Wall clock time and date at job start Tue Mar 31 2020 02:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.87322 * 2 1 4 4 C 1.54327 * 109.88146 * 238.98433 * 2 1 3 5 5 H 1.08998 * 110.72118 * 336.77642 * 4 2 1 6 6 N 1.46505 * 110.71543 * 99.87384 * 4 2 1 7 7 C 1.34775 * 119.99407 * 204.99849 * 6 4 2 8 8 O 1.21286 * 120.00485 * 359.97438 * 7 6 4 9 9 C 1.50701 * 119.99841 * 180.02562 * 7 6 4 10 10 H 1.09000 * 112.85187 * 39.92827 * 9 7 6 11 11 C 1.53783 * 113.69117 * 171.20093 * 9 7 6 12 12 C 1.53780 * 87.08109 * 89.12610 * 11 9 7 13 13 C 1.53776 * 87.08170 * 25.43303 * 12 11 9 14 14 C 1.53001 * 113.61400 * 220.01798 * 13 12 11 15 15 C 1.52995 * 113.61428 * 89.11709 * 13 12 11 16 16 C 1.55158 * 102.94230 * 218.23242 * 4 2 1 17 17 C 1.54911 * 101.57879 * 35.50399 * 16 4 2 18 18 N 1.47015 * 110.01045 * 121.09900 * 2 1 3 19 19 C 1.36939 * 125.65161 * 298.46731 * 18 2 1 20 20 H 1.08002 * 119.99789 * 359.97438 * 19 18 2 21 21 C 1.38817 * 120.00123 * 180.02562 * 19 18 2 22 22 N 1.31611 * 119.99787 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99623 * 180.02562 * 21 19 18 24 24 H 1.48491 * 109.47110 * 60.00054 * 23 21 19 25 25 H 1.48498 * 109.46896 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.46947 * 299.99814 * 23 21 19 27 27 H 1.09003 * 109.46842 * 181.01580 * 1 2 3 28 28 H 1.08993 * 109.47191 * 301.01571 * 1 2 3 29 29 H 1.09000 * 109.47214 * 61.01731 * 1 2 3 30 30 H 0.96991 * 120.00337 * 25.00025 * 6 4 2 31 31 H 1.09005 * 113.61328 * 203.67708 * 11 9 7 32 32 H 1.09001 * 113.61399 * 334.48902 * 11 9 7 33 33 H 1.08999 * 113.61455 * 270.87961 * 12 11 9 34 34 H 1.09006 * 113.61338 * 139.98502 * 12 11 9 35 35 H 1.09002 * 109.46888 * 153.76518 * 14 13 12 36 36 H 1.08996 * 109.47302 * 273.77039 * 14 13 12 37 37 H 1.09000 * 109.46806 * 33.77064 * 14 13 12 38 38 H 1.09002 * 109.47512 * 322.49829 * 15 13 12 39 39 H 1.09003 * 109.47499 * 82.50318 * 15 13 12 40 40 H 1.09002 * 109.47108 * 202.49858 * 15 13 12 41 41 H 1.08996 * 111.00564 * 153.57645 * 16 4 2 42 42 H 1.09002 * 111.00797 * 277.43450 * 16 4 2 43 43 H 1.09004 * 110.36436 * 204.14880 * 17 16 4 44 44 H 1.08999 * 110.36553 * 81.82830 * 17 16 4 45 45 H 0.97007 * 119.99624 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0250 0.0000 4 6 2.0549 -0.7478 -1.2438 5 1 1.3050 -1.4434 -1.6205 6 7 2.4521 0.1993 -2.2886 7 6 2.4539 -0.1845 -3.5806 8 8 2.1272 -1.3140 -3.8782 9 6 2.8631 0.7894 -4.6553 10 1 3.7098 1.4106 -4.3636 11 6 3.0195 0.1474 -6.0440 12 6 1.5277 0.4487 -6.2646 13 6 1.6874 1.5874 -5.2435 14 6 0.5005 1.7244 -4.2877 15 6 2.1036 2.9193 -5.8708 16 6 3.2901 -1.5101 -0.6955 17 6 2.8196 -1.8770 0.7341 18 7 2.0331 -0.7135 1.1829 19 6 1.8079 -0.3570 2.4857 20 1 1.2151 0.5171 2.7116 21 6 2.3422 -1.1186 3.5160 22 7 3.0649 -2.1835 3.2407 23 14 2.0343 -0.6326 5.2932 24 1 0.5740 -0.6393 5.5623 25 1 2.7088 -1.6005 6.1950 26 1 2.5760 0.7288 5.5351 27 1 -0.3633 -1.0275 0.0182 28 1 -0.3633 0.5295 0.8807 29 1 -0.3633 0.4979 -0.8990 30 1 2.7137 1.1024 -2.0506 31 1 3.6803 0.7027 -6.7098 32 1 3.2509 -0.9172 -6.0092 33 1 0.8666 -0.3499 -5.9283 34 1 1.2965 0.7948 -7.2720 35 1 0.8357 2.1783 -3.3550 36 1 -0.2630 2.3540 -4.7444 37 1 0.0835 0.7384 -4.0826 38 1 2.8090 2.7347 -6.6810 39 1 1.2228 3.4266 -6.2645 40 1 2.5755 3.5457 -5.1139 41 1 3.4888 -2.4061 -1.2833 42 1 4.1665 -0.8628 -0.6642 43 1 3.6780 -2.0298 1.3884 44 1 2.1956 -2.7704 0.7106 45 1 3.4387 -2.7154 3.9607 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088803759.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:16:59 Heat of formation + Delta-G solvation = -2.125682 kcal Electronic energy + Delta-G solvation = -23166.336201 eV Core-core repulsion = 19991.721388 eV Total energy + Delta-G solvation = -3174.614813 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.86697 -38.51798 -37.04118 -33.98200 -32.00364 -30.82608 -30.37042 -28.82740 -27.64992 -26.70280 -24.41098 -23.96994 -22.65890 -20.89477 -20.13843 -19.81151 -18.24122 -16.89255 -16.57603 -15.73411 -15.49245 -14.84197 -14.68726 -14.39598 -13.93303 -13.84535 -13.43461 -13.21284 -13.13469 -12.73317 -12.46153 -12.26604 -12.11845 -11.93244 -11.58975 -11.55351 -11.27832 -11.13909 -10.97889 -10.84319 -10.81512 -10.54029 -10.40362 -10.25411 -10.19210 -10.12225 -9.73759 -9.59673 -9.43481 -8.66800 -8.55085 -6.87388 -5.65321 -3.08246 2.80253 3.37755 3.40243 3.44806 3.45973 4.28267 4.41636 4.47731 4.59781 4.68797 5.01624 5.11107 5.32371 5.35978 5.42671 5.42991 5.47820 5.56617 5.58898 5.65524 5.65847 5.70539 5.80351 5.84631 5.88450 5.97531 6.10675 6.13521 6.21926 6.26960 6.32373 6.34048 6.39227 6.56157 6.63271 6.73119 6.88692 7.14070 7.52386 7.62191 7.80793 7.85646 8.34856 8.50077 9.20618 9.81677 10.45797 11.37872 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.034788 B = 0.003933 C = 0.003735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.677848 B = 7116.784116 C = 7495.746510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.155 3.845 3 H 0.035 0.965 4 C 0.135 3.865 5 H 0.092 0.908 6 N -0.713 5.713 7 C 0.534 3.466 8 O -0.543 6.543 9 C -0.134 4.134 10 H 0.094 0.906 11 C -0.120 4.120 12 C -0.130 4.130 13 C -0.071 4.071 14 C -0.142 4.142 15 C -0.127 4.127 16 C -0.153 4.153 17 C 0.153 3.847 18 N -0.595 5.595 19 C -0.221 4.221 20 H 0.077 0.923 21 C -0.010 4.010 22 N -0.921 5.921 23 Si 0.914 3.086 24 H -0.286 1.286 25 H -0.290 1.290 26 H -0.285 1.285 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.037 0.963 30 H 0.397 0.603 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.066 0.934 35 H 0.059 0.941 36 H 0.057 0.943 37 H 0.059 0.941 38 H 0.058 0.942 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.061 0.939 43 H 0.109 0.891 44 H 0.014 0.986 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.854 9.009 -17.437 19.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.047 3.953 3 H 0.052 0.948 4 C 0.031 3.969 5 H 0.110 0.890 6 N -0.363 5.363 7 C 0.320 3.680 8 O -0.420 6.420 9 C -0.155 4.155 10 H 0.112 0.888 11 C -0.158 4.158 12 C -0.167 4.167 13 C -0.071 4.071 14 C -0.199 4.199 15 C -0.184 4.184 16 C -0.193 4.193 17 C 0.028 3.972 18 N -0.320 5.320 19 C -0.350 4.350 20 H 0.095 0.905 21 C -0.205 4.205 22 N -0.569 5.569 23 Si 0.744 3.256 24 H -0.212 1.212 25 H -0.216 1.216 26 H -0.212 1.212 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.056 0.944 30 H 0.231 0.769 31 H 0.102 0.898 32 H 0.098 0.902 33 H 0.106 0.894 34 H 0.084 0.916 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.126 0.874 44 H 0.032 0.968 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -1.035 8.101 -17.397 19.218 hybrid contribution -0.061 0.669 1.153 1.334 sum -1.095 8.769 -16.244 18.493 Atomic orbital electron populations 1.22231 0.97960 1.01370 0.99835 1.20988 0.92529 0.94755 0.86999 0.94789 1.22135 0.97566 0.90828 0.86400 0.88981 1.46064 1.68157 1.15964 1.06071 1.19884 0.77126 0.87943 0.83032 1.90672 1.48248 1.20738 1.82351 1.22617 1.00011 0.97891 0.95009 0.88761 1.22691 0.97120 1.01909 0.94050 1.23070 0.97205 0.97857 0.98597 1.21734 0.94355 0.94732 0.96286 1.21832 0.97002 1.02309 0.98805 1.21605 1.01417 0.94927 1.00446 1.23393 0.96804 0.99320 0.99761 1.21949 0.97344 0.88388 0.89537 1.44477 1.59045 1.28421 1.00061 1.18980 1.27107 1.08325 0.80558 0.90541 1.24782 1.00325 0.97388 0.98024 1.69787 1.38861 1.17980 1.30297 0.86164 0.77643 0.77413 0.84330 1.21231 1.21584 1.21193 0.92993 0.92795 0.94362 0.76913 0.89808 0.90182 0.89407 0.91576 0.92149 0.92362 0.92171 0.92257 0.92053 0.92122 0.92106 0.92045 0.87355 0.96821 0.93652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 9.14 37.16 0.34 -2.54 16 2 C 0.16 3.12 3.47 -66.95 -0.23 2.89 16 3 H 0.03 0.67 7.72 -51.93 -0.40 0.27 16 4 C 0.14 2.48 2.85 -66.09 -0.19 2.29 16 5 H 0.09 1.83 7.26 -51.93 -0.38 1.46 16 6 N -0.71 -10.49 5.15 -52.02 -0.27 -10.76 16 7 C 0.53 7.89 5.60 -10.99 -0.06 7.83 16 8 O -0.54 -10.03 15.11 5.55 0.08 -9.95 16 9 C -0.13 -1.47 3.85 -90.96 -0.35 -1.82 16 10 H 0.09 0.89 8.10 -51.93 -0.42 0.47 16 11 C -0.12 -1.25 7.08 -25.92 -0.18 -1.43 16 12 C -0.13 -1.33 6.81 -25.92 -0.18 -1.51 16 13 C -0.07 -0.67 1.34 -153.70 -0.21 -0.88 16 14 C -0.14 -1.47 8.29 37.16 0.31 -1.16 16 15 C -0.13 -0.93 9.07 37.16 0.34 -0.60 16 16 C -0.15 -3.07 6.77 -24.58 -0.17 -3.24 16 17 C 0.15 3.75 5.89 -2.53 -0.01 3.73 16 18 N -0.59 -14.83 3.13 -162.57 -0.51 -15.34 16 19 C -0.22 -6.02 9.89 -15.06 -0.15 -6.17 16 20 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 21 C -0.01 -0.27 5.49 -17.43 -0.10 -0.36 16 22 N -0.92 -26.66 10.09 55.49 0.56 -26.10 16 23 Si 0.91 21.85 29.55 -169.99 -5.02 16.83 16 24 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 26 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 27 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.05 1.03 8.05 -51.93 -0.42 0.62 16 29 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.40 4.97 8.37 -40.82 -0.34 4.63 16 31 H 0.08 0.69 7.65 -51.93 -0.40 0.29 16 32 H 0.08 0.98 7.57 -51.93 -0.39 0.59 16 33 H 0.09 1.08 7.53 -51.93 -0.39 0.69 16 34 H 0.07 0.57 8.10 -51.93 -0.42 0.15 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.52 8.11 -51.93 -0.42 0.10 16 37 H 0.06 0.75 7.32 -51.93 -0.38 0.37 16 38 H 0.06 0.39 7.34 -51.93 -0.38 0.01 16 39 H 0.06 0.41 8.12 -51.93 -0.42 -0.01 16 40 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 43 H 0.11 2.97 5.87 -51.93 -0.30 2.66 16 44 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 350.12 15.07 5.28 5.28 Total: -1.00 -30.44 350.12 -8.69 -39.13 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -7.97 Total: 3.87 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: -0.84 Total: -2.97 kcal Atomic # 7 Polarization: -51.97 SS G_CDS: -0.22 Total: -52.19 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: 0.08 Total: -9.95 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.44 -8.69 -39.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088803759.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.008 kcal (2) G-P(sol) polarization free energy of solvation -30.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds