Wall clock time and date at job start Tue Mar 31 2020 02:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 110.64441 * 2 1 4 4 C 1.54318 * 110.72086 * 236.65836 * 2 1 3 5 5 N 1.47029 * 107.27169 * 219.44277 * 4 2 1 6 6 C 1.36943 * 125.64654 * 178.95795 * 5 4 2 7 7 H 1.07998 * 119.99458 * 179.97438 * 6 5 4 8 8 C 1.38808 * 120.00234 * 359.97438 * 6 5 4 9 9 N 1.31618 * 119.99704 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00118 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47127 * 59.99654 * 10 8 6 12 12 H 1.48496 * 109.47401 * 180.02562 * 10 8 6 13 13 H 1.48509 * 109.46783 * 299.99940 * 10 8 6 14 14 C 1.47428 * 108.70189 * 358.94384 * 5 4 2 15 15 C 1.54909 * 104.82958 * 24.12465 * 14 5 4 16 16 H 1.08999 * 111.03665 * 81.08380 * 15 14 5 17 17 C 1.53003 * 111.00128 * 204.91335 * 15 14 5 18 18 N 1.46503 * 109.47338 * 287.19982 * 17 15 14 19 19 C 1.34774 * 119.99796 * 179.97438 * 18 17 15 20 20 O 1.21280 * 120.00327 * 359.97438 * 19 18 17 21 21 C 1.50697 * 119.99995 * 180.02562 * 19 18 17 22 22 C 1.52998 * 109.47422 * 179.97438 * 21 19 18 23 23 C 1.52999 * 109.47331 * 179.97438 * 22 21 19 24 24 C 1.53002 * 117.49968 * 174.99931 * 23 22 21 25 25 C 1.53000 * 60.02940 * 107.50530 * 24 23 22 26 26 H 1.09001 * 109.46966 * 296.86476 * 1 2 3 27 27 H 1.08999 * 109.46896 * 56.85948 * 1 2 3 28 28 H 1.08994 * 109.47282 * 176.86365 * 1 2 3 29 29 H 1.09001 * 109.88354 * 338.85908 * 4 2 1 30 30 H 1.09002 * 109.88214 * 100.02817 * 4 2 1 31 31 H 0.97001 * 119.99903 * 179.97438 * 9 8 6 32 32 H 1.08997 * 110.36306 * 265.28759 * 14 5 4 33 33 H 1.08996 * 110.36439 * 142.96382 * 14 5 4 34 34 H 1.08997 * 109.47311 * 167.20011 * 17 15 14 35 35 H 1.09004 * 109.46867 * 47.20201 * 17 15 14 36 36 H 0.96996 * 119.99871 * 359.97438 * 18 17 15 37 37 H 1.09007 * 109.47426 * 59.99635 * 21 19 18 38 38 H 1.09004 * 109.47094 * 299.99953 * 21 19 18 39 39 H 1.09002 * 109.46667 * 60.00003 * 22 21 19 40 40 H 1.08997 * 109.47591 * 300.00258 * 22 21 19 41 41 H 1.08999 * 115.55899 * 29.31737 * 23 22 21 42 42 H 1.09002 * 117.49918 * 0.02562 * 24 23 22 43 43 H 1.09002 * 117.49754 * 215.00713 * 24 23 22 44 44 H 1.09008 * 117.49673 * 107.47884 * 25 24 23 45 45 H 1.08999 * 117.49942 * 252.47315 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0760 -0.7933 -1.2058 5 7 3.2446 -1.5520 -0.7362 6 6 4.0041 -2.3999 -1.4974 7 1 4.8466 -2.9125 -1.0571 8 6 3.6913 -2.6005 -2.8348 9 7 2.6643 -1.9761 -3.3712 10 14 4.7279 -3.7565 -3.8733 11 1 4.6867 -5.1201 -3.2868 12 1 4.1901 -3.7957 -5.2569 13 1 6.1314 -3.2720 -3.9019 14 6 3.4633 -1.2485 0.6899 15 6 2.0789 -0.7933 1.2152 16 1 1.4448 -1.6506 1.4409 17 6 2.2277 0.1123 2.4394 18 7 2.6327 -0.6916 3.5953 19 6 2.8258 -0.1021 4.7918 20 8 2.6647 1.0940 4.9115 21 6 3.2430 -0.9289 5.9806 22 6 3.3929 -0.0232 7.2045 23 6 3.8158 -0.8628 8.4116 24 6 4.1331 -0.1211 9.7117 25 6 2.8463 -0.9404 9.5936 26 1 -0.3633 0.4644 0.9168 27 1 -0.3633 0.5618 -0.8605 28 1 -0.3633 -1.0261 -0.0562 29 1 1.3130 -1.4787 -1.5749 30 1 2.3741 -0.1059 -1.9975 31 1 2.4459 -2.1159 -4.3059 32 1 4.1931 -0.4464 0.7993 33 1 3.7959 -2.1404 1.2208 34 1 1.2748 0.5976 2.6504 35 1 2.9853 0.8704 2.2407 36 1 2.7619 -1.6482 3.4994 37 1 4.1959 -1.4143 5.7693 38 1 2.4855 -1.6870 6.1797 39 1 2.4402 0.4624 7.4159 40 1 4.1505 0.7346 7.0052 41 1 4.4032 -1.7521 8.1833 42 1 4.0402 0.9649 9.7072 43 1 4.9295 -0.5224 10.3385 44 1 2.7963 -1.8809 10.1425 45 1 1.9071 -0.3933 9.5117 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001101830975.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:29:38 Heat of formation + Delta-G solvation = -11.575465 kcal Electronic energy + Delta-G solvation = -21724.647835 eV Core-core repulsion = 18549.623249 eV Total energy + Delta-G solvation = -3175.024586 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.78257 -38.13801 -37.61410 -34.63229 -32.97105 -32.35841 -30.73283 -29.30284 -26.19113 -25.54859 -24.41216 -22.68242 -22.57142 -20.72947 -20.42616 -19.97930 -19.14740 -17.08720 -16.62598 -16.18727 -15.94563 -15.37590 -14.93240 -14.45955 -14.38621 -13.84522 -13.69470 -13.35267 -13.01948 -12.87860 -12.53137 -12.33665 -11.89126 -11.79617 -11.67233 -11.54519 -11.41314 -11.38409 -11.20634 -10.80736 -10.78041 -10.58656 -10.18594 -10.14327 -10.02300 -9.97334 -9.89362 -9.64911 -9.50087 -8.91660 -8.60363 -6.83353 -5.71390 -3.05023 2.70676 3.25251 3.39686 3.43957 3.45335 3.53074 4.39739 4.48810 4.58172 4.66605 4.74637 5.00685 5.07317 5.15995 5.22385 5.28153 5.33626 5.35677 5.49202 5.53336 5.57214 5.63007 5.73437 5.77531 5.82496 5.88486 5.90818 6.03312 6.11735 6.14358 6.19118 6.29642 6.48335 6.49905 6.57631 6.63134 6.77087 6.95109 7.56018 7.59193 7.64524 7.83460 8.26010 8.29556 9.21866 9.82242 10.48590 11.40136 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.025666 B = 0.002952 C = 0.002713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.660997 B = 9482.253090 C =10318.336736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.111 4.111 3 H 0.067 0.933 4 C 0.184 3.816 5 N -0.607 5.607 6 C -0.229 4.229 7 H 0.076 0.924 8 C -0.008 4.008 9 N -0.922 5.922 10 Si 0.912 3.088 11 H -0.285 1.285 12 H -0.290 1.290 13 H -0.285 1.285 14 C 0.142 3.858 15 C -0.112 4.112 16 H 0.080 0.920 17 C 0.132 3.868 18 N -0.726 5.726 19 C 0.509 3.491 20 O -0.548 6.548 21 C -0.138 4.138 22 C -0.073 4.073 23 C -0.154 4.154 24 C -0.182 4.182 25 C -0.183 4.183 26 H 0.044 0.956 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.049 0.951 30 H 0.041 0.959 31 H 0.253 0.747 32 H 0.019 0.981 33 H 0.035 0.965 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.402 0.598 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.070 0.930 40 H 0.074 0.926 41 H 0.105 0.895 42 H 0.094 0.906 43 H 0.092 0.908 44 H 0.092 0.908 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.502 1.475 20.482 20.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.131 4.131 3 H 0.085 0.915 4 C 0.059 3.941 5 N -0.333 5.333 6 C -0.358 4.358 7 H 0.094 0.906 8 C -0.205 4.205 9 N -0.569 5.569 10 Si 0.742 3.258 11 H -0.212 1.212 12 H -0.216 1.216 13 H -0.212 1.212 14 C 0.016 3.984 15 C -0.132 4.132 16 H 0.098 0.902 17 C 0.008 3.992 18 N -0.377 5.377 19 C 0.295 3.705 20 O -0.426 6.426 21 C -0.178 4.178 22 C -0.111 4.111 23 C -0.172 4.172 24 C -0.219 4.219 25 C -0.219 4.219 26 H 0.063 0.937 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.036 0.964 33 H 0.054 0.946 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.236 0.764 37 H 0.112 0.888 38 H 0.111 0.889 39 H 0.089 0.911 40 H 0.092 0.908 41 H 0.123 0.877 42 H 0.113 0.887 43 H 0.111 0.889 44 H 0.110 0.890 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.619 2.263 20.304 20.494 hybrid contribution 0.622 -1.144 -0.724 1.490 sum -0.997 1.119 19.580 19.637 Atomic orbital electron populations 1.21692 0.95331 1.01595 1.00539 1.22441 0.95152 0.99117 0.96368 0.91452 1.21222 0.89086 0.93051 0.90735 1.44469 1.32593 1.51466 1.04766 1.19003 1.07612 1.17753 0.91392 0.90566 1.24804 0.98424 1.00337 0.96908 1.69953 1.28694 1.45551 1.12719 0.86201 0.79500 0.80495 0.79561 1.21195 1.21600 1.21194 1.21579 0.93038 0.96982 0.86822 1.22672 0.99349 0.98038 0.93164 0.90205 1.21386 1.00039 0.93800 0.83958 1.46127 1.69882 1.12222 1.09475 1.20703 0.76969 0.88526 0.84286 1.90689 1.51571 1.15456 1.84916 1.21660 1.03575 0.99297 0.93313 1.20907 1.02512 0.96670 0.90994 1.22385 1.03473 1.01618 0.89734 1.22963 0.99342 0.99183 1.00394 1.23064 0.94467 1.02086 1.02333 0.93693 0.92773 0.92725 0.93297 0.94069 0.93704 0.96381 0.94650 0.91773 0.91501 0.76428 0.88808 0.88872 0.91102 0.90787 0.87685 0.88739 0.88916 0.88981 0.88756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.09 9.16 37.16 0.34 -1.75 16 2 C -0.11 -2.01 3.02 -88.79 -0.27 -2.28 16 3 H 0.07 1.20 8.04 -51.93 -0.42 0.78 16 4 C 0.18 4.40 4.97 -3.06 -0.02 4.38 16 5 N -0.61 -15.33 3.40 -170.07 -0.58 -15.90 16 6 C -0.23 -6.36 10.28 -15.06 -0.15 -6.51 16 7 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 8 C -0.01 -0.24 5.49 -17.43 -0.10 -0.33 16 9 N -0.92 -27.00 10.31 55.49 0.57 -26.43 16 10 Si 0.91 22.02 29.55 -169.99 -5.02 16.99 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 13 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 14 C 0.14 2.83 6.65 -2.53 -0.02 2.82 16 15 C -0.11 -1.85 2.50 -88.47 -0.22 -2.07 16 16 H 0.08 1.29 8.05 -51.93 -0.42 0.87 16 17 C 0.13 1.91 5.13 -4.04 -0.02 1.89 16 18 N -0.73 -9.00 5.50 -60.29 -0.33 -9.33 16 19 C 0.51 6.54 7.83 -10.99 -0.09 6.46 16 20 O -0.55 -9.20 15.98 5.56 0.09 -9.11 16 21 C -0.14 -1.23 5.66 -27.89 -0.16 -1.39 16 22 C -0.07 -0.68 4.79 -26.73 -0.13 -0.81 16 23 C -0.15 -1.19 5.74 -90.58 -0.52 -1.71 16 24 C -0.18 -1.33 10.25 -26.73 -0.27 -1.60 16 25 C -0.18 -1.31 10.18 -26.70 -0.27 -1.58 16 26 H 0.04 0.61 8.10 -51.93 -0.42 0.18 16 27 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.05 0.87 8.06 -51.93 -0.42 0.45 16 29 H 0.05 1.29 7.00 -51.93 -0.36 0.93 16 30 H 0.04 1.11 7.51 -51.93 -0.39 0.72 16 31 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 32 H 0.02 0.38 7.91 -51.93 -0.41 -0.03 16 33 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.94 8.10 -51.93 -0.42 0.51 16 35 H 0.07 1.06 7.96 -51.93 -0.41 0.65 16 36 H 0.40 4.16 8.47 -40.82 -0.35 3.82 16 37 H 0.09 0.70 8.14 -51.92 -0.42 0.28 16 38 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.73 7.84 -51.93 -0.41 0.33 16 40 H 0.07 0.78 8.10 -51.93 -0.42 0.36 16 41 H 0.11 0.72 8.07 -51.93 -0.42 0.30 16 42 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.09 0.57 8.14 -51.92 -0.42 0.15 16 45 H 0.09 0.68 8.03 -51.93 -0.42 0.26 16 LS Contribution 362.07 15.07 5.46 5.46 Total: -1.00 -31.97 362.07 -9.89 -41.86 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -8.19 Total: 0.95 kcal Atomic # 6 Polarization: -2.60 SS G_CDS: -1.89 Total: -4.48 kcal Atomic # 7 Polarization: -51.33 SS G_CDS: -0.34 Total: -51.66 kcal Atomic # 8 Polarization: -9.20 SS G_CDS: 0.09 Total: -9.11 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.97 -9.89 -41.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101830975.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.282 kcal (2) G-P(sol) polarization free energy of solvation -31.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds