Wall clock time and date at job start Tue Mar 31 2020 02:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.99812 * 2 1 4 4 C 1.54327 * 109.87801 * 121.08993 * 2 1 3 5 5 H 1.09002 * 110.72159 * 260.15134 * 4 2 1 6 6 N 1.46495 * 110.72152 * 23.25039 * 4 2 1 7 7 C 1.36933 * 120.00078 * 204.99526 * 6 4 2 8 8 H 1.07996 * 120.00366 * 359.97438 * 7 6 4 9 9 C 1.38815 * 120.00166 * 179.97438 * 7 6 4 10 10 N 1.31625 * 119.99823 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 120.00362 * 179.97438 * 9 7 6 12 12 H 1.48507 * 109.46792 * 0.02562 * 11 9 7 13 13 H 1.48498 * 109.47053 * 119.99955 * 11 9 7 14 14 H 1.48496 * 109.47769 * 240.00412 * 11 9 7 15 15 C 1.55163 * 102.93886 * 141.61296 * 4 2 1 16 16 C 1.55133 * 101.48573 * 324.33527 * 15 4 2 17 17 N 1.47021 * 109.88602 * 238.90193 * 2 1 3 18 18 C 1.34768 * 125.64885 * 61.60488 * 17 2 1 19 19 O 1.21286 * 120.00230 * 0.02562 * 18 17 2 20 20 C 1.50705 * 119.99964 * 180.27588 * 18 17 2 21 21 H 1.08993 * 112.85232 * 334.68298 * 20 18 17 22 22 C 1.53784 * 113.61384 * 203.48018 * 20 18 17 23 23 C 1.53781 * 87.08278 * 270.88363 * 22 20 18 24 24 C 1.53780 * 87.08252 * 334.57085 * 23 22 20 25 25 C 1.52998 * 113.61029 * 270.88291 * 24 23 22 26 26 C 1.52995 * 113.61628 * 139.97952 * 24 23 22 27 27 H 1.08999 * 109.47265 * 179.64183 * 1 2 3 28 28 H 1.08999 * 109.47559 * 299.64518 * 1 2 3 29 29 H 1.09008 * 109.46860 * 59.64570 * 1 2 3 30 30 H 0.97003 * 120.00251 * 25.00071 * 6 4 2 31 31 H 0.96995 * 119.99900 * 180.02562 * 10 9 7 32 32 H 1.08997 * 111.00360 * 82.57586 * 15 4 2 33 33 H 1.08996 * 111.00230 * 206.38967 * 15 4 2 34 34 H 1.09010 * 110.49245 * 278.45454 * 16 15 4 35 35 H 1.08997 * 110.33855 * 156.06390 * 16 15 4 36 36 H 1.08997 * 113.61164 * 25.44086 * 22 20 18 37 37 H 1.09003 * 113.61188 * 156.33580 * 22 20 18 38 38 H 1.09002 * 113.61035 * 89.11990 * 23 22 20 39 39 H 1.08994 * 113.61519 * 220.01847 * 23 22 20 40 40 H 1.09001 * 109.47142 * 157.49814 * 25 24 23 41 41 H 1.09002 * 109.47223 * 277.49668 * 25 24 23 42 42 H 1.09000 * 109.47477 * 37.49843 * 25 24 23 43 43 H 1.09003 * 109.47016 * 327.60966 * 26 24 23 44 44 H 1.09007 * 109.47057 * 87.60007 * 26 24 23 45 45 H 1.08990 * 109.47572 * 207.60574 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0547 -0.7494 1.2428 5 1 2.3499 -0.0459 2.0214 6 7 1.0471 -1.6854 1.7476 7 6 1.0605 -2.0616 3.0641 8 1 1.8142 -1.6686 3.7304 9 6 0.1053 -2.9480 3.5425 10 7 -0.8129 -3.4274 2.7304 11 14 0.1241 -3.4618 5.3383 12 1 1.2492 -2.7873 6.0344 13 1 -1.1581 -3.0719 5.9781 14 1 0.2957 -4.9339 5.4304 15 6 3.2876 -1.5142 0.6926 16 6 2.8099 -1.8825 -0.7367 17 7 2.0301 -0.7141 -1.1838 18 6 1.8075 -0.3622 -2.4656 19 8 1.1437 0.6210 -2.7180 20 6 2.3788 -1.1935 -3.5853 21 1 3.2675 -1.7502 -3.2883 22 6 2.5489 -0.4187 -4.9028 23 6 1.1122 -0.8452 -5.2477 24 6 1.3293 -2.0485 -4.3150 25 6 1.9182 -3.2719 -5.0201 26 6 0.1090 -2.3861 -3.4561 27 1 -0.3634 -1.0276 -0.0064 28 1 -0.3634 0.5083 0.8931 29 1 -0.3633 0.5194 -0.8869 30 1 0.3703 -2.0387 1.1491 31 1 -1.4806 -4.0465 3.0648 32 1 4.1654 -0.8688 0.6607 33 1 3.4855 -2.4106 1.2802 34 1 2.1801 -2.7719 -0.7113 35 1 3.6656 -2.0412 -1.3929 36 1 2.6642 0.6564 -4.7653 37 1 3.3019 -0.8448 -5.5658 38 1 0.3528 -0.1487 -4.8924 39 1 0.9780 -1.1219 -6.2934 40 1 2.4075 -3.9132 -4.2870 41 1 1.1197 -3.8268 -5.5127 42 1 2.6470 -2.9475 -5.7629 43 1 -0.4335 -1.4707 -3.2199 44 1 -0.5447 -3.0646 -4.0043 45 1 0.4358 -2.8634 -2.5323 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074816207.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:20:40 Heat of formation + Delta-G solvation = -21.025436 kcal Electronic energy + Delta-G solvation = -23648.511831 eV Core-core repulsion = 20473.077463 eV Total energy + Delta-G solvation = -3175.434368 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.01120 -40.11186 -38.10386 -35.73445 -33.36537 -32.26800 -31.62245 -30.70231 -28.39054 -27.42413 -26.75424 -25.44870 -23.95146 -23.22659 -21.46793 -20.28233 -19.41887 -18.70045 -18.04962 -17.28310 -16.47986 -16.22990 -15.88693 -15.76987 -15.30886 -15.10642 -14.75372 -14.65305 -14.33743 -13.96945 -13.88641 -13.73725 -13.23752 -13.11666 -12.99793 -12.94930 -12.88974 -12.53561 -12.42437 -12.39323 -12.25726 -12.06707 -12.00215 -11.82957 -11.65916 -11.46130 -11.05702 -11.00615 -10.91019 -10.56177 -9.60447 -8.99214 -7.91946 -5.19942 1.49301 1.50496 1.59610 1.61576 2.03383 2.57899 3.37770 3.45625 3.48550 3.64232 3.76864 3.86121 3.88530 3.94448 4.13465 4.26078 4.27238 4.29523 4.40216 4.53426 4.57808 4.67529 4.69135 4.75814 4.80476 4.82633 4.87936 4.95853 5.00378 5.05426 5.06426 5.11918 5.18298 5.21745 5.29764 5.32982 5.37381 5.41631 5.46673 5.57679 5.62744 6.29600 6.64655 7.23591 7.37014 8.10604 8.34570 9.31688 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.026038 B = 0.004620 C = 0.004420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.081151 B = 6058.892203 C = 6333.382431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.131 3.869 3 H 0.077 0.923 4 C 0.163 3.837 5 H 0.073 0.927 6 N -0.723 5.723 7 C -0.234 4.234 8 H 0.081 0.919 9 C -0.072 4.072 10 N -0.970 5.970 11 Si 0.968 3.032 12 H -0.264 1.264 13 H -0.300 1.300 14 H -0.296 1.296 15 C -0.146 4.146 16 C 0.110 3.890 17 N -0.605 5.605 18 C 0.544 3.456 19 O -0.580 6.580 20 C -0.134 4.134 21 H 0.113 0.887 22 C -0.108 4.108 23 C -0.131 4.131 24 C -0.061 4.061 25 C -0.122 4.122 26 C -0.139 4.139 27 H 0.040 0.960 28 H 0.055 0.945 29 H 0.047 0.953 30 H 0.376 0.624 31 H 0.249 0.751 32 H 0.092 0.908 33 H 0.075 0.925 34 H 0.051 0.949 35 H 0.102 0.898 36 H 0.058 0.942 37 H 0.119 0.881 38 H 0.060 0.940 39 H 0.087 0.913 40 H 0.063 0.937 41 H 0.067 0.933 42 H 0.079 0.921 43 H 0.030 0.970 44 H 0.069 0.931 45 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.572 2.026 -15.510 18.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.026 3.974 3 H 0.095 0.905 4 C 0.053 3.947 5 H 0.091 0.909 6 N -0.365 5.365 7 C -0.365 4.365 8 H 0.099 0.901 9 C -0.264 4.264 10 N -0.621 5.621 11 Si 0.798 3.202 12 H -0.188 1.188 13 H -0.228 1.228 14 H -0.224 1.224 15 C -0.187 4.187 16 C -0.012 4.012 17 N -0.338 5.338 18 C 0.334 3.666 19 O -0.460 6.460 20 C -0.155 4.155 21 H 0.131 0.869 22 C -0.146 4.146 23 C -0.168 4.168 24 C -0.062 4.062 25 C -0.179 4.179 26 C -0.197 4.197 27 H 0.059 0.941 28 H 0.074 0.926 29 H 0.066 0.934 30 H 0.211 0.789 31 H 0.057 0.943 32 H 0.110 0.890 33 H 0.094 0.906 34 H 0.069 0.931 35 H 0.120 0.880 36 H 0.077 0.923 37 H 0.137 0.863 38 H 0.078 0.922 39 H 0.106 0.894 40 H 0.082 0.918 41 H 0.086 0.914 42 H 0.098 0.902 43 H 0.050 0.950 44 H 0.088 0.912 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 10.267 2.560 -15.514 18.779 hybrid contribution -1.000 -0.445 1.270 1.676 sum 9.267 2.116 -14.244 17.124 Atomic orbital electron populations 1.21721 0.95916 1.00813 1.00651 1.21823 0.93985 0.96119 0.85449 0.90472 1.21416 0.89359 0.91329 0.92635 0.90942 1.42671 1.33632 1.52148 1.07999 1.19677 1.09835 1.19670 0.87357 0.90144 1.25465 0.98275 1.01207 1.01489 1.69830 1.19555 1.36939 1.35777 0.85142 0.77121 0.77227 0.80670 1.18822 1.22770 1.22360 1.23402 0.98598 1.01757 0.94962 1.22363 0.95075 0.87438 0.96304 1.48666 1.52134 1.28345 1.04665 1.20243 0.79384 0.84534 0.82437 1.90622 1.41755 1.29869 1.83770 1.22661 1.00842 0.98623 0.93375 0.86946 1.22738 0.97996 0.99722 0.94141 1.23037 0.97332 0.96489 0.99940 1.21750 0.93627 0.95448 0.95372 1.21605 1.01298 0.94735 1.00243 1.21770 0.97857 1.00609 0.99429 0.94149 0.92564 0.93424 0.78946 0.94259 0.88990 0.90641 0.93058 0.88008 0.92290 0.86329 0.92151 0.89447 0.91781 0.91366 0.90217 0.95046 0.91160 0.93859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.33 8.51 71.98 0.61 -4.72 16 2 C 0.13 4.63 3.43 45.34 0.16 4.79 16 3 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 4 C 0.16 6.03 3.48 46.18 0.16 6.19 16 5 H 0.07 2.64 8.09 -2.39 -0.02 2.62 16 6 N -0.72 -34.33 4.54 -317.32 -1.44 -35.77 16 7 C -0.23 -12.27 9.96 84.03 0.84 -11.43 16 8 H 0.08 4.01 7.83 -2.91 -0.02 3.99 16 9 C -0.07 -4.01 5.50 84.86 0.47 -3.54 16 10 N -0.97 -58.30 13.06 21.65 0.28 -58.01 16 11 Si 0.97 45.07 29.55 68.60 2.03 47.10 16 12 H -0.26 -11.42 7.11 99.48 0.71 -10.72 16 13 H -0.30 -14.24 7.11 99.48 0.71 -13.54 16 14 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 15 C -0.15 -4.38 6.78 32.07 0.22 -4.16 16 16 C 0.11 3.10 6.64 86.93 0.58 3.68 16 17 N -0.61 -19.24 3.06 -787.61 -2.41 -21.66 16 18 C 0.54 17.26 5.48 87.66 0.48 17.74 16 19 O -0.58 -22.29 14.18 -3.05 -0.04 -22.33 16 20 C -0.13 -3.10 3.42 -11.01 -0.04 -3.14 16 21 H 0.11 2.11 6.57 -2.39 -0.02 2.09 16 22 C -0.11 -2.14 7.08 31.12 0.22 -1.92 16 23 C -0.13 -2.85 6.78 31.12 0.21 -2.64 16 24 C -0.06 -1.33 1.34 -51.66 -0.07 -1.40 16 25 C -0.12 -1.86 9.06 71.98 0.65 -1.20 16 26 C -0.14 -3.87 8.30 71.98 0.60 -3.27 16 27 H 0.04 1.81 6.20 -2.39 -0.01 1.80 16 28 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 29 H 0.05 1.93 6.88 -2.38 -0.02 1.91 16 30 H 0.38 19.69 5.67 -92.71 -0.53 19.16 16 31 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 32 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 33 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 34 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 35 H 0.10 2.12 6.81 -2.39 -0.02 2.10 16 36 H 0.06 1.37 7.85 -2.39 -0.02 1.35 16 37 H 0.12 1.55 7.65 -2.39 -0.02 1.53 16 38 H 0.06 1.71 7.06 -2.39 -0.02 1.69 16 39 H 0.09 1.49 8.10 -2.39 -0.02 1.47 16 40 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.07 0.98 8.11 -2.39 -0.02 0.96 16 42 H 0.08 0.90 7.34 -2.39 -0.02 0.88 16 43 H 0.03 1.03 7.29 -2.39 -0.02 1.01 16 44 H 0.07 1.71 8.09 -2.38 -0.02 1.69 16 45 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -65.49 346.33 3.93 -61.56 By element: Atomic # 1 Polarization: 33.70 SS G_CDS: 0.44 Total: 34.13 kcal Atomic # 6 Polarization: -10.10 SS G_CDS: 5.08 Total: -5.02 kcal Atomic # 7 Polarization: -111.87 SS G_CDS: -3.57 Total: -115.44 kcal Atomic # 8 Polarization: -22.29 SS G_CDS: -0.04 Total: -22.33 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -65.49 3.93 -61.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074816207.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.535 kcal (2) G-P(sol) polarization free energy of solvation -65.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds