Wall clock time and date at job start Tue Mar 31 2020 02:25:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.50701 * 119.99972 * 2 1 4 4 C 1.32995 * 119.99850 * 180.02562 * 2 1 3 5 5 C 1.47096 * 120.00242 * 352.83716 * 4 2 1 6 6 O 1.21610 * 119.99852 * 353.99674 * 5 4 2 7 7 N 1.34770 * 120.00121 * 174.27164 * 5 4 2 8 8 C 1.48122 * 127.03428 * 359.40735 * 7 5 4 9 9 C 1.54592 * 103.42489 * 219.28776 * 8 7 5 10 10 H 1.09005 * 110.73039 * 81.24119 * 9 8 7 11 11 C 1.53001 * 110.83351 * 204.44398 * 9 8 7 12 12 C 1.54617 * 102.91477 * 322.86807 * 9 8 7 13 13 H 1.09000 * 110.33084 * 262.80792 * 12 9 8 14 14 C 1.53000 * 110.41627 * 140.63299 * 12 9 8 15 15 C 1.52997 * 109.46873 * 177.87639 * 14 12 9 16 16 N 1.46508 * 109.46691 * 180.02562 * 15 14 12 17 17 C 1.36936 * 119.99644 * 180.02562 * 16 15 14 18 18 H 1.08000 * 120.00137 * 359.97438 * 17 16 15 19 19 C 1.38813 * 119.99660 * 179.97438 * 17 16 15 20 20 N 1.31618 * 120.00264 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 120.00068 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47245 * 59.99891 * 21 19 17 23 23 H 1.48493 * 109.47315 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.46997 * 300.00445 * 21 19 17 25 25 C 1.47486 * 127.03494 * 179.72798 * 7 5 4 26 26 H 1.08997 * 109.47279 * 264.38729 * 1 2 3 27 27 H 1.09007 * 109.47488 * 24.38726 * 1 2 3 28 28 H 1.09002 * 109.47448 * 144.38783 * 1 2 3 29 29 H 1.08992 * 109.47504 * 270.00029 * 3 2 1 30 30 H 1.09007 * 109.46845 * 30.00598 * 3 2 1 31 31 H 1.09009 * 109.46949 * 149.99821 * 3 2 1 32 32 H 1.08005 * 119.99863 * 172.84013 * 4 2 1 33 33 H 1.09001 * 110.66246 * 337.77715 * 8 7 5 34 34 H 1.08998 * 110.66003 * 100.88778 * 8 7 5 35 35 H 1.09008 * 109.46911 * 173.55720 * 11 9 8 36 36 H 1.08991 * 109.47409 * 293.56539 * 11 9 8 37 37 H 1.09004 * 109.46849 * 53.57014 * 11 9 8 38 38 H 1.09000 * 109.47409 * 297.87669 * 14 12 9 39 39 H 1.08995 * 109.46943 * 57.87489 * 14 12 9 40 40 H 1.09005 * 109.47287 * 299.99771 * 15 14 12 41 41 H 1.08995 * 109.47459 * 60.00166 * 15 14 12 42 42 H 0.96999 * 120.00047 * 359.97438 * 16 15 14 43 43 H 0.96996 * 120.00287 * 179.97438 * 20 19 17 44 44 H 1.09002 * 109.91327 * 273.87188 * 25 7 5 45 45 H 1.08997 * 109.91773 * 34.95924 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2604 1.3051 0.0000 4 6 2.1719 -1.1518 -0.0005 5 6 1.4450 -2.4208 0.1578 6 8 0.2529 -2.4128 0.3980 7 7 2.1013 -3.5922 0.0420 8 6 3.5403 -3.7834 -0.2521 9 6 3.5532 -4.9994 -1.2066 10 1 3.3223 -4.6918 -2.2265 11 6 4.9020 -5.7196 -1.1522 12 6 2.4299 -5.8969 -0.6379 13 1 2.8510 -6.6664 0.0091 14 6 1.6319 -6.5381 -1.7750 15 6 0.5618 -7.4615 -1.1894 16 7 -0.2019 -8.0760 -2.2783 17 6 -1.2204 -8.9461 -1.9941 18 1 -1.4604 -9.1796 -0.9673 19 6 -1.9444 -9.5278 -3.0257 20 7 -1.6522 -9.2428 -4.2770 21 14 -3.3333 -10.7153 -2.6382 22 1 -4.3636 -10.0230 -1.8230 23 1 -3.9431 -11.1942 -3.9046 24 1 -2.7971 -11.8733 -1.8786 25 6 1.5321 -4.9463 0.1759 26 1 -0.3633 -0.1005 1.0227 27 1 -0.3634 0.9360 -0.4243 28 1 -0.3634 -0.8355 -0.5984 29 1 2.4421 1.6198 -1.0276 30 1 1.6713 2.0647 0.5140 31 1 3.2129 1.1747 0.5139 32 1 3.2456 -1.1554 -0.1171 33 1 3.9522 -2.9033 -0.7461 34 1 4.0929 -4.0073 0.6603 35 1 4.8494 -6.6344 -1.7426 36 1 5.6775 -5.0697 -1.5572 37 1 5.1397 -5.9681 -0.1178 38 1 1.1540 -5.7585 -2.3682 39 1 2.3037 -7.1167 -2.4090 40 1 1.0397 -8.2412 -0.5962 41 1 -0.1100 -6.8830 -0.5554 42 1 0.0134 -7.8659 -3.2004 43 1 -2.1578 -9.6496 -4.9979 44 1 1.5286 -5.2455 1.2240 45 1 0.5160 -4.9626 -0.2181 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001103844713.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:25:56 Heat of formation + Delta-G solvation = -20.957505 kcal Electronic energy + Delta-G solvation = -21971.570294 eV Core-core repulsion = 18796.138872 eV Total energy + Delta-G solvation = -3175.431422 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.24812 -38.36799 -35.50887 -35.05120 -33.18234 -32.05357 -30.25500 -28.61985 -27.94917 -26.62047 -26.34893 -24.21956 -22.54400 -20.95287 -20.46283 -19.63357 -18.18636 -17.28214 -16.94921 -16.11884 -15.36589 -14.75733 -14.63962 -14.39217 -14.30264 -13.95906 -13.65041 -13.48048 -13.15569 -13.02207 -12.87674 -12.64033 -12.51223 -12.36038 -12.06682 -11.93162 -11.73740 -11.64662 -11.34341 -11.10711 -10.95816 -10.78705 -10.49943 -10.36867 -10.28348 -9.93194 -9.61083 -9.56245 -9.31052 -8.80686 -8.57059 -6.85933 -5.70920 -2.99261 1.23798 3.00016 3.26960 3.48462 3.52203 3.53691 4.34777 4.44035 4.59427 4.62897 4.71724 4.74837 4.96701 5.17792 5.18409 5.21391 5.27543 5.31250 5.38728 5.46800 5.53241 5.55987 5.58770 5.64107 5.72622 5.76608 5.84424 5.90050 5.95467 6.04498 6.09280 6.14467 6.20844 6.31768 6.37446 6.42079 6.45546 6.52754 6.90915 6.95875 7.59465 7.74926 8.24076 8.48365 9.59038 10.17971 10.52473 11.52194 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.018348 B = 0.003451 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.715348 B = 8111.002184 C = 9179.060262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.034 4.034 3 C -0.126 4.126 4 C -0.232 4.232 5 C 0.561 3.439 6 O -0.539 6.539 7 N -0.618 5.618 8 C 0.105 3.895 9 C -0.104 4.104 10 H 0.084 0.916 11 C -0.140 4.140 12 C -0.091 4.091 13 H 0.086 0.914 14 C -0.116 4.116 15 C 0.151 3.849 16 N -0.734 5.734 17 C -0.238 4.238 18 H 0.069 0.931 19 C -0.015 4.015 20 N -0.935 5.935 21 Si 0.907 3.093 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.286 1.286 25 C 0.108 3.892 26 H 0.079 0.921 27 H 0.054 0.946 28 H 0.091 0.909 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.124 0.876 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.063 0.937 36 H 0.055 0.945 37 H 0.057 0.943 38 H 0.062 0.938 39 H 0.066 0.934 40 H 0.017 0.983 41 H 0.019 0.981 42 H 0.383 0.617 43 H 0.255 0.745 44 H 0.063 0.937 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.634 18.602 8.748 25.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.036 4.036 3 C -0.183 4.183 4 C -0.253 4.253 5 C 0.353 3.647 6 O -0.418 6.418 7 N -0.352 5.352 8 C -0.019 4.019 9 C -0.123 4.123 10 H 0.103 0.897 11 C -0.198 4.198 12 C -0.111 4.111 13 H 0.104 0.896 14 C -0.154 4.154 15 C 0.024 3.976 16 N -0.378 5.378 17 C -0.370 4.370 18 H 0.087 0.913 19 C -0.211 4.211 20 N -0.584 5.584 21 Si 0.738 3.262 22 H -0.212 1.212 23 H -0.217 1.217 24 H -0.213 1.213 25 C -0.015 4.015 26 H 0.097 0.903 27 H 0.073 0.927 28 H 0.109 0.891 29 H 0.096 0.904 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.142 0.858 33 H 0.096 0.904 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.035 0.965 41 H 0.037 0.963 42 H 0.216 0.784 43 H 0.065 0.935 44 H 0.082 0.918 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 14.817 18.583 8.984 25.408 hybrid contribution -0.546 -0.710 -0.171 0.912 sum 14.271 17.873 8.813 24.511 Atomic orbital electron populations 1.21172 0.90797 1.02576 1.03702 1.22573 0.96993 0.94359 0.89655 1.20998 0.99994 0.94418 1.02853 1.22332 1.00109 0.91832 1.11055 1.18173 0.86370 0.82981 0.77143 1.90785 1.14913 1.86916 1.49207 1.48689 1.10066 1.05757 1.70672 1.22569 0.82079 0.98549 0.98662 1.22307 0.95583 0.94763 0.99655 0.89719 1.21735 0.95360 1.00588 1.02119 1.22148 0.94870 0.96573 0.97488 0.89599 1.21785 0.97758 0.99141 0.96756 1.20704 0.91691 0.93399 0.91837 1.42360 1.38430 1.52984 1.04013 1.19207 1.07736 1.17469 0.92544 0.91256 1.24742 1.00122 1.01031 0.95223 1.69650 1.43300 1.47679 0.97795 0.86257 0.82207 0.80964 0.76725 1.21247 1.21692 1.21290 1.22209 0.99147 0.80337 0.99775 0.90303 0.92681 0.89060 0.90442 0.90871 0.91190 0.85825 0.90401 0.90994 0.91756 0.92596 0.92434 0.91894 0.91562 0.96475 0.96301 0.78358 0.93514 0.91846 0.89582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.40 8.47 36.00 0.30 -1.09 16 2 C -0.03 -0.33 6.11 -101.17 -0.62 -0.95 16 3 C -0.13 -0.79 10.01 36.01 0.36 -0.43 16 4 C -0.23 -2.50 9.07 -37.81 -0.34 -2.84 16 5 C 0.56 8.05 7.69 -12.67 -0.10 7.95 16 6 O -0.54 -9.58 13.62 5.27 0.07 -9.51 16 7 N -0.62 -8.04 3.29 -171.37 -0.56 -8.61 16 8 C 0.10 0.98 6.31 -2.31 -0.01 0.97 16 9 C -0.10 -1.05 3.20 -88.93 -0.28 -1.34 16 10 H 0.08 0.93 7.87 -51.93 -0.41 0.52 16 11 C -0.14 -1.15 9.16 37.16 0.34 -0.81 16 12 C -0.09 -1.16 2.61 -89.24 -0.23 -1.39 16 13 H 0.09 1.02 7.85 -51.93 -0.41 0.61 16 14 C -0.12 -1.91 4.53 -26.73 -0.12 -2.03 16 15 C 0.15 3.15 6.08 -4.04 -0.02 3.12 16 16 N -0.73 -19.47 5.60 -59.90 -0.34 -19.81 16 17 C -0.24 -6.96 9.99 -15.06 -0.15 -7.11 16 18 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 19 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 20 N -0.94 -29.15 13.06 55.49 0.72 -28.43 16 21 Si 0.91 23.10 29.55 -169.99 -5.02 18.07 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 23 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 25 C 0.11 1.52 6.15 -2.98 -0.02 1.50 16 26 H 0.08 0.92 8.04 -51.93 -0.42 0.50 16 27 H 0.05 0.48 8.09 -51.93 -0.42 0.06 16 28 H 0.09 1.27 6.14 -51.93 -0.32 0.95 16 29 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.40 8.12 -51.92 -0.42 -0.03 16 31 H 0.07 0.37 8.07 -51.92 -0.42 -0.05 16 32 H 0.12 1.01 6.77 -52.48 -0.36 0.65 16 33 H 0.08 0.60 6.73 -51.93 -0.35 0.25 16 34 H 0.07 0.58 8.01 -51.93 -0.42 0.17 16 35 H 0.06 0.58 8.14 -51.92 -0.42 0.15 16 36 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.06 0.43 8.10 -51.93 -0.42 0.01 16 38 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 39 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.02 0.41 6.88 -51.93 -0.36 0.05 16 42 H 0.38 10.62 7.67 -40.82 -0.31 10.31 16 43 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 44 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.09 1.48 6.65 -51.93 -0.35 1.13 16 LS Contribution 359.43 15.07 5.42 5.42 Total: -1.00 -33.97 359.43 -8.58 -42.55 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -7.87 Total: 5.32 kcal Atomic # 6 Polarization: -4.01 SS G_CDS: -0.99 Total: -5.00 kcal Atomic # 7 Polarization: -56.67 SS G_CDS: -0.18 Total: -56.84 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: 0.07 Total: -9.51 kcal Atomic # 14 Polarization: 23.10 SS G_CDS: -5.02 Total: 18.07 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.97 -8.58 -42.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103844713.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.591 kcal (2) G-P(sol) polarization free energy of solvation -33.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds