Wall clock time and date at job start Tue Mar 31 2020 02:29:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50703 * 120.00049 * 2 1 4 4 C 1.53000 * 109.46912 * 124.99542 * 3 2 1 5 5 C 1.52997 * 109.47060 * 179.97438 * 4 3 2 6 6 C 1.50697 * 109.47466 * 180.02562 * 5 4 3 7 7 O 1.21282 * 120.00011 * 0.02562 * 6 5 4 8 8 N 1.34777 * 120.00369 * 180.02562 * 6 5 4 9 9 C 1.46505 * 120.00115 * 180.02562 * 8 6 5 10 10 C 1.53005 * 109.46784 * 179.97438 * 9 8 6 11 11 H 1.08996 * 110.88309 * 51.12215 * 10 9 8 12 12 C 1.54902 * 111.00329 * 287.19292 * 10 9 8 13 13 N 1.47424 * 104.83007 * 204.91849 * 12 10 9 14 14 C 1.36940 * 125.64737 * 204.08760 * 13 12 10 15 15 H 1.07994 * 120.00274 * 0.02724 * 14 13 12 16 16 C 1.38817 * 119.99975 * 180.02562 * 14 13 12 17 17 N 1.31626 * 119.99835 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00038 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47292 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47415 * 119.99575 * 18 16 14 21 21 H 1.48506 * 109.46719 * 239.99401 * 18 16 14 22 22 C 1.47015 * 108.70467 * 24.13076 * 13 12 10 23 23 C 1.54328 * 107.27065 * 358.93799 * 22 13 12 24 24 H 1.09005 * 110.71433 * 96.16819 * 23 22 13 25 25 C 1.52996 * 110.87461 * 219.37312 * 23 22 13 26 26 H 1.07994 * 120.00051 * 180.02562 * 1 2 3 27 27 H 1.08006 * 119.99867 * 0.02562 * 1 2 3 28 28 H 1.07996 * 119.99855 * 179.97438 * 2 1 3 29 29 H 1.09001 * 109.46980 * 4.99670 * 3 2 1 30 30 H 1.08992 * 109.47158 * 244.99775 * 3 2 1 31 31 H 1.09002 * 109.47398 * 300.00078 * 4 3 2 32 32 H 1.09001 * 109.47194 * 60.00258 * 4 3 2 33 33 H 1.09002 * 109.47153 * 300.00319 * 5 4 3 34 34 H 1.08998 * 109.47533 * 59.99948 * 5 4 3 35 35 H 0.97003 * 119.99640 * 0.02562 * 8 6 5 36 36 H 1.09002 * 109.46801 * 299.99526 * 9 8 6 37 37 H 1.08992 * 109.46823 * 59.99976 * 9 8 6 38 38 H 1.08998 * 110.37037 * 323.75872 * 12 10 9 39 39 H 1.09000 * 110.36780 * 86.08577 * 12 10 9 40 40 H 0.96998 * 119.99697 * 180.02562 * 17 16 14 41 41 H 1.09006 * 109.88418 * 239.52153 * 22 13 12 42 42 H 1.09004 * 109.88641 * 118.35600 * 22 13 12 43 43 H 1.08998 * 109.47157 * 173.61264 * 25 23 22 44 44 H 1.09003 * 109.47080 * 293.61227 * 25 23 22 45 45 H 1.09001 * 109.47183 * 53.60720 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0350 1.3331 1.1817 5 6 3.8005 2.6578 1.1814 6 6 4.7578 2.6852 2.3449 7 8 4.8219 1.7382 3.0998 8 7 5.5428 3.7620 2.5466 9 6 6.4738 3.7884 3.6775 10 6 7.2392 5.1132 3.6771 11 1 6.5537 5.9579 3.6088 12 6 8.2837 5.1507 2.5339 13 7 9.3071 6.1093 2.9890 14 6 10.1541 6.8172 2.1787 15 1 10.1037 6.6952 1.1068 16 6 11.0775 7.6918 2.7350 17 7 11.1385 7.8410 4.0413 18 14 12.2323 8.6581 1.6295 19 1 11.9632 8.3133 0.2105 20 1 12.0139 10.1124 1.8360 21 1 13.6384 8.3164 1.9635 22 6 9.2685 6.1785 4.4570 23 6 8.1452 5.2323 4.9310 24 1 8.5516 4.2592 5.2069 25 6 7.3730 5.8457 6.1006 26 1 -0.5400 -0.9353 0.0004 27 1 -0.5400 0.9354 -0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.3586 2.1317 0.0895 30 1 2.6214 1.4026 -0.9313 31 1 2.4772 1.2356 2.1131 32 1 3.7400 0.5066 1.0922 33 1 4.3584 2.7548 0.2500 34 1 3.0960 3.4847 1.2706 35 1 5.4912 4.5196 1.9430 36 1 5.9166 3.6905 4.6092 37 1 7.1786 2.9620 3.5870 38 1 8.7248 4.1643 2.3905 39 1 7.8223 5.4988 1.6097 40 1 11.7835 8.4524 4.4300 41 1 9.0525 7.1986 4.7746 42 1 10.2244 5.8545 4.8688 43 1 6.5182 5.2143 6.3427 44 1 8.0275 5.9199 6.9691 45 1 7.0232 6.8402 5.8234 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001102295667.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:29:46 Heat of formation + Delta-G solvation = -20.713250 kcal Electronic energy + Delta-G solvation = -21596.653426 eV Core-core repulsion = 18421.232595 eV Total energy + Delta-G solvation = -3175.420830 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.75752 -38.04235 -36.24014 -34.62014 -32.97768 -32.55116 -30.73751 -29.50207 -27.41340 -25.91955 -24.97454 -23.02041 -22.01401 -20.46535 -20.09980 -19.95931 -19.13159 -17.12055 -16.65199 -16.19923 -15.92733 -15.28657 -14.98720 -14.49202 -14.02553 -13.89900 -13.76547 -13.47708 -13.22264 -12.90712 -12.61326 -12.46142 -12.00655 -11.82963 -11.75494 -11.62617 -11.39411 -11.21875 -11.16837 -10.93125 -10.82438 -10.78518 -10.17823 -10.00321 -9.97853 -9.90176 -9.68619 -9.61857 -9.49080 -8.92081 -8.61515 -6.83810 -5.72224 -3.05757 1.99135 2.70256 3.28025 3.38485 3.43884 3.46449 4.47977 4.49647 4.63977 4.74903 4.94901 5.02600 5.10986 5.20790 5.26157 5.30879 5.37021 5.45440 5.52595 5.52807 5.56577 5.64951 5.76879 5.88139 5.91582 6.02949 6.10284 6.12753 6.18671 6.29178 6.34226 6.47949 6.48081 6.49490 6.57110 6.62641 6.76729 6.94551 7.56213 7.58807 7.64071 7.83226 8.25193 8.29358 9.21243 9.81579 10.47821 11.39402 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.026562 B = 0.002836 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.902145 B = 9872.373925 C =10716.224600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.150 4.150 3 C -0.097 4.097 4 C -0.099 4.099 5 C -0.142 4.142 6 C 0.509 3.491 7 O -0.548 6.548 8 N -0.726 5.726 9 C 0.132 3.868 10 C -0.112 4.112 11 H 0.080 0.920 12 C 0.142 3.858 13 N -0.607 5.607 14 C -0.228 4.228 15 H 0.078 0.922 16 C -0.010 4.010 17 N -0.921 5.921 18 Si 0.912 3.088 19 H -0.280 1.280 20 H -0.291 1.291 21 H -0.291 1.291 22 C 0.184 3.816 23 C -0.111 4.111 24 H 0.067 0.933 25 C -0.134 4.134 26 H 0.095 0.905 27 H 0.095 0.905 28 H 0.108 0.892 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.401 0.599 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.019 0.981 39 H 0.035 0.965 40 H 0.251 0.749 41 H 0.049 0.951 42 H 0.041 0.959 43 H 0.044 0.956 44 H 0.053 0.947 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.644 -9.787 -4.742 20.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.168 4.168 3 C -0.134 4.134 4 C -0.137 4.137 5 C -0.182 4.182 6 C 0.295 3.705 7 O -0.425 6.425 8 N -0.377 5.377 9 C 0.008 3.992 10 C -0.132 4.132 11 H 0.098 0.902 12 C 0.016 3.984 13 N -0.333 5.333 14 C -0.356 4.356 15 H 0.095 0.905 16 C -0.206 4.206 17 N -0.569 5.569 18 Si 0.742 3.258 19 H -0.205 1.205 20 H -0.218 1.218 21 H -0.218 1.218 22 C 0.059 3.941 23 C -0.131 4.131 24 H 0.085 0.915 25 C -0.191 4.191 26 H 0.113 0.887 27 H 0.113 0.887 28 H 0.126 0.874 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.112 0.888 34 H 0.110 0.890 35 H 0.236 0.764 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.036 0.964 39 H 0.054 0.946 40 H 0.062 0.938 41 H 0.067 0.933 42 H 0.059 0.941 43 H 0.063 0.937 44 H 0.072 0.928 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -17.399 -10.299 -4.170 20.644 hybrid contribution 0.709 0.942 -0.815 1.434 sum -16.690 -9.356 -4.985 19.772 Atomic orbital electron populations 1.23846 0.95991 1.01759 1.02049 1.22983 0.96024 0.98666 0.99086 1.20816 0.98239 0.95417 0.98912 1.21271 0.97646 0.96363 0.98424 1.21705 0.98316 1.00518 0.97689 1.20695 0.81104 0.82288 0.86419 1.90692 1.68685 1.35476 1.47680 1.46135 1.40695 1.19686 1.31229 1.21386 0.91217 0.98184 0.88394 1.22669 0.96790 0.95491 0.98262 0.90206 1.21579 0.89192 0.93293 0.94366 1.44482 1.39036 1.47476 1.02319 1.19096 1.10335 1.16792 0.89361 0.90450 1.24818 0.99686 1.00079 0.96010 1.69978 1.38263 1.40004 1.08629 0.86045 0.80660 0.79645 0.79413 1.20540 1.21772 1.21768 1.21218 0.93536 0.96019 0.83325 1.22442 0.96983 1.00278 0.93390 0.91465 1.21688 0.99132 1.00348 0.97981 0.88651 0.88653 0.87369 0.91456 0.90838 0.91129 0.91033 0.88814 0.88975 0.76442 0.91766 0.91509 0.96375 0.94642 0.93811 0.93308 0.94059 0.93676 0.92769 0.92729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.40 14.32 29.01 0.42 -0.99 16 2 C -0.15 -1.13 9.52 -36.03 -0.34 -1.48 16 3 C -0.10 -0.70 5.66 -27.88 -0.16 -0.85 16 4 C -0.10 -0.90 4.49 -26.73 -0.12 -1.02 16 5 C -0.14 -1.23 5.70 -27.89 -0.16 -1.39 16 6 C 0.51 6.50 7.83 -10.99 -0.09 6.42 16 7 O -0.55 -9.18 15.98 5.56 0.09 -9.10 16 8 N -0.73 -8.96 5.50 -60.29 -0.33 -9.29 16 9 C 0.13 1.91 5.13 -4.04 -0.02 1.89 16 10 C -0.11 -1.84 2.49 -88.48 -0.22 -2.06 16 11 H 0.08 1.29 8.05 -51.93 -0.42 0.87 16 12 C 0.14 2.82 6.65 -2.53 -0.02 2.81 16 13 N -0.61 -15.30 3.39 -170.08 -0.58 -15.88 16 14 C -0.23 -6.29 10.28 -15.06 -0.15 -6.45 16 15 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 16 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 17 N -0.92 -26.97 10.31 55.49 0.57 -26.40 16 18 Si 0.91 22.01 29.55 -169.99 -5.02 16.99 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 22 C 0.18 4.39 4.97 -3.07 -0.02 4.38 16 23 C -0.11 -2.01 3.01 -88.79 -0.27 -2.28 16 24 H 0.07 1.19 8.04 -51.93 -0.42 0.78 16 25 C -0.13 -2.08 9.17 37.16 0.34 -1.74 16 26 H 0.10 0.58 8.06 -52.49 -0.42 0.16 16 27 H 0.10 0.61 7.84 -52.48 -0.41 0.20 16 28 H 0.11 0.78 8.06 -52.49 -0.42 0.36 16 29 H 0.07 0.44 7.79 -51.93 -0.40 0.03 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 32 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 33 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.40 4.12 8.47 -40.82 -0.35 3.78 16 36 H 0.06 0.94 8.09 -51.93 -0.42 0.52 16 37 H 0.07 1.06 7.96 -51.93 -0.41 0.64 16 38 H 0.02 0.38 7.90 -51.93 -0.41 -0.03 16 39 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.25 7.14 8.31 -40.82 -0.34 6.81 16 41 H 0.05 1.29 7.02 -51.93 -0.36 0.92 16 42 H 0.04 1.11 7.51 -51.93 -0.39 0.72 16 43 H 0.04 0.61 8.09 -51.93 -0.42 0.19 16 44 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.05 0.87 8.07 -51.93 -0.42 0.45 16 LS Contribution 364.75 15.07 5.50 5.50 Total: -1.00 -32.13 364.75 -8.86 -40.99 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -8.18 Total: 0.33 kcal Atomic # 6 Polarization: -2.24 SS G_CDS: -0.90 Total: -3.14 kcal Atomic # 7 Polarization: -51.23 SS G_CDS: -0.34 Total: -51.56 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: 0.09 Total: -9.10 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.13 -8.86 -40.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102295667.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.276 kcal (2) G-P(sol) polarization free energy of solvation -32.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds