Wall clock time and date at job start Tue Mar 31 2020 02:38:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09010 * 109.46955 * 2 1 4 4 C 1.50700 * 109.47302 * 120.00124 * 2 1 3 5 5 O 1.21281 * 119.99755 * 120.00271 * 4 2 1 6 6 N 1.34776 * 119.99958 * 299.99789 * 4 2 1 7 7 C 1.46495 * 120.00152 * 179.97438 * 6 4 2 8 8 H 1.09002 * 110.63945 * 31.86229 * 7 6 4 9 9 C 1.54336 * 110.85361 * 268.69951 * 7 6 4 10 10 N 1.47020 * 107.26596 * 219.67162 * 9 7 6 11 11 C 1.36929 * 125.65004 * 178.84697 * 10 9 7 12 12 H 1.08003 * 120.00304 * 176.14409 * 11 10 9 13 13 C 1.38816 * 120.00114 * 356.14244 * 11 10 9 14 14 N 1.31616 * 120.00386 * 211.26927 * 13 11 10 15 15 Si 1.86799 * 119.99639 * 31.26718 * 13 11 10 16 16 H 1.48502 * 109.47496 * 275.30623 * 15 13 11 17 17 H 1.48502 * 109.47344 * 35.30445 * 15 13 11 18 18 H 1.48502 * 109.47320 * 155.30680 * 15 13 11 19 19 C 1.47429 * 108.70246 * 358.58344 * 10 9 7 20 20 C 1.54909 * 104.83114 * 24.35506 * 19 10 9 21 21 H 1.09002 * 111.00252 * 81.10670 * 20 19 10 22 22 C 1.53002 * 111.00270 * 204.91537 * 20 19 10 23 23 C 1.52994 * 109.47059 * 240.00357 * 2 1 3 24 24 C 1.53782 * 113.61669 * 157.49624 * 23 2 1 25 25 C 1.53784 * 87.08268 * 220.02063 * 24 23 2 26 26 C 1.53776 * 87.08274 * 25.42856 * 25 24 23 27 27 H 1.08998 * 109.47172 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.46977 * 299.99679 * 1 2 3 29 29 H 1.09003 * 109.47477 * 59.99655 * 1 2 3 30 30 H 0.97007 * 120.00172 * 0.02562 * 6 4 2 31 31 H 1.08997 * 109.99181 * 100.19370 * 9 7 6 32 32 H 1.09005 * 109.77152 * 339.02495 * 9 7 6 33 33 H 0.96998 * 119.99890 * 354.97283 * 14 13 11 34 34 H 1.08999 * 110.36759 * 143.19952 * 19 10 9 35 35 H 1.09002 * 110.36426 * 265.40555 * 19 10 9 36 36 H 1.09004 * 109.47112 * 58.55222 * 22 20 19 37 37 H 1.09000 * 109.47259 * 178.54501 * 22 20 19 38 38 H 1.08994 * 109.47487 * 298.54968 * 22 20 19 39 39 H 1.09004 * 112.85029 * 288.80450 * 23 2 1 40 40 H 1.09003 * 113.61119 * 334.56554 * 24 23 2 41 41 H 1.09000 * 113.61543 * 105.46665 * 24 23 2 42 42 H 1.09003 * 113.61211 * 270.88385 * 25 24 23 43 43 H 1.08996 * 113.61660 * 139.98307 * 25 24 23 44 44 H 1.09001 * 113.61848 * 220.02237 * 26 25 24 45 45 H 1.09004 * 113.61396 * 89.11966 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7297 -1.6965 1.1191 6 7 1.7068 -0.2500 2.4545 7 6 2.1947 -0.9409 3.6507 8 1 3.1707 -1.3891 3.4643 9 6 1.1846 -2.0101 4.1179 10 7 1.1479 -1.9634 5.5869 11 6 0.3578 -2.7410 6.3907 12 1 0.4491 -2.6746 7.4648 13 6 -0.5607 -3.6146 5.8250 14 7 -1.6837 -3.8877 6.4549 15 14 -0.2030 -4.4027 4.1696 16 1 -0.6159 -3.4796 3.0821 17 1 1.2515 -4.6803 4.0575 18 1 -0.9601 -5.6749 4.0530 19 6 2.1075 -0.9451 6.0516 20 6 2.2587 0.0311 4.8583 21 1 1.4350 0.7445 4.8305 22 6 3.6057 0.7548 4.9092 23 6 2.0400 -0.7211 -1.2492 24 6 3.4726 -0.3276 -1.6461 25 6 2.9921 -0.3570 -3.1067 26 6 1.5810 -0.0722 -2.5658 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8900 30 1 1.1488 0.5385 2.5436 31 1 1.5067 -2.9972 3.7863 32 1 0.1970 -1.7854 3.7151 33 1 -1.8375 -3.5368 7.3460 34 1 1.7131 -0.4216 6.9225 35 1 3.0656 -1.4073 6.2895 36 1 4.4127 0.0222 4.8928 37 1 3.6965 1.4145 4.0463 38 1 3.6678 1.3432 5.8245 39 1 1.8758 -1.7981 -1.2130 40 1 3.7638 0.6650 -1.3023 41 1 4.2151 -1.0914 -1.4152 42 1 3.0895 -1.3347 -3.5787 43 1 3.3974 0.4506 -3.7161 44 1 0.7965 -0.6299 -3.0772 45 1 1.3551 0.9902 -2.4734 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001079941577.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:38:45 Heat of formation + Delta-G solvation = -2.669123 kcal Electronic energy + Delta-G solvation = -23073.626192 eV Core-core repulsion = 19898.987813 eV Total energy + Delta-G solvation = -3174.638378 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.28247 -38.77357 -37.50522 -34.11300 -33.19196 -32.32938 -30.98218 -27.96770 -26.28563 -26.02532 -25.34951 -23.85026 -22.46559 -20.69836 -20.36603 -19.66145 -19.33722 -17.40813 -16.97767 -16.38074 -15.43228 -15.21620 -15.12350 -14.68960 -14.09123 -13.80342 -13.28027 -13.15264 -13.05890 -12.90919 -12.70866 -12.63804 -12.52959 -12.23297 -11.96421 -11.69960 -11.66191 -11.30754 -11.10386 -10.97854 -10.66857 -10.64089 -10.48009 -10.40700 -10.23434 -10.07231 -9.68864 -9.44403 -9.28864 -8.67214 -8.31341 -7.04572 -6.35950 -3.10787 2.83744 3.33940 3.48400 3.58437 3.72811 4.42240 4.50659 4.53954 4.62630 4.73436 4.81054 4.94272 4.98142 5.06038 5.23833 5.25539 5.31551 5.36318 5.51270 5.55659 5.57790 5.61874 5.69855 5.75984 5.76148 5.78083 5.85137 5.91348 5.96419 5.99309 6.08710 6.14918 6.17580 6.27972 6.41686 6.48159 6.50405 6.59495 6.78656 6.92753 7.69702 7.74722 8.35047 8.44735 9.06162 9.63543 10.29607 11.15553 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.018885 B = 0.005201 C = 0.004445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.323683 B = 5382.163426 C = 6298.354779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.100 4.100 3 H 0.094 0.906 4 C 0.515 3.485 5 O -0.537 6.537 6 N -0.718 5.718 7 C 0.138 3.862 8 H 0.096 0.904 9 C 0.098 3.902 10 N -0.609 5.609 11 C -0.338 4.338 12 H 0.080 0.920 13 C -0.016 4.016 14 N -0.912 5.912 15 Si 1.062 2.938 16 H -0.294 1.294 17 H -0.292 1.292 18 H -0.299 1.299 19 C 0.144 3.856 20 C -0.113 4.113 21 H 0.081 0.919 22 C -0.136 4.136 23 C -0.089 4.089 24 C -0.133 4.133 25 C -0.143 4.143 26 C -0.136 4.136 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.398 0.602 31 H 0.039 0.961 32 H 0.045 0.955 33 H 0.263 0.737 34 H 0.048 0.952 35 H 0.023 0.977 36 H 0.055 0.945 37 H 0.051 0.949 38 H 0.056 0.944 39 H 0.098 0.902 40 H 0.076 0.924 41 H 0.069 0.931 42 H 0.078 0.922 43 H 0.064 0.936 44 H 0.066 0.934 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.135 13.339 -15.422 21.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.122 4.122 3 H 0.112 0.888 4 C 0.301 3.699 5 O -0.414 6.414 6 N -0.369 5.369 7 C 0.033 3.967 8 H 0.114 0.886 9 C -0.028 4.028 10 N -0.337 5.337 11 C -0.464 4.464 12 H 0.098 0.902 13 C -0.217 4.217 14 N -0.553 5.553 15 Si 0.896 3.104 16 H -0.222 1.222 17 H -0.219 1.219 18 H -0.227 1.227 19 C 0.017 3.983 20 C -0.132 4.132 21 H 0.099 0.901 22 C -0.194 4.194 23 C -0.108 4.108 24 C -0.170 4.170 25 C -0.180 4.180 26 C -0.173 4.173 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.232 0.768 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.041 0.959 36 H 0.075 0.925 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.117 0.883 40 H 0.094 0.906 41 H 0.088 0.912 42 H 0.097 0.903 43 H 0.083 0.917 44 H 0.085 0.915 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 7.943 11.559 -16.575 21.712 hybrid contribution 0.409 1.270 1.324 1.880 sum 8.352 12.829 -15.251 21.608 Atomic orbital electron populations 1.21769 0.92801 1.03210 1.02480 1.21353 0.97548 1.00251 0.93022 0.88795 1.20643 0.80037 0.84630 0.84564 1.90689 1.37893 1.26041 1.86736 1.46013 1.53547 1.31732 1.05563 1.22054 0.98295 0.93093 0.83217 0.88617 1.22104 0.97317 0.96932 0.86424 1.44763 1.46636 1.42416 0.99900 1.19965 1.15472 1.20770 0.90222 0.90212 1.25588 0.91967 0.98590 1.05547 1.70924 1.18632 1.51410 1.14315 0.83920 0.74606 0.76335 0.75586 1.22225 1.21949 1.22707 1.21557 0.92942 0.89338 0.94467 1.22629 0.97933 0.96918 0.95765 0.90084 1.21682 0.96437 1.00050 1.01254 1.22372 0.96146 1.00591 0.91663 1.22902 0.96945 1.01562 0.95623 1.22802 0.96857 1.01728 0.96662 1.22962 0.97021 1.00826 0.96504 0.91804 0.92042 0.91412 0.76767 0.94321 0.93757 0.92636 0.93357 0.95895 0.92546 0.92983 0.92463 0.88331 0.90565 0.91196 0.90294 0.91713 0.91487 0.90179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 8.89 37.16 0.33 -1.14 16 2 C -0.10 -1.10 2.48 -91.78 -0.23 -1.33 16 3 H 0.09 0.83 7.94 -51.92 -0.41 0.42 16 4 C 0.52 7.85 7.15 -10.99 -0.08 7.77 16 5 O -0.54 -10.34 15.49 5.56 0.09 -10.25 16 6 N -0.72 -10.59 5.00 -52.03 -0.26 -10.85 16 7 C 0.14 2.48 2.78 -66.10 -0.18 2.30 16 8 H 0.10 1.82 7.42 -51.93 -0.39 1.43 16 9 C 0.10 2.28 4.59 -3.06 -0.01 2.27 16 10 N -0.61 -15.38 3.38 -170.06 -0.57 -15.96 16 11 C -0.34 -9.89 10.42 -15.06 -0.16 -10.05 16 12 H 0.08 2.43 8.06 -52.48 -0.42 2.00 16 13 C -0.02 -0.48 5.45 -17.43 -0.09 -0.57 16 14 N -0.91 -28.97 13.70 55.49 0.76 -28.21 16 15 Si 1.06 28.46 24.66 -169.99 -4.19 24.27 16 16 H -0.29 -7.57 6.37 56.52 0.36 -7.21 16 17 H -0.29 -7.69 6.35 56.52 0.36 -7.33 16 18 H -0.30 -8.01 7.11 56.52 0.40 -7.61 16 19 C 0.14 2.88 6.70 -2.53 -0.02 2.86 16 20 C -0.11 -1.78 3.27 -88.47 -0.29 -2.07 16 21 H 0.08 1.22 8.01 -51.93 -0.42 0.80 16 22 C -0.14 -1.70 9.29 37.16 0.35 -1.36 16 23 C -0.09 -0.98 2.54 -89.81 -0.23 -1.21 16 24 C -0.13 -1.37 7.60 -25.92 -0.20 -1.56 16 25 C -0.14 -1.22 8.08 -25.92 -0.21 -1.43 16 26 C -0.14 -1.15 6.68 -25.92 -0.17 -1.32 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.06 0.58 7.56 -51.92 -0.39 0.19 16 29 H 0.07 0.54 7.45 -51.93 -0.39 0.16 16 30 H 0.40 4.70 7.98 -40.82 -0.33 4.38 16 31 H 0.04 1.00 4.45 -51.93 -0.23 0.77 16 32 H 0.04 1.09 6.58 -51.93 -0.34 0.75 16 33 H 0.26 8.21 8.73 -40.82 -0.36 7.85 16 34 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.02 0.46 8.04 -51.93 -0.42 0.04 16 36 H 0.06 0.72 8.11 -51.93 -0.42 0.30 16 37 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.10 1.30 7.86 -51.93 -0.41 0.89 16 40 H 0.08 0.72 7.96 -51.93 -0.41 0.30 16 41 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 45 H 0.08 0.59 8.10 -51.93 -0.42 0.17 16 LS Contribution 347.36 15.07 5.23 5.23 Total: -1.00 -34.07 347.36 -8.15 -42.22 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -8.01 Total: 0.38 kcal Atomic # 6 Polarization: -5.65 SS G_CDS: -1.19 Total: -6.84 kcal Atomic # 7 Polarization: -54.94 SS G_CDS: -0.07 Total: -55.01 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: 0.09 Total: -10.25 kcal Atomic # 14 Polarization: 28.46 SS G_CDS: -4.19 Total: 24.27 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -34.07 -8.15 -42.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079941577.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.555 kcal (2) G-P(sol) polarization free energy of solvation -34.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds