Wall clock time and date at job start Tue Mar 31 2020 02:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08991 * 110.88804 * 2 1 4 4 C 1.55132 * 110.90294 * 124.09536 * 2 1 3 5 5 N 1.47423 * 104.72496 * 155.27628 * 4 2 1 6 6 C 1.34777 * 125.65041 * 155.81864 * 5 4 2 7 7 O 1.21283 * 119.99750 * 359.71033 * 6 5 4 8 8 C 1.50702 * 119.99928 * 179.97438 * 6 5 4 9 9 C 1.52996 * 109.47159 * 179.72352 * 8 6 5 10 10 C 1.52994 * 109.47118 * 179.97438 * 9 8 6 11 11 C 1.53782 * 113.61504 * 272.49281 * 10 9 8 12 12 C 1.53777 * 87.08221 * 220.02021 * 11 10 9 13 13 C 1.53779 * 87.08267 * 25.43593 * 12 11 10 14 14 C 1.47023 * 108.69861 * 335.54967 * 5 4 2 15 15 C 1.54316 * 107.27276 * 1.28833 * 14 5 4 16 16 H 1.09004 * 110.71946 * 140.55644 * 15 14 5 17 17 N 1.46500 * 110.72282 * 263.82682 * 15 14 5 18 18 C 1.36935 * 120.00255 * 273.55112 * 17 15 14 19 19 H 1.08002 * 120.00033 * 359.97438 * 18 17 15 20 20 C 1.38817 * 120.00183 * 179.97438 * 18 17 15 21 21 N 1.31622 * 119.99798 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00188 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47079 * 59.99972 * 22 20 18 24 24 H 1.48499 * 109.47126 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47042 * 300.00139 * 22 20 18 26 26 H 1.09001 * 109.47546 * 183.87994 * 1 2 3 27 27 H 1.08993 * 109.47262 * 303.88640 * 1 2 3 28 28 H 1.09003 * 109.46836 * 63.88002 * 1 2 3 29 29 H 1.09004 * 110.50026 * 36.43028 * 4 2 1 30 30 H 1.09006 * 110.34295 * 274.03869 * 4 2 1 31 31 H 1.09004 * 109.46965 * 299.72211 * 8 6 5 32 32 H 1.08994 * 109.46990 * 59.72065 * 8 6 5 33 33 H 1.09004 * 109.47066 * 299.99797 * 9 8 6 34 34 H 1.09000 * 109.47234 * 59.99288 * 9 8 6 35 35 H 1.08999 * 112.84950 * 43.80888 * 10 9 8 36 36 H 1.08999 * 113.61360 * 334.57067 * 11 10 9 37 37 H 1.09001 * 113.61050 * 105.47462 * 11 10 9 38 38 H 1.09005 * 113.61646 * 270.88719 * 12 11 10 39 39 H 1.08999 * 113.61689 * 139.98425 * 12 11 10 40 40 H 1.09000 * 113.61496 * 220.02251 * 13 12 11 41 41 H 1.08991 * 113.69648 * 89.12615 * 13 12 11 42 42 H 1.08997 * 109.88157 * 120.70996 * 14 5 4 43 43 H 1.09005 * 109.88313 * 241.71766 * 14 5 4 44 44 H 0.97009 * 120.00092 * 93.54716 * 17 15 14 45 45 H 0.96999 * 120.00197 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0183 0.0000 4 6 2.0835 -0.8124 1.2001 5 7 3.4270 -1.2434 0.7731 6 6 4.4475 -1.5623 1.5937 7 8 4.3006 -1.5011 2.7960 8 6 5.7728 -1.9893 1.0172 9 6 6.7522 -2.2853 2.1548 10 6 8.0975 -2.7193 1.5696 11 6 8.1911 -4.2294 1.2944 12 6 9.6339 -4.1563 1.8215 13 6 9.1929 -2.9243 2.6293 14 6 3.4674 -1.2740 -0.6963 15 6 2.0862 -0.8076 -1.2024 16 1 2.1923 -0.1693 -2.0796 17 7 1.2268 -1.9569 -1.4968 18 6 1.2816 -2.5555 -2.7272 19 1 1.9581 -2.1800 -3.4808 20 6 0.4676 -3.6448 -3.0061 21 7 -0.3564 -4.1028 -2.0876 22 14 0.5418 -4.4608 -4.6847 23 1 1.9160 -4.9682 -4.9281 24 1 -0.4190 -5.5923 -4.7280 25 1 0.1870 -3.4703 -5.7327 26 1 -0.3634 -1.0253 0.0695 27 1 -0.3633 0.5729 0.8530 28 1 -0.3633 0.4525 -0.9228 29 1 1.4523 -1.6787 1.3983 30 1 2.1514 -0.1810 2.0861 31 1 5.6345 -2.8866 0.4141 32 1 6.1719 -1.1899 0.3930 33 1 6.8905 -1.3879 2.7579 34 1 6.3530 -3.0846 2.7791 35 1 8.4130 -2.1006 0.7295 36 1 7.5282 -4.8289 1.9184 37 1 8.1251 -4.4854 0.2370 38 1 10.3700 -3.9316 1.0495 39 1 9.9159 -5.0070 2.4418 40 1 9.9355 -2.1267 2.6495 41 1 8.8038 -3.1654 3.6185 42 1 4.2426 -0.5996 -1.0600 43 1 3.6676 -2.2887 -1.0406 44 1 0.6189 -2.2941 -0.8202 45 1 -0.9255 -4.8638 -2.2825 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054539721.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:34:37 Heat of formation + Delta-G solvation = -19.620635 kcal Electronic energy + Delta-G solvation = -22335.697482 eV Core-core repulsion = 19160.324031 eV Total energy + Delta-G solvation = -3175.373451 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.87286 -38.94009 -37.54058 -33.91771 -32.85289 -32.12948 -30.47942 -27.74099 -27.19595 -25.74566 -25.18199 -23.85148 -22.37898 -21.53287 -19.56273 -19.27547 -18.65096 -17.53742 -16.57889 -16.00934 -15.56876 -15.34253 -14.85491 -14.54183 -14.07691 -13.93373 -13.61375 -13.10637 -12.93877 -12.77823 -12.55939 -12.52152 -12.19247 -11.94879 -11.82984 -11.56408 -11.40685 -11.12587 -10.98534 -10.92777 -10.77078 -10.66275 -10.47166 -10.31641 -10.29383 -10.18116 -9.92985 -9.68092 -9.47865 -9.01580 -8.19993 -7.08355 -5.85445 -3.15612 2.97664 3.38476 3.38972 3.43506 3.44631 4.46684 4.51212 4.53622 4.58614 4.73664 4.80580 5.08586 5.18477 5.19159 5.30404 5.37185 5.47575 5.51937 5.59843 5.62502 5.64691 5.66259 5.72854 5.77418 5.79134 5.83597 5.94964 5.97042 6.04073 6.18855 6.20764 6.25613 6.27084 6.35392 6.36984 6.45153 6.53444 6.67476 6.76145 6.92526 7.61399 7.95353 8.32465 8.51454 9.44259 9.99326 10.34130 11.36626 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.015039 B = 0.004226 C = 0.003479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.347978 B = 6623.440706 C = 8045.555503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.114 4.114 3 H 0.078 0.922 4 C 0.114 3.886 5 N -0.608 5.608 6 C 0.524 3.476 7 O -0.559 6.559 8 C -0.133 4.133 9 C -0.092 4.092 10 C -0.111 4.111 11 C -0.139 4.139 12 C -0.144 4.144 13 C -0.137 4.137 14 C 0.072 3.928 15 C 0.172 3.828 16 H 0.069 0.931 17 N -0.712 5.712 18 C -0.248 4.248 19 H 0.071 0.929 20 C -0.008 4.008 21 N -0.929 5.929 22 Si 0.907 3.093 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.285 1.285 26 H 0.069 0.931 27 H 0.044 0.956 28 H 0.060 0.940 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.066 0.934 38 H 0.077 0.923 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.081 0.919 42 H 0.054 0.946 43 H 0.077 0.923 44 H 0.387 0.613 45 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.154 5.644 5.764 16.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.134 4.134 3 H 0.096 0.904 4 C -0.008 4.008 5 N -0.341 5.341 6 C 0.313 3.687 7 O -0.439 6.439 8 C -0.173 4.173 9 C -0.130 4.130 10 C -0.130 4.130 11 C -0.177 4.177 12 C -0.181 4.181 13 C -0.175 4.175 14 C -0.054 4.054 15 C 0.060 3.940 16 H 0.087 0.913 17 N -0.354 5.354 18 C -0.379 4.379 19 H 0.089 0.911 20 C -0.204 4.204 21 N -0.577 5.577 22 Si 0.738 3.262 23 H -0.212 1.212 24 H -0.217 1.217 25 H -0.212 1.212 26 H 0.088 0.912 27 H 0.063 0.937 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.111 0.889 32 H 0.106 0.894 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.107 0.893 36 H 0.100 0.900 37 H 0.085 0.915 38 H 0.096 0.904 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.099 0.901 42 H 0.072 0.928 43 H 0.095 0.905 44 H 0.223 0.777 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 14.131 5.568 6.255 16.426 hybrid contribution -0.155 -0.715 -0.875 1.141 sum 13.976 4.853 5.380 15.742 Atomic orbital electron populations 1.21546 0.93441 1.02954 1.00945 1.22648 0.96925 0.98397 0.95421 0.90362 1.22286 0.83129 0.98252 0.97165 1.48502 1.11939 1.65829 1.07842 1.20377 0.85216 0.76949 0.86166 1.90651 1.83700 1.54653 1.14847 1.21617 0.92717 1.03110 0.99877 1.21315 0.92688 1.02293 0.96670 1.22589 0.95083 0.96612 0.98693 1.23007 0.96777 0.96445 1.01454 1.22808 0.97049 0.98460 0.99815 1.22933 0.98182 0.98059 0.98296 1.23261 1.01384 1.02121 0.78673 1.21197 0.88369 0.89841 0.94625 0.91288 1.42452 1.45421 1.32806 1.14689 1.19182 1.18645 1.09495 0.90565 0.91056 1.24747 0.98928 0.98852 0.97907 1.69646 1.27264 1.27521 1.33249 0.86276 0.77217 0.78917 0.83781 1.21233 1.21699 1.21190 0.91219 0.93679 0.92121 0.91356 0.91434 0.88936 0.89367 0.91341 0.91205 0.89301 0.90002 0.91504 0.90417 0.91714 0.91768 0.90087 0.92817 0.90513 0.77720 0.93311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.07 8.85 37.16 0.33 -1.74 16 2 C -0.11 -1.79 3.53 -88.35 -0.31 -2.10 16 3 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 4 C 0.11 1.93 6.35 -2.41 -0.02 1.92 16 5 N -0.61 -10.39 3.32 -170.38 -0.57 -10.96 16 6 C 0.52 8.93 7.85 -10.98 -0.09 8.84 16 7 O -0.56 -11.17 16.24 5.55 0.09 -11.08 16 8 C -0.13 -1.74 4.88 -27.88 -0.14 -1.88 16 9 C -0.09 -1.11 4.34 -26.74 -0.12 -1.22 16 10 C -0.11 -1.09 3.65 -89.81 -0.33 -1.42 16 11 C -0.14 -1.35 7.63 -25.92 -0.20 -1.55 16 12 C -0.14 -1.22 8.08 -25.92 -0.21 -1.43 16 13 C -0.14 -1.22 7.64 -25.92 -0.20 -1.42 16 14 C 0.07 1.20 6.22 -3.07 -0.02 1.18 16 15 C 0.17 3.12 3.36 -66.10 -0.22 2.90 16 16 H 0.07 1.22 8.12 -51.93 -0.42 0.80 16 17 N -0.71 -16.44 4.61 -51.65 -0.24 -16.68 16 18 C -0.25 -6.42 9.98 -15.06 -0.15 -6.57 16 19 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 20 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 21 N -0.93 -26.98 13.06 55.49 0.72 -26.25 16 22 Si 0.91 21.49 29.55 -169.99 -5.02 16.46 16 23 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 25 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 26 H 0.07 1.28 6.37 -51.93 -0.33 0.95 16 27 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.07 1.27 7.99 -51.93 -0.41 0.86 16 30 H 0.07 1.11 8.03 -51.93 -0.42 0.69 16 31 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.07 0.86 8.10 -51.93 -0.42 0.44 16 34 H 0.07 0.93 7.80 -51.93 -0.41 0.53 16 35 H 0.09 0.82 8.13 -51.93 -0.42 0.39 16 36 H 0.08 0.83 7.89 -51.93 -0.41 0.42 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.08 0.74 8.10 -51.93 -0.42 0.32 16 42 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.08 1.43 8.05 -51.93 -0.42 1.02 16 44 H 0.39 9.64 6.10 -40.82 -0.25 9.40 16 45 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 358.23 15.07 5.40 5.40 Total: -1.00 -29.78 358.23 -9.48 -39.26 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: -8.10 Total: 8.65 kcal Atomic # 6 Polarization: -3.04 SS G_CDS: -1.76 Total: -4.80 kcal Atomic # 7 Polarization: -53.81 SS G_CDS: -0.08 Total: -53.89 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: 0.09 Total: -11.08 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -29.78 -9.48 -39.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054539721.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.636 kcal (2) G-P(sol) polarization free energy of solvation -29.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds