Wall clock time and date at job start Tue Mar 31 2020 02:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.99812 * 2 1 4 4 C 1.54327 * 109.87801 * 121.08993 * 2 1 3 5 5 H 1.09002 * 110.72159 * 260.15134 * 4 2 1 6 6 N 1.46495 * 110.72152 * 23.25039 * 4 2 1 7 7 C 1.36933 * 120.00078 * 204.99526 * 6 4 2 8 8 H 1.07996 * 120.00366 * 359.97438 * 7 6 4 9 9 C 1.38815 * 120.00166 * 179.97438 * 7 6 4 10 10 N 1.31625 * 119.99823 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 120.00362 * 179.97438 * 9 7 6 12 12 H 1.48507 * 109.46792 * 0.02562 * 11 9 7 13 13 H 1.48498 * 109.47053 * 119.99955 * 11 9 7 14 14 H 1.48496 * 109.47769 * 240.00412 * 11 9 7 15 15 C 1.55163 * 102.93886 * 141.61296 * 4 2 1 16 16 C 1.55133 * 101.48573 * 324.33527 * 15 4 2 17 17 N 1.47021 * 109.88602 * 238.90193 * 2 1 3 18 18 C 1.34768 * 125.64885 * 61.60488 * 17 2 1 19 19 O 1.21286 * 120.00230 * 0.02562 * 18 17 2 20 20 C 1.50705 * 119.99964 * 180.27588 * 18 17 2 21 21 H 1.08993 * 112.85232 * 334.68298 * 20 18 17 22 22 C 1.53784 * 113.61384 * 203.48018 * 20 18 17 23 23 C 1.53781 * 87.08278 * 270.88363 * 22 20 18 24 24 C 1.53780 * 87.08252 * 334.57085 * 23 22 20 25 25 C 1.52998 * 113.61029 * 270.88291 * 24 23 22 26 26 C 1.52995 * 113.61628 * 139.97952 * 24 23 22 27 27 H 1.08999 * 109.47265 * 179.64183 * 1 2 3 28 28 H 1.08999 * 109.47559 * 299.64518 * 1 2 3 29 29 H 1.09008 * 109.46860 * 59.64570 * 1 2 3 30 30 H 0.97003 * 120.00251 * 25.00071 * 6 4 2 31 31 H 0.96995 * 119.99900 * 180.02562 * 10 9 7 32 32 H 1.08997 * 111.00360 * 82.57586 * 15 4 2 33 33 H 1.08996 * 111.00230 * 206.38967 * 15 4 2 34 34 H 1.09010 * 110.49245 * 278.45454 * 16 15 4 35 35 H 1.08997 * 110.33855 * 156.06390 * 16 15 4 36 36 H 1.08997 * 113.61164 * 25.44086 * 22 20 18 37 37 H 1.09003 * 113.61188 * 156.33580 * 22 20 18 38 38 H 1.09002 * 113.61035 * 89.11990 * 23 22 20 39 39 H 1.08994 * 113.61519 * 220.01847 * 23 22 20 40 40 H 1.09001 * 109.47142 * 157.49814 * 25 24 23 41 41 H 1.09002 * 109.47223 * 277.49668 * 25 24 23 42 42 H 1.09000 * 109.47477 * 37.49843 * 25 24 23 43 43 H 1.09003 * 109.47016 * 327.60966 * 26 24 23 44 44 H 1.09007 * 109.47057 * 87.60007 * 26 24 23 45 45 H 1.08990 * 109.47572 * 207.60574 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0547 -0.7494 1.2428 5 1 2.3499 -0.0459 2.0214 6 7 1.0471 -1.6854 1.7476 7 6 1.0605 -2.0616 3.0641 8 1 1.8142 -1.6686 3.7304 9 6 0.1053 -2.9480 3.5425 10 7 -0.8129 -3.4274 2.7304 11 14 0.1241 -3.4618 5.3383 12 1 1.2492 -2.7873 6.0344 13 1 -1.1581 -3.0719 5.9781 14 1 0.2957 -4.9339 5.4304 15 6 3.2876 -1.5142 0.6926 16 6 2.8099 -1.8825 -0.7367 17 7 2.0301 -0.7141 -1.1838 18 6 1.8075 -0.3622 -2.4656 19 8 1.1437 0.6210 -2.7180 20 6 2.3788 -1.1935 -3.5853 21 1 3.2675 -1.7502 -3.2883 22 6 2.5489 -0.4187 -4.9028 23 6 1.1122 -0.8452 -5.2477 24 6 1.3293 -2.0485 -4.3150 25 6 1.9182 -3.2719 -5.0201 26 6 0.1090 -2.3861 -3.4561 27 1 -0.3634 -1.0276 -0.0064 28 1 -0.3634 0.5083 0.8931 29 1 -0.3633 0.5194 -0.8869 30 1 0.3703 -2.0387 1.1491 31 1 -1.4806 -4.0465 3.0648 32 1 4.1654 -0.8688 0.6607 33 1 3.4855 -2.4106 1.2802 34 1 2.1801 -2.7719 -0.7113 35 1 3.6656 -2.0412 -1.3929 36 1 2.6642 0.6564 -4.7653 37 1 3.3019 -0.8448 -5.5658 38 1 0.3528 -0.1487 -4.8924 39 1 0.9780 -1.1219 -6.2934 40 1 2.4075 -3.9132 -4.2870 41 1 1.1197 -3.8268 -5.5127 42 1 2.6470 -2.9475 -5.7629 43 1 -0.4335 -1.4707 -3.2199 44 1 -0.5447 -3.0646 -4.0043 45 1 0.4358 -2.8634 -2.5323 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074816207.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:20:41 Heat of formation + Delta-G solvation = -4.472767 kcal Electronic energy + Delta-G solvation = -23647.794053 eV Core-core repulsion = 20473.077463 eV Total energy + Delta-G solvation = -3174.716590 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.86025 -38.82569 -36.76272 -33.95919 -31.61724 -30.87587 -30.58319 -29.01406 -27.47191 -26.31179 -25.18809 -23.55516 -22.80774 -22.10982 -20.14647 -18.90488 -17.65272 -17.38161 -16.75220 -15.93486 -15.08699 -14.90404 -14.63034 -14.13806 -14.11155 -13.70740 -13.44081 -13.20313 -13.08829 -12.61350 -12.54957 -12.28189 -12.22011 -12.04183 -11.68744 -11.41319 -11.33339 -11.10464 -10.99027 -10.95791 -10.84861 -10.75425 -10.62993 -10.22858 -10.10872 -10.06771 -9.97608 -9.62377 -9.27563 -8.97234 -8.23928 -7.03484 -5.83075 -3.12340 2.86979 3.30182 3.39545 3.45727 3.47719 4.42108 4.53436 4.57018 4.61591 4.79374 5.03084 5.11392 5.18186 5.30317 5.42202 5.48898 5.56560 5.60852 5.63688 5.67021 5.71348 5.78727 5.79877 5.87105 5.88520 5.92750 6.01261 6.02230 6.10067 6.16757 6.26675 6.37466 6.42036 6.43631 6.50457 6.54040 6.63712 6.76281 6.90992 7.04446 7.65898 7.93465 8.35283 8.52739 9.47144 10.02615 10.37755 11.39270 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.026038 B = 0.004620 C = 0.004420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.081151 B = 6058.892203 C = 6333.382431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.126 3.874 3 H 0.068 0.932 4 C 0.171 3.829 5 H 0.069 0.931 6 N -0.713 5.713 7 C -0.243 4.243 8 H 0.072 0.928 9 C -0.010 4.010 10 N -0.930 5.930 11 Si 0.906 3.094 12 H -0.280 1.280 13 H -0.292 1.292 14 H -0.292 1.292 15 C -0.160 4.160 16 C 0.106 3.894 17 N -0.604 5.604 18 C 0.549 3.451 19 O -0.546 6.546 20 C -0.130 4.130 21 H 0.090 0.910 22 C -0.119 4.119 23 C -0.129 4.129 24 C -0.066 4.066 25 C -0.127 4.127 26 C -0.143 4.143 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.053 0.947 30 H 0.388 0.612 31 H 0.255 0.745 32 H 0.060 0.940 33 H 0.086 0.914 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.074 0.926 37 H 0.083 0.917 38 H 0.092 0.908 39 H 0.064 0.936 40 H 0.060 0.940 41 H 0.061 0.939 42 H 0.057 0.943 43 H 0.061 0.939 44 H 0.056 0.944 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.830 2.381 -14.278 16.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.022 3.978 3 H 0.086 0.914 4 C 0.059 3.941 5 H 0.087 0.913 6 N -0.355 5.355 7 C -0.374 4.374 8 H 0.090 0.910 9 C -0.206 4.206 10 N -0.578 5.578 11 Si 0.737 3.263 12 H -0.205 1.205 13 H -0.219 1.219 14 H -0.219 1.219 15 C -0.201 4.201 16 C -0.017 4.017 17 N -0.338 5.338 18 C 0.338 3.662 19 O -0.425 6.425 20 C -0.152 4.152 21 H 0.109 0.891 22 C -0.157 4.157 23 C -0.166 4.166 24 C -0.067 4.067 25 C -0.184 4.184 26 C -0.200 4.200 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.072 0.928 30 H 0.225 0.775 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.105 0.895 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.093 0.907 37 H 0.102 0.898 38 H 0.110 0.890 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.076 0.924 43 H 0.080 0.920 44 H 0.075 0.925 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 7.462 2.890 -14.277 16.367 hybrid contribution -0.131 -0.652 0.922 1.137 sum 7.331 2.238 -13.355 15.399 Atomic orbital electron populations 1.21904 0.94308 1.02863 1.01486 1.21992 0.95395 0.95543 0.84838 0.91377 1.21199 0.89108 0.91626 0.92146 0.91293 1.42555 1.32666 1.51408 1.08880 1.19291 1.10742 1.21171 0.86183 0.91001 1.24735 0.97909 1.00091 0.97861 1.69671 1.18429 1.35607 1.34120 0.86135 0.77262 0.78014 0.84847 1.20531 1.21887 1.21905 1.23554 0.99228 1.02300 0.95032 1.22337 0.94454 0.88825 0.96036 1.48611 1.52059 1.28205 1.04881 1.19517 0.80055 0.84684 0.81955 1.90637 1.40315 1.28187 1.83316 1.22589 1.00061 0.98457 0.94066 0.89148 1.22691 0.97659 1.00604 0.94757 1.23097 0.97577 0.97159 0.98781 1.21679 0.94871 0.94322 0.95808 1.21605 1.00672 0.96149 0.99943 1.21820 0.96639 1.02054 0.99484 0.91609 0.91655 0.92826 0.77538 0.93488 0.92091 0.89509 0.91122 0.91866 0.90740 0.89849 0.88999 0.91771 0.92113 0.92020 0.92407 0.92010 0.92459 0.92073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.83 8.51 37.16 0.32 -2.52 16 2 C 0.13 2.24 3.43 -66.95 -0.23 2.01 16 3 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 4 C 0.17 3.23 3.48 -66.09 -0.23 3.00 16 5 H 0.07 1.30 8.09 -51.93 -0.42 0.88 16 6 N -0.71 -16.70 4.54 -51.65 -0.23 -16.93 16 7 C -0.24 -6.37 9.96 -15.06 -0.15 -6.52 16 8 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 9 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 10 N -0.93 -27.16 13.06 55.49 0.72 -26.43 16 11 Si 0.91 21.71 29.55 -169.99 -5.02 16.69 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 13 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 14 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 15 C -0.16 -2.57 6.78 -24.46 -0.17 -2.73 16 16 C 0.11 1.60 6.64 -2.41 -0.02 1.58 16 17 N -0.60 -9.85 3.06 -162.87 -0.50 -10.35 16 18 C 0.55 8.89 5.48 -10.99 -0.06 8.83 16 19 O -0.55 -10.34 14.18 5.55 0.08 -10.26 16 20 C -0.13 -1.66 3.42 -90.95 -0.31 -1.97 16 21 H 0.09 1.04 6.57 -51.93 -0.34 0.69 16 22 C -0.12 -1.35 7.08 -25.92 -0.18 -1.53 16 23 C -0.13 -1.51 6.78 -25.92 -0.18 -1.69 16 24 C -0.07 -0.78 1.34 -153.70 -0.21 -0.99 16 25 C -0.13 -1.20 9.06 37.16 0.34 -0.86 16 26 C -0.14 -1.96 8.30 37.15 0.31 -1.65 16 27 H 0.07 1.40 6.20 -51.93 -0.32 1.07 16 28 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 29 H 0.05 1.03 6.88 -51.92 -0.36 0.67 16 30 H 0.39 9.80 5.67 -40.82 -0.23 9.57 16 31 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 34 H 0.07 1.17 8.14 -51.92 -0.42 0.75 16 35 H 0.06 0.78 6.81 -51.93 -0.35 0.43 16 36 H 0.07 0.93 7.85 -51.93 -0.41 0.53 16 37 H 0.08 0.75 7.65 -51.93 -0.40 0.36 16 38 H 0.09 1.28 7.06 -51.93 -0.37 0.91 16 39 H 0.06 0.64 8.10 -51.93 -0.42 0.22 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.54 8.11 -51.93 -0.42 0.12 16 42 H 0.06 0.47 7.34 -51.93 -0.38 0.09 16 43 H 0.06 0.97 7.29 -51.93 -0.38 0.59 16 44 H 0.06 0.70 8.09 -51.92 -0.42 0.28 16 45 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 LS Contribution 346.33 15.07 5.22 5.22 Total: -1.00 -29.32 346.33 -8.32 -37.64 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: -7.72 Total: 9.82 kcal Atomic # 6 Polarization: -4.53 SS G_CDS: -0.86 Total: -5.39 kcal Atomic # 7 Polarization: -53.70 SS G_CDS: -0.01 Total: -53.71 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: 0.08 Total: -10.26 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.32 -8.32 -37.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074816207.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.169 kcal (2) G-P(sol) polarization free energy of solvation -29.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds