Wall clock time and date at job start Tue Mar 31 2020 02:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 110.64441 * 2 1 4 4 C 1.54318 * 110.72086 * 236.65836 * 2 1 3 5 5 N 1.47029 * 107.27169 * 219.44277 * 4 2 1 6 6 C 1.36943 * 125.64654 * 178.95795 * 5 4 2 7 7 H 1.07998 * 119.99458 * 179.97438 * 6 5 4 8 8 C 1.38808 * 120.00234 * 359.97438 * 6 5 4 9 9 N 1.31618 * 119.99704 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00118 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47127 * 59.99654 * 10 8 6 12 12 H 1.48496 * 109.47401 * 180.02562 * 10 8 6 13 13 H 1.48509 * 109.46783 * 299.99940 * 10 8 6 14 14 C 1.47428 * 108.70189 * 358.94384 * 5 4 2 15 15 C 1.54909 * 104.82958 * 24.12465 * 14 5 4 16 16 H 1.08999 * 111.03665 * 81.08380 * 15 14 5 17 17 C 1.53003 * 111.00128 * 204.91335 * 15 14 5 18 18 N 1.46503 * 109.47338 * 287.19982 * 17 15 14 19 19 C 1.34774 * 119.99796 * 179.97438 * 18 17 15 20 20 O 1.21280 * 120.00327 * 359.97438 * 19 18 17 21 21 C 1.50697 * 119.99995 * 180.02562 * 19 18 17 22 22 C 1.52998 * 109.47422 * 179.97438 * 21 19 18 23 23 C 1.52999 * 109.47331 * 179.97438 * 22 21 19 24 24 C 1.53002 * 117.49968 * 174.99931 * 23 22 21 25 25 C 1.53000 * 60.02940 * 107.50530 * 24 23 22 26 26 H 1.09001 * 109.46966 * 296.86476 * 1 2 3 27 27 H 1.08999 * 109.46896 * 56.85948 * 1 2 3 28 28 H 1.08994 * 109.47282 * 176.86365 * 1 2 3 29 29 H 1.09001 * 109.88354 * 338.85908 * 4 2 1 30 30 H 1.09002 * 109.88214 * 100.02817 * 4 2 1 31 31 H 0.97001 * 119.99903 * 179.97438 * 9 8 6 32 32 H 1.08997 * 110.36306 * 265.28759 * 14 5 4 33 33 H 1.08996 * 110.36439 * 142.96382 * 14 5 4 34 34 H 1.08997 * 109.47311 * 167.20011 * 17 15 14 35 35 H 1.09004 * 109.46867 * 47.20201 * 17 15 14 36 36 H 0.96996 * 119.99871 * 359.97438 * 18 17 15 37 37 H 1.09007 * 109.47426 * 59.99635 * 21 19 18 38 38 H 1.09004 * 109.47094 * 299.99953 * 21 19 18 39 39 H 1.09002 * 109.46667 * 60.00003 * 22 21 19 40 40 H 1.08997 * 109.47591 * 300.00258 * 22 21 19 41 41 H 1.08999 * 115.55899 * 29.31737 * 23 22 21 42 42 H 1.09002 * 117.49918 * 0.02562 * 24 23 22 43 43 H 1.09002 * 117.49754 * 215.00713 * 24 23 22 44 44 H 1.09008 * 117.49673 * 107.47884 * 25 24 23 45 45 H 1.08999 * 117.49942 * 252.47315 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0760 -0.7933 -1.2058 5 7 3.2446 -1.5520 -0.7362 6 6 4.0041 -2.3999 -1.4974 7 1 4.8466 -2.9125 -1.0571 8 6 3.6913 -2.6005 -2.8348 9 7 2.6643 -1.9761 -3.3712 10 14 4.7279 -3.7565 -3.8733 11 1 4.6867 -5.1201 -3.2868 12 1 4.1901 -3.7957 -5.2569 13 1 6.1314 -3.2720 -3.9019 14 6 3.4633 -1.2485 0.6899 15 6 2.0789 -0.7933 1.2152 16 1 1.4448 -1.6506 1.4409 17 6 2.2277 0.1123 2.4394 18 7 2.6327 -0.6916 3.5953 19 6 2.8258 -0.1021 4.7918 20 8 2.6647 1.0940 4.9115 21 6 3.2430 -0.9289 5.9806 22 6 3.3929 -0.0232 7.2045 23 6 3.8158 -0.8628 8.4116 24 6 4.1331 -0.1211 9.7117 25 6 2.8463 -0.9404 9.5936 26 1 -0.3633 0.4644 0.9168 27 1 -0.3633 0.5618 -0.8605 28 1 -0.3633 -1.0261 -0.0562 29 1 1.3130 -1.4787 -1.5749 30 1 2.3741 -0.1059 -1.9975 31 1 2.4459 -2.1159 -4.3059 32 1 4.1931 -0.4464 0.7993 33 1 3.7959 -2.1404 1.2208 34 1 1.2748 0.5976 2.6504 35 1 2.9853 0.8704 2.2407 36 1 2.7619 -1.6482 3.4994 37 1 4.1959 -1.4143 5.7693 38 1 2.4855 -1.6870 6.1797 39 1 2.4402 0.4624 7.4159 40 1 4.1505 0.7346 7.0052 41 1 4.4032 -1.7521 8.1833 42 1 4.0402 0.9649 9.7072 43 1 4.9295 -0.5224 10.3385 44 1 2.7963 -1.8809 10.1425 45 1 1.9071 -0.3933 9.5117 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001101830975.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:29:37 Heat of formation + Delta-G solvation = -30.755450 kcal Electronic energy + Delta-G solvation = -21725.479542 eV Core-core repulsion = 18549.623249 eV Total energy + Delta-G solvation = -3175.856293 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.86385 -39.60049 -38.32984 -36.01445 -34.65092 -33.18194 -32.54224 -30.73091 -27.90341 -26.95464 -25.62497 -24.12611 -23.18044 -21.76745 -21.55782 -21.21908 -20.58105 -18.85596 -17.88405 -17.28043 -16.87721 -16.61109 -16.14112 -15.91910 -15.63539 -15.20601 -14.97900 -14.50273 -14.32526 -14.22116 -14.02032 -13.44484 -13.25745 -13.09511 -13.01595 -12.84521 -12.63989 -12.43270 -12.40387 -12.20683 -12.08816 -11.96517 -11.82960 -11.56276 -11.41187 -11.35999 -11.18478 -10.78919 -10.70626 -10.66204 -10.02338 -8.88987 -7.83925 -5.19705 1.45851 1.49157 1.55393 1.71610 2.27014 2.50002 2.95236 3.33828 3.62339 3.67924 3.82016 3.87963 3.95012 3.96442 4.08593 4.12430 4.34699 4.39105 4.45881 4.51608 4.60629 4.64790 4.73972 4.79066 4.83535 4.85685 4.87867 4.98037 5.08963 5.09306 5.09912 5.16909 5.18864 5.30972 5.34629 5.40734 5.47489 5.47645 5.54644 5.71840 5.82047 6.20943 6.62563 7.11097 7.31757 7.78995 8.43700 9.26158 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.025666 B = 0.002952 C = 0.002713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.660997 B = 9482.253090 C =10318.336736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.103 4.103 3 H 0.072 0.928 4 C 0.192 3.808 5 N -0.630 5.630 6 C -0.243 4.243 7 H 0.084 0.916 8 C -0.068 4.068 9 N -0.952 5.952 10 Si 0.979 3.021 11 H -0.274 1.274 12 H -0.296 1.296 13 H -0.279 1.279 14 C 0.138 3.862 15 C -0.089 4.089 16 H 0.090 0.910 17 C 0.144 3.856 18 N -0.719 5.719 19 C 0.506 3.494 20 O -0.592 6.592 21 C -0.129 4.129 22 C -0.070 4.070 23 C -0.156 4.156 24 C -0.188 4.188 25 C -0.181 4.181 26 H 0.074 0.926 27 H 0.053 0.947 28 H 0.049 0.951 29 H 0.017 0.983 30 H -0.002 1.002 31 H 0.246 0.754 32 H 0.015 0.985 33 H 0.050 0.950 34 H 0.071 0.929 35 H 0.053 0.947 36 H 0.414 0.586 37 H 0.116 0.884 38 H 0.118 0.882 39 H 0.055 0.945 40 H 0.056 0.944 41 H 0.120 0.880 42 H 0.087 0.913 43 H 0.103 0.897 44 H 0.104 0.896 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.249 0.199 22.588 22.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.123 4.123 3 H 0.090 0.910 4 C 0.067 3.933 5 N -0.356 5.356 6 C -0.372 4.372 7 H 0.101 0.899 8 C -0.261 4.261 9 N -0.601 5.601 10 Si 0.807 3.193 11 H -0.200 1.200 12 H -0.222 1.222 13 H -0.205 1.205 14 C 0.013 3.987 15 C -0.109 4.109 16 H 0.109 0.891 17 C 0.019 3.981 18 N -0.371 5.371 19 C 0.295 3.705 20 O -0.473 6.473 21 C -0.169 4.169 22 C -0.108 4.108 23 C -0.174 4.174 24 C -0.225 4.225 25 C -0.218 4.218 26 H 0.093 0.907 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.035 0.965 30 H 0.016 0.984 31 H 0.055 0.945 32 H 0.033 0.967 33 H 0.069 0.931 34 H 0.089 0.911 35 H 0.071 0.929 36 H 0.251 0.749 37 H 0.134 0.866 38 H 0.136 0.864 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.137 0.863 42 H 0.106 0.894 43 H 0.122 0.878 44 H 0.123 0.877 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.351 0.962 22.451 22.512 hybrid contribution 0.580 -0.708 -1.353 1.634 sum -0.771 0.253 21.098 21.113 Atomic orbital electron populations 1.21634 0.92985 1.01695 1.02119 1.22322 0.97009 0.98501 0.94429 0.90988 1.20978 0.88155 0.91926 0.92249 1.44809 1.32642 1.51178 1.06975 1.19438 1.07927 1.17770 0.92035 0.89857 1.25672 0.99862 1.02316 0.98275 1.70189 1.30354 1.47098 1.12431 0.85150 0.77938 0.78864 0.77368 1.19979 1.22224 1.20491 1.21761 0.95053 0.97501 0.84409 1.22462 0.96996 0.98287 0.93116 0.89134 1.21102 1.00058 0.93132 0.83766 1.46037 1.69505 1.12722 1.08824 1.21396 0.75834 0.88267 0.85019 1.90678 1.53469 1.17556 1.85564 1.21687 1.05300 0.98916 0.90955 1.20832 1.01200 0.96685 0.92130 1.22365 1.04049 1.01848 0.89092 1.23040 0.99960 0.98997 1.00462 1.23125 0.94157 1.02522 1.01950 0.90670 0.92803 0.93196 0.96472 0.98377 0.94476 0.96704 0.93128 0.91093 0.92863 0.74938 0.86626 0.86395 0.92600 0.92575 0.86252 0.89397 0.87814 0.87714 0.89153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.76 9.16 71.98 0.66 -3.10 16 2 C -0.10 -3.67 3.02 -9.61 -0.03 -3.70 16 3 H 0.07 2.51 8.04 -2.39 -0.02 2.49 16 4 C 0.19 9.47 4.97 86.73 0.43 9.90 16 5 N -0.63 -32.15 3.40 -691.98 -2.35 -34.50 16 6 C -0.24 -13.55 10.28 84.03 0.86 -12.69 16 7 H 0.08 4.40 7.83 -2.91 -0.02 4.38 16 8 C -0.07 -3.91 5.49 84.86 0.47 -3.44 16 9 N -0.95 -57.65 10.31 21.65 0.22 -57.43 16 10 Si 0.98 45.70 29.55 68.60 2.03 47.73 16 11 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 12 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 13 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 14 C 0.14 5.35 6.65 86.85 0.58 5.92 16 15 C -0.09 -2.77 2.50 -9.40 -0.02 -2.79 16 16 H 0.09 2.68 8.05 -2.39 -0.02 2.67 16 17 C 0.14 3.87 5.13 86.38 0.44 4.31 16 18 N -0.72 -15.94 5.50 -463.06 -2.55 -18.48 16 19 C 0.51 11.98 7.83 87.66 0.69 12.67 16 20 O -0.59 -19.33 15.98 -3.03 -0.05 -19.38 16 21 C -0.13 -1.93 5.66 29.85 0.17 -1.76 16 22 C -0.07 -1.21 4.79 30.59 0.15 -1.07 16 23 C -0.16 -2.05 5.74 -10.77 -0.06 -2.11 16 24 C -0.19 -2.44 10.25 30.60 0.31 -2.12 16 25 C -0.18 -2.22 10.18 30.62 0.31 -1.91 16 26 H 0.07 1.80 8.10 -2.39 -0.02 1.78 16 27 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.05 1.53 8.06 -2.39 -0.02 1.51 16 29 H 0.02 0.94 7.00 -2.39 -0.02 0.92 16 30 H 0.00 -0.12 7.51 -2.39 -0.02 -0.13 16 31 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 32 H 0.02 0.60 7.91 -2.39 -0.02 0.58 16 33 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.07 1.88 8.10 -2.39 -0.02 1.86 16 35 H 0.05 1.61 7.96 -2.39 -0.02 1.59 16 36 H 0.41 7.19 8.47 -92.71 -0.79 6.40 16 37 H 0.12 1.29 8.14 -2.38 -0.02 1.27 16 38 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.06 1.12 7.84 -2.39 -0.02 1.10 16 40 H 0.06 1.16 8.10 -2.39 -0.02 1.14 16 41 H 0.12 1.25 8.07 -2.39 -0.02 1.23 16 42 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 44 H 0.10 1.02 8.14 -2.38 -0.02 1.00 16 45 H 0.09 1.17 8.03 -2.39 -0.02 1.15 16 Total: -1.00 -71.41 362.07 2.42 -68.99 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: 0.16 Total: 14.96 kcal Atomic # 6 Polarization: -6.85 SS G_CDS: 4.95 Total: -1.89 kcal Atomic # 7 Polarization: -105.74 SS G_CDS: -4.67 Total: -110.41 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: -0.05 Total: -19.38 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -71.41 2.42 -68.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101830975.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.233 kcal (2) G-P(sol) polarization free energy of solvation -71.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds