Wall clock time and date at job start Tue Mar 31 2020 02:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09010 * 109.46955 * 2 1 4 4 C 1.50700 * 109.47302 * 120.00124 * 2 1 3 5 5 O 1.21281 * 119.99755 * 120.00271 * 4 2 1 6 6 N 1.34776 * 119.99958 * 299.99789 * 4 2 1 7 7 C 1.46495 * 120.00152 * 179.97438 * 6 4 2 8 8 H 1.09002 * 110.63945 * 31.86229 * 7 6 4 9 9 C 1.54336 * 110.85361 * 268.69951 * 7 6 4 10 10 N 1.47020 * 107.26596 * 219.67162 * 9 7 6 11 11 C 1.36929 * 125.65004 * 178.84697 * 10 9 7 12 12 H 1.08003 * 120.00304 * 176.14409 * 11 10 9 13 13 C 1.38816 * 120.00114 * 356.14244 * 11 10 9 14 14 N 1.31616 * 120.00386 * 211.26927 * 13 11 10 15 15 Si 1.86799 * 119.99639 * 31.26718 * 13 11 10 16 16 H 1.48502 * 109.47496 * 275.30623 * 15 13 11 17 17 H 1.48502 * 109.47344 * 35.30445 * 15 13 11 18 18 H 1.48502 * 109.47320 * 155.30680 * 15 13 11 19 19 C 1.47429 * 108.70246 * 358.58344 * 10 9 7 20 20 C 1.54909 * 104.83114 * 24.35506 * 19 10 9 21 21 H 1.09002 * 111.00252 * 81.10670 * 20 19 10 22 22 C 1.53002 * 111.00270 * 204.91537 * 20 19 10 23 23 C 1.52994 * 109.47059 * 240.00357 * 2 1 3 24 24 C 1.53782 * 113.61669 * 157.49624 * 23 2 1 25 25 C 1.53784 * 87.08268 * 220.02063 * 24 23 2 26 26 C 1.53776 * 87.08274 * 25.42856 * 25 24 23 27 27 H 1.08998 * 109.47172 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.46977 * 299.99679 * 1 2 3 29 29 H 1.09003 * 109.47477 * 59.99655 * 1 2 3 30 30 H 0.97007 * 120.00172 * 0.02562 * 6 4 2 31 31 H 1.08997 * 109.99181 * 100.19370 * 9 7 6 32 32 H 1.09005 * 109.77152 * 339.02495 * 9 7 6 33 33 H 0.96998 * 119.99890 * 354.97283 * 14 13 11 34 34 H 1.08999 * 110.36759 * 143.19952 * 19 10 9 35 35 H 1.09002 * 110.36426 * 265.40555 * 19 10 9 36 36 H 1.09004 * 109.47112 * 58.55222 * 22 20 19 37 37 H 1.09000 * 109.47259 * 178.54501 * 22 20 19 38 38 H 1.08994 * 109.47487 * 298.54968 * 22 20 19 39 39 H 1.09004 * 112.85029 * 288.80450 * 23 2 1 40 40 H 1.09003 * 113.61119 * 334.56554 * 24 23 2 41 41 H 1.09000 * 113.61543 * 105.46665 * 24 23 2 42 42 H 1.09003 * 113.61211 * 270.88385 * 25 24 23 43 43 H 1.08996 * 113.61660 * 139.98307 * 25 24 23 44 44 H 1.09001 * 113.61848 * 220.02237 * 26 25 24 45 45 H 1.09004 * 113.61396 * 89.11966 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7297 -1.6965 1.1191 6 7 1.7068 -0.2500 2.4545 7 6 2.1947 -0.9409 3.6507 8 1 3.1707 -1.3891 3.4643 9 6 1.1846 -2.0101 4.1179 10 7 1.1479 -1.9634 5.5869 11 6 0.3578 -2.7410 6.3907 12 1 0.4491 -2.6746 7.4648 13 6 -0.5607 -3.6146 5.8250 14 7 -1.6837 -3.8877 6.4549 15 14 -0.2030 -4.4027 4.1696 16 1 -0.6159 -3.4796 3.0821 17 1 1.2515 -4.6803 4.0575 18 1 -0.9601 -5.6749 4.0530 19 6 2.1075 -0.9451 6.0516 20 6 2.2587 0.0311 4.8583 21 1 1.4350 0.7445 4.8305 22 6 3.6057 0.7548 4.9092 23 6 2.0400 -0.7211 -1.2492 24 6 3.4726 -0.3276 -1.6461 25 6 2.9921 -0.3570 -3.1067 26 6 1.5810 -0.0722 -2.5658 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8900 30 1 1.1488 0.5385 2.5436 31 1 1.5067 -2.9972 3.7863 32 1 0.1970 -1.7854 3.7151 33 1 -1.8375 -3.5368 7.3460 34 1 1.7131 -0.4216 6.9225 35 1 3.0656 -1.4073 6.2895 36 1 4.4127 0.0222 4.8928 37 1 3.6965 1.4145 4.0463 38 1 3.6678 1.3432 5.8245 39 1 1.8758 -1.7981 -1.2130 40 1 3.7638 0.6650 -1.3023 41 1 4.2151 -1.0914 -1.4152 42 1 3.0895 -1.3347 -3.5787 43 1 3.3974 0.4506 -3.7161 44 1 0.7965 -0.6299 -3.0772 45 1 1.3551 0.9902 -2.4734 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001079941577.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:38:44 Heat of formation + Delta-G solvation = -25.942759 kcal Electronic energy + Delta-G solvation = -23074.635412 eV Core-core repulsion = 19898.987813 eV Total energy + Delta-G solvation = -3175.647599 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.43178 -39.96769 -38.80884 -35.76894 -34.65870 -33.55460 -32.76590 -29.61696 -27.66545 -27.06479 -26.09170 -25.31478 -23.79069 -22.45760 -21.74670 -20.78036 -20.22599 -19.59856 -18.10623 -17.76636 -16.97063 -16.44827 -16.13109 -15.98832 -15.59677 -15.24703 -15.01218 -14.89128 -14.34483 -14.16008 -13.88555 -13.61248 -13.46061 -13.35252 -13.19460 -13.03829 -13.01291 -12.53790 -12.46676 -12.22265 -12.13037 -12.04774 -11.90316 -11.63583 -11.39050 -11.28487 -11.21281 -10.99049 -10.68121 -10.61474 -10.05352 -9.19260 -8.74820 -5.41836 1.29455 1.38705 1.55939 1.64801 2.13870 2.38307 2.92785 3.32250 3.51342 3.60213 3.72889 3.75883 3.79868 3.98352 4.00176 4.05924 4.23906 4.32465 4.41814 4.43941 4.49519 4.56285 4.68630 4.78082 4.82051 4.88490 4.90540 4.91962 4.95127 4.98527 5.02833 5.06351 5.13372 5.19273 5.20102 5.31897 5.36933 5.43902 5.51688 5.55692 5.66906 6.05196 6.57451 6.77070 7.27761 7.43987 8.08571 8.78435 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.018885 B = 0.005201 C = 0.004445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.323683 B = 5382.163426 C = 6298.354779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.090 4.090 3 H 0.129 0.871 4 C 0.509 3.491 5 O -0.583 6.583 6 N -0.707 5.707 7 C 0.151 3.849 8 H 0.086 0.914 9 C 0.096 3.904 10 N -0.629 5.629 11 C -0.326 4.326 12 H 0.059 0.941 13 C -0.064 4.064 14 N -0.944 5.944 15 Si 1.100 2.900 16 H -0.282 1.282 17 H -0.292 1.292 18 H -0.299 1.299 19 C 0.133 3.867 20 C -0.092 4.092 21 H 0.097 0.903 22 C -0.129 4.129 23 C -0.101 4.101 24 C -0.136 4.136 25 C -0.139 4.139 26 C -0.122 4.122 27 H 0.037 0.963 28 H 0.069 0.931 29 H 0.095 0.905 30 H 0.416 0.584 31 H 0.012 0.988 32 H 0.030 0.970 33 H 0.254 0.746 34 H 0.050 0.950 35 H 0.028 0.972 36 H 0.051 0.949 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.065 0.935 40 H 0.091 0.909 41 H 0.044 0.956 42 H 0.072 0.928 43 H 0.082 0.918 44 H 0.069 0.931 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.967 16.671 -17.452 25.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.111 4.111 3 H 0.147 0.853 4 C 0.297 3.703 5 O -0.462 6.462 6 N -0.359 5.359 7 C 0.045 3.955 8 H 0.104 0.896 9 C -0.030 4.030 10 N -0.357 5.357 11 C -0.454 4.454 12 H 0.077 0.923 13 C -0.260 4.260 14 N -0.587 5.587 15 Si 0.930 3.070 16 H -0.209 1.209 17 H -0.220 1.220 18 H -0.227 1.227 19 C 0.008 3.992 20 C -0.111 4.111 21 H 0.115 0.885 22 C -0.186 4.186 23 C -0.120 4.120 24 C -0.174 4.174 25 C -0.176 4.176 26 C -0.159 4.159 27 H 0.056 0.944 28 H 0.088 0.912 29 H 0.114 0.886 30 H 0.253 0.747 31 H 0.029 0.971 32 H 0.048 0.952 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.046 0.954 36 H 0.070 0.930 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.083 0.917 40 H 0.110 0.890 41 H 0.063 0.937 42 H 0.091 0.909 43 H 0.101 0.899 44 H 0.088 0.912 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 8.789 14.952 -18.612 25.440 hybrid contribution 0.218 0.228 2.045 2.069 sum 9.006 15.180 -16.567 24.208 Atomic orbital electron populations 1.21803 0.91905 1.02104 1.04343 1.21412 0.98045 1.01243 0.90359 0.85296 1.21535 0.78998 0.84094 0.85637 1.90677 1.39974 1.28190 1.87371 1.45891 1.53592 1.31883 1.04547 1.21730 0.96044 0.92540 0.85225 0.89629 1.22130 0.98041 0.97620 0.85242 1.44888 1.47219 1.42799 1.00791 1.19957 1.15311 1.20223 0.89945 0.92279 1.26458 0.92069 0.99541 1.07936 1.70994 1.20127 1.53181 1.14434 0.83348 0.74301 0.75855 0.73457 1.20903 1.22004 1.22736 1.21852 0.91731 0.89087 0.96537 1.22548 1.00859 0.95791 0.91951 0.88479 1.21648 0.93626 1.00029 1.03328 1.22376 0.97287 0.99083 0.93233 1.22951 0.95843 1.01480 0.97104 1.22785 0.96912 1.02172 0.95732 1.22941 0.96920 1.01853 0.94185 0.94396 0.91192 0.88579 0.74677 0.97056 0.95213 0.93594 0.93152 0.95408 0.93026 0.90653 0.90604 0.91652 0.89044 0.93709 0.90887 0.89915 0.91181 0.87877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 8.89 71.98 0.64 -1.86 16 2 C -0.09 -1.72 2.48 -11.54 -0.03 -1.75 16 3 H 0.13 1.64 7.94 -2.38 -0.02 1.62 16 4 C 0.51 14.76 7.15 87.66 0.63 15.38 16 5 O -0.58 -22.52 15.49 -3.03 -0.05 -22.56 16 6 N -0.71 -19.23 5.00 -436.91 -2.18 -21.41 16 7 C 0.15 5.19 2.78 46.18 0.13 5.32 16 8 H 0.09 3.17 7.42 -2.39 -0.02 3.16 16 9 C 0.10 4.45 4.59 86.73 0.40 4.85 16 10 N -0.63 -31.85 3.38 -691.95 -2.34 -34.19 16 11 C -0.33 -19.51 10.42 84.04 0.88 -18.64 16 12 H 0.06 3.71 8.06 -2.91 -0.02 3.69 16 13 C -0.06 -3.95 5.45 84.86 0.46 -3.49 16 14 N -0.94 -61.55 13.70 21.65 0.30 -61.25 16 15 Si 1.10 59.38 24.66 68.60 1.69 61.07 16 16 H -0.28 -14.46 6.37 99.48 0.63 -13.82 16 17 H -0.29 -15.60 6.35 99.48 0.63 -14.96 16 18 H -0.30 -16.00 7.11 99.48 0.71 -15.29 16 19 C 0.13 5.17 6.70 86.85 0.58 5.75 16 20 C -0.09 -2.65 3.27 -9.40 -0.03 -2.68 16 21 H 0.10 2.54 8.01 -2.39 -0.02 2.52 16 22 C -0.13 -2.70 9.29 71.98 0.67 -2.03 16 23 C -0.10 -2.07 2.54 -10.27 -0.03 -2.09 16 24 C -0.14 -2.58 7.60 31.12 0.24 -2.34 16 25 C -0.14 -2.04 8.08 31.12 0.25 -1.79 16 26 C -0.12 -1.68 6.68 31.12 0.21 -1.47 16 27 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.07 1.09 7.56 -2.38 -0.02 1.07 16 29 H 0.10 1.14 7.45 -2.39 -0.02 1.12 16 30 H 0.42 8.34 7.98 -92.70 -0.74 7.60 16 31 H 0.01 0.62 4.45 -2.39 -0.01 0.61 16 32 H 0.03 1.47 6.58 -2.38 -0.02 1.45 16 33 H 0.25 16.43 8.73 -92.71 -0.81 15.62 16 34 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.03 1.07 8.04 -2.39 -0.02 1.05 16 36 H 0.05 1.15 8.11 -2.39 -0.02 1.13 16 37 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.06 1.77 7.86 -2.39 -0.02 1.75 16 40 H 0.09 1.43 7.96 -2.39 -0.02 1.41 16 41 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 45 H 0.10 0.99 8.10 -2.38 -0.02 0.97 16 Total: -1.00 -77.56 347.36 2.44 -75.12 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: 0.03 Total: 10.06 kcal Atomic # 6 Polarization: -11.82 SS G_CDS: 4.99 Total: -6.83 kcal Atomic # 7 Polarization: -112.63 SS G_CDS: -4.22 Total: -116.86 kcal Atomic # 8 Polarization: -22.52 SS G_CDS: -0.05 Total: -22.56 kcal Atomic # 14 Polarization: 59.38 SS G_CDS: 1.69 Total: 61.07 kcal Total: -77.56 2.44 -75.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079941577.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.178 kcal (2) G-P(sol) polarization free energy of solvation -77.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds