Wall clock time and date at job start Tue Mar 31 2020 02:16:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.87322 * 2 1 4 4 C 1.54327 * 109.88146 * 238.98433 * 2 1 3 5 5 H 1.08998 * 110.72118 * 336.77642 * 4 2 1 6 6 N 1.46505 * 110.71543 * 99.87384 * 4 2 1 7 7 C 1.34775 * 119.99407 * 204.99849 * 6 4 2 8 8 O 1.21286 * 120.00485 * 359.97438 * 7 6 4 9 9 C 1.50701 * 119.99841 * 180.02562 * 7 6 4 10 10 H 1.09000 * 112.85187 * 39.92827 * 9 7 6 11 11 C 1.53783 * 113.69117 * 171.20093 * 9 7 6 12 12 C 1.53780 * 87.08109 * 89.12610 * 11 9 7 13 13 C 1.53776 * 87.08170 * 25.43303 * 12 11 9 14 14 C 1.53001 * 113.61400 * 220.01798 * 13 12 11 15 15 C 1.52995 * 113.61428 * 89.11709 * 13 12 11 16 16 C 1.55158 * 102.94230 * 218.23242 * 4 2 1 17 17 C 1.54911 * 101.57879 * 35.50399 * 16 4 2 18 18 N 1.47015 * 110.01045 * 121.09900 * 2 1 3 19 19 C 1.36939 * 125.65161 * 298.46731 * 18 2 1 20 20 H 1.08002 * 119.99789 * 359.97438 * 19 18 2 21 21 C 1.38817 * 120.00123 * 180.02562 * 19 18 2 22 22 N 1.31611 * 119.99787 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99623 * 180.02562 * 21 19 18 24 24 H 1.48491 * 109.47110 * 60.00054 * 23 21 19 25 25 H 1.48498 * 109.46896 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.46947 * 299.99814 * 23 21 19 27 27 H 1.09003 * 109.46842 * 181.01580 * 1 2 3 28 28 H 1.08993 * 109.47191 * 301.01571 * 1 2 3 29 29 H 1.09000 * 109.47214 * 61.01731 * 1 2 3 30 30 H 0.96991 * 120.00337 * 25.00025 * 6 4 2 31 31 H 1.09005 * 113.61328 * 203.67708 * 11 9 7 32 32 H 1.09001 * 113.61399 * 334.48902 * 11 9 7 33 33 H 1.08999 * 113.61455 * 270.87961 * 12 11 9 34 34 H 1.09006 * 113.61338 * 139.98502 * 12 11 9 35 35 H 1.09002 * 109.46888 * 153.76518 * 14 13 12 36 36 H 1.08996 * 109.47302 * 273.77039 * 14 13 12 37 37 H 1.09000 * 109.46806 * 33.77064 * 14 13 12 38 38 H 1.09002 * 109.47512 * 322.49829 * 15 13 12 39 39 H 1.09003 * 109.47499 * 82.50318 * 15 13 12 40 40 H 1.09002 * 109.47108 * 202.49858 * 15 13 12 41 41 H 1.08996 * 111.00564 * 153.57645 * 16 4 2 42 42 H 1.09002 * 111.00797 * 277.43450 * 16 4 2 43 43 H 1.09004 * 110.36436 * 204.14880 * 17 16 4 44 44 H 1.08999 * 110.36553 * 81.82830 * 17 16 4 45 45 H 0.97007 * 119.99624 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0250 0.0000 4 6 2.0549 -0.7478 -1.2438 5 1 1.3050 -1.4434 -1.6205 6 7 2.4521 0.1993 -2.2886 7 6 2.4539 -0.1845 -3.5806 8 8 2.1272 -1.3140 -3.8782 9 6 2.8631 0.7894 -4.6553 10 1 3.7098 1.4106 -4.3636 11 6 3.0195 0.1474 -6.0440 12 6 1.5277 0.4487 -6.2646 13 6 1.6874 1.5874 -5.2435 14 6 0.5005 1.7244 -4.2877 15 6 2.1036 2.9193 -5.8708 16 6 3.2901 -1.5101 -0.6955 17 6 2.8196 -1.8770 0.7341 18 7 2.0331 -0.7135 1.1829 19 6 1.8079 -0.3570 2.4857 20 1 1.2151 0.5171 2.7116 21 6 2.3422 -1.1186 3.5160 22 7 3.0649 -2.1835 3.2407 23 14 2.0343 -0.6326 5.2932 24 1 0.5740 -0.6393 5.5623 25 1 2.7088 -1.6005 6.1950 26 1 2.5760 0.7288 5.5351 27 1 -0.3633 -1.0275 0.0182 28 1 -0.3633 0.5295 0.8807 29 1 -0.3633 0.4979 -0.8990 30 1 2.7137 1.1024 -2.0506 31 1 3.6803 0.7027 -6.7098 32 1 3.2509 -0.9172 -6.0092 33 1 0.8666 -0.3499 -5.9283 34 1 1.2965 0.7948 -7.2720 35 1 0.8357 2.1783 -3.3550 36 1 -0.2630 2.3540 -4.7444 37 1 0.0835 0.7384 -4.0826 38 1 2.8090 2.7347 -6.6810 39 1 1.2228 3.4266 -6.2645 40 1 2.5755 3.5457 -5.1139 41 1 3.4888 -2.4061 -1.2833 42 1 4.1665 -0.8628 -0.6642 43 1 3.6780 -2.0298 1.3884 44 1 2.1956 -2.7704 0.7106 45 1 3.4387 -2.7154 3.9607 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088803759.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:16:58 Heat of formation + Delta-G solvation = -20.378544 kcal Electronic energy + Delta-G solvation = -23167.127704 eV Core-core repulsion = 19991.721388 eV Total energy + Delta-G solvation = -3175.406317 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.88815 -39.93852 -38.41771 -35.58457 -33.82351 -32.08057 -31.58359 -30.61433 -28.41270 -27.78726 -26.10499 -25.68634 -23.52076 -22.30433 -21.62582 -21.45648 -19.34873 -18.71949 -17.81531 -17.15171 -16.59404 -16.45673 -15.81763 -15.72176 -15.47161 -15.14935 -14.65575 -14.49377 -14.15100 -14.01529 -13.98630 -13.63971 -13.25211 -13.11096 -12.95242 -12.91063 -12.71788 -12.61184 -12.35380 -12.26757 -12.12696 -12.04422 -12.01422 -11.77811 -11.58127 -11.44553 -11.05846 -10.97722 -10.73851 -10.66789 -9.97565 -8.90404 -7.74629 -5.19944 1.48361 1.51302 1.57486 1.64270 2.15917 2.52890 3.35740 3.48473 3.53636 3.59515 3.76393 3.86000 3.88936 3.95842 4.18413 4.25745 4.30598 4.48384 4.60035 4.61561 4.67798 4.70008 4.77916 4.79149 4.87541 4.92878 4.93881 5.03113 5.04152 5.09492 5.13696 5.18338 5.22289 5.34281 5.35713 5.44939 5.49325 5.58816 5.62994 5.64742 5.79290 6.30054 6.62833 7.10911 7.31967 7.78848 8.42722 9.27131 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.034788 B = 0.003933 C = 0.003735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.677848 B = 7116.784116 C = 7495.746510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.152 3.848 3 H 0.052 0.948 4 C 0.154 3.846 5 H 0.075 0.925 6 N -0.702 5.702 7 C 0.533 3.467 8 O -0.584 6.584 9 C -0.135 4.135 10 H 0.120 0.880 11 C -0.117 4.117 12 C -0.134 4.134 13 C -0.059 4.059 14 C -0.143 4.143 15 C -0.123 4.123 16 C -0.139 4.139 17 C 0.158 3.842 18 N -0.613 5.613 19 C -0.230 4.230 20 H 0.085 0.915 21 C -0.068 4.068 22 N -0.951 5.951 23 Si 0.979 3.021 24 H -0.280 1.280 25 H -0.297 1.297 26 H -0.274 1.274 27 H 0.032 0.968 28 H 0.048 0.952 29 H 0.069 0.931 30 H 0.412 0.588 31 H 0.115 0.885 32 H 0.054 0.946 33 H 0.057 0.943 34 H 0.085 0.915 35 H 0.063 0.937 36 H 0.072 0.928 37 H 0.031 0.969 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.062 0.938 42 H 0.071 0.929 43 H 0.078 0.922 44 H -0.017 1.017 45 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.780 12.077 -18.930 22.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.045 3.955 3 H 0.070 0.930 4 C 0.048 3.952 5 H 0.093 0.907 6 N -0.353 5.353 7 C 0.321 3.679 8 O -0.464 6.464 9 C -0.156 4.156 10 H 0.138 0.862 11 C -0.155 4.155 12 C -0.171 4.171 13 C -0.060 4.060 14 C -0.200 4.200 15 C -0.180 4.180 16 C -0.178 4.178 17 C 0.032 3.968 18 N -0.338 5.338 19 C -0.358 4.358 20 H 0.103 0.897 21 C -0.260 4.260 22 N -0.601 5.601 23 Si 0.807 3.193 24 H -0.206 1.206 25 H -0.223 1.223 26 H -0.200 1.200 27 H 0.052 0.948 28 H 0.067 0.933 29 H 0.088 0.912 30 H 0.249 0.751 31 H 0.133 0.867 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.104 0.896 35 H 0.082 0.918 36 H 0.091 0.909 37 H 0.050 0.950 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.081 0.919 42 H 0.090 0.910 43 H 0.096 0.904 44 H 0.001 0.999 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -0.971 11.226 -18.921 22.022 hybrid contribution -0.121 -0.307 1.556 1.591 sum -1.092 10.919 -17.365 20.542 Atomic orbital electron populations 1.22109 0.96692 1.00530 1.01116 1.21183 0.93392 0.95067 0.85841 0.93030 1.21662 0.96007 0.90893 0.86678 0.90714 1.45875 1.68046 1.15975 1.05431 1.20614 0.75822 0.88032 0.83398 1.90664 1.49919 1.22892 1.82900 1.22662 1.01612 0.97511 0.93825 0.86188 1.22759 0.97719 1.00808 0.94206 1.23040 0.96661 0.97509 0.99921 1.21756 0.93126 0.95611 0.95462 1.21837 0.97801 1.00949 0.99458 1.21612 1.02206 0.93245 1.00929 1.23195 0.97810 0.99893 0.96937 1.21665 0.95699 0.87777 0.91642 1.44711 1.59522 1.28724 1.00877 1.19371 1.26409 1.08299 0.81752 0.89678 1.25615 1.00735 0.97687 1.01973 1.70040 1.40120 1.19111 1.30839 0.85141 0.77493 0.77173 0.79455 1.20637 1.22347 1.20013 0.94843 0.93330 0.91224 0.75136 0.86705 0.92723 0.92418 0.89594 0.91782 0.90887 0.94986 0.91048 0.91168 0.91150 0.91923 0.91048 0.90400 0.99948 0.94452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.28 9.14 71.98 0.66 -4.62 16 2 C 0.15 5.97 3.47 45.35 0.16 6.12 16 3 H 0.05 1.89 7.72 -2.39 -0.02 1.87 16 4 C 0.15 5.56 2.85 46.18 0.13 5.69 16 5 H 0.07 3.02 7.26 -2.39 -0.02 3.00 16 6 N -0.70 -19.51 5.15 -436.90 -2.25 -21.76 16 7 C 0.53 15.14 5.60 87.66 0.49 15.63 16 8 O -0.58 -21.79 15.11 -3.05 -0.05 -21.83 16 9 C -0.13 -2.61 3.85 -11.01 -0.04 -2.66 16 10 H 0.12 1.75 8.10 -2.39 -0.02 1.74 16 11 C -0.12 -2.18 7.08 31.12 0.22 -1.96 16 12 C -0.13 -2.50 6.81 31.12 0.21 -2.29 16 13 C -0.06 -0.95 1.34 -51.66 -0.07 -1.02 16 14 C -0.14 -2.64 8.29 71.98 0.60 -2.04 16 15 C -0.12 -1.26 9.07 71.98 0.65 -0.60 16 16 C -0.14 -5.61 6.77 31.99 0.22 -5.39 16 17 C 0.16 8.03 5.89 86.86 0.51 8.54 16 18 N -0.61 -30.88 3.13 -668.24 -2.09 -32.97 16 19 C -0.23 -12.52 9.89 84.03 0.83 -11.68 16 20 H 0.09 4.39 7.83 -2.91 -0.02 4.36 16 21 C -0.07 -3.81 5.49 84.86 0.47 -3.34 16 22 N -0.95 -56.87 10.09 21.65 0.22 -56.65 16 23 Si 0.98 45.27 29.55 68.60 2.03 47.30 16 24 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 25 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 26 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 27 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.05 1.80 8.05 -2.39 -0.02 1.78 16 29 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.41 9.12 8.37 -92.72 -0.78 8.35 16 31 H 0.11 1.43 7.65 -2.38 -0.02 1.41 16 32 H 0.05 1.31 7.57 -2.39 -0.02 1.29 16 33 H 0.06 1.43 7.53 -2.39 -0.02 1.42 16 34 H 0.09 1.25 8.10 -2.38 -0.02 1.23 16 35 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.07 1.12 8.11 -2.39 -0.02 1.10 16 37 H 0.03 0.76 7.32 -2.39 -0.02 0.74 16 38 H 0.07 0.59 7.34 -2.39 -0.02 0.57 16 39 H 0.07 0.63 8.12 -2.39 -0.02 0.62 16 40 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 41 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 42 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 43 H 0.08 4.47 5.87 -2.39 -0.01 4.45 16 44 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 45 H 0.25 14.38 8.31 -92.70 -0.77 13.61 16 Total: -1.00 -68.33 350.12 3.07 -65.26 By element: Atomic # 1 Polarization: 20.10 SS G_CDS: 0.18 Total: 20.28 kcal Atomic # 6 Polarization: -4.65 SS G_CDS: 5.03 Total: 0.38 kcal Atomic # 7 Polarization: -107.26 SS G_CDS: -4.12 Total: -111.38 kcal Atomic # 8 Polarization: -21.79 SS G_CDS: -0.05 Total: -21.83 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -68.33 3.07 -65.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088803759.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.884 kcal (2) G-P(sol) polarization free energy of solvation -68.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds