40 H 0.061 0.939 41 H 0.065 0.935 42 H 0.104 0.896 43 H 0.107 0.893 44 H 0.090 0.910 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.265 -14.591 -9.712 19.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.043 3.957 3 H 0.061 0.939 4 C -0.160 4.160 5 C 0.056 3.944 6 H 0.065 0.935 7 N -0.373 5.373 8 C -0.361 4.361 9 H 0.095 0.905 10 C -0.267 4.267 11 N -0.622 5.622 12 Si 0.796 3.204 13 H -0.189 1.189 14 H -0.225 1.225 15 H -0.228 1.228 16 C -0.180 4.180 17 C -0.002 4.002 18 N -0.336 5.336 19 C 0.299 3.701 20 O -0.437 6.437 21 C -0.141 4.141 22 C -0.118 4.118 23 C -0.167 4.167 24 C -0.193 4.193 25 C -0.215 4.215 26 H 0.067 0.933 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.101 0.899 30 H 0.084 0.916 31 H 0.205 0.795 32 H 0.056 0.944 33 H 0.084 0.916 34 H 0.097 0.903 35 H 0.124 0.876 36 H 0.064 0.936 37 H 0.118 0.882 38 H 0.132 0.868 39 H 0.067 0.933 40 H 0.080 0.920 41 H 0.084 0.916 42 H 0.122 0.878 43 H 0.126 0.874 44 H 0.108 0.892 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -8.708 -14.495 -9.584 19.437 hybrid contribution 0.960 1.296 0.422 1.667 sum -7.748 -13.199 -9.162 17.838 Atomic orbital electron populations 1.21971 0.92472 1.02695 1.00168 1.21049 0.95176 0.94566 0.84879 0.93940 1.22110 0.95813 1.01196 0.96856 1.20455 0.91641 0.86156 0.96133 0.93485 1.42690 1.12998 1.06299 1.75282 1.19655 0.90802 0.94030 1.31604 0.90465 1.25442 1.01823 0.96042 1.03390 1.69826 1.37983 1.00697 1.53738 0.85169 0.80671 0.77669 0.76845 1.18919 1.22458 1.22754 1.22353 1.01086 0.98756 0.95783 1.21634 0.78853 1.00398 0.99353 1.48246 1.07910 1.57282 1.20208 1.21082 0.85790 0.79777 0.83477 1.90691 1.18037 1.57800 1.77188 1.21311 0.98010 1.00423 0.94325 1.21089 0.98200 1.01604 0.90876 1.21269 0.97785 0.97381 1.00305 1.23202 1.01784 1.00151 0.94149 1.22916 0.99733 0.94510 1.04382 0.93282 0.92694 0.91950 0.89864 0.91579 0.79503 0.94366 0.91632 0.90266 0.87594 0.93585 0.88158 0.86821 0.93323 0.91960 0.91623 0.87809 0.87428 0.89158 0.90284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.70 7.62 71.98 0.55 -3.15 16 2 C 0.15 4.99 3.19 44.97 0.14 5.14 16 3 H 0.04 1.74 6.64 -2.39 -0.02 1.73 16 4 C -0.12 -3.89 5.07 30.67 0.16 -3.74 16 5 C 0.16 6.00 3.10 45.02 0.14 6.14 16 6 H 0.05 1.75 8.08 -2.39 -0.02 1.73 16 7 N -0.73 -34.63 4.31 -322.81 -1.39 -36.02 16 8 C -0.23 -12.06 9.93 84.03 0.83 -11.22 16 9 H 0.08 3.89 7.83 -2.91 -0.02 3.87 16 10 C -0.07 -4.18 5.50 84.86 0.47 -3.71 16 11 N -0.97 -58.52 13.06 21.65 0.28 -58.23 16 12 Si 0.97 45.20 29.55 68.60 2.03 47.23 16 13 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 14 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 15 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 16 C -0.14 -4.20 5.78 30.67 0.18 -4.02 16 17 C 0.12 3.56 6.09 86.36 0.53 4.09 16 18 N -0.60 -18.51 2.97 -795.02 -2.36 -20.88 16 19 C 0.51 14.67 7.32 87.66 0.64 15.32 16 20 O -0.56 -18.66 10.17 -3.04 -0.03 -18.69 16 21 C -0.10 -2.13 3.95 29.85 0.12 -2.01 16 22 C -0.12 -2.37 1.59 -52.18 -0.08 -2.45 16 23 C -0.11 -2.19 9.46 71.98 0.68 -1.51 16 24 C -0.16 -2.49 9.92 30.62 0.30 -2.18 16 25 C -0.18 -3.75 9.84 30.62 0.30 -3.45 16 26 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.05 1.93 6.72 -2.39 -0.02 1.91 16 28 H 0.06 1.98 6.79 -2.39 -0.02 1.97 16 29 H 0.08 2.31 8.14 -2.38 -0.02 2.29 16 30 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 31 H 0.37 19.39 6.06 -92.70 -0.56 18.83 16 32 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 33 H 0.07 2.10 8.14 -2.38 -0.02 2.08 16 34 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.11 2.35 5.92 -2.39 -0.01 2.33 16 36 H 0.05 1.73 7.74 -2.39 -0.02 1.71 16 37 H 0.10 1.94 7.92 -2.39 -0.02 1.92 16 38 H 0.11 1.93 7.64 -2.39 -0.02 1.91 16 39 H 0.05 1.21 6.78 -2.39 -0.02 1.19 16 40 H 0.06 1.08 8.10 -2.39 -0.02 1.06 16 41 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 44 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 45 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -63.43 345.70 3.88 -59.55 By element: Atomic # 1 Polarization: 33.39 SS G_CDS: 0.40 Total: 33.79 kcal Atomic # 6 Polarization: -11.71 SS G_CDS: 4.95 Total: -6.76 kcal Atomic # 7 Polarization: -111.66 SS G_CDS: -3.47 Total: -115.13 kcal Atomic # 8 Polarization: -18.66 SS G_CDS: -0.03 Total: -18.69 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Total: -63.43 3.88 -59.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044690985.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.335 kcal (2) G-P(sol) polarization free energy of solvation -63.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds