Wall clock time and date at job start Tue Mar 31 2020 02:25:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.50701 * 119.99972 * 2 1 4 4 C 1.32995 * 119.99850 * 180.02562 * 2 1 3 5 5 C 1.47096 * 120.00242 * 352.83716 * 4 2 1 6 6 O 1.21610 * 119.99852 * 353.99674 * 5 4 2 7 7 N 1.34770 * 120.00121 * 174.27164 * 5 4 2 8 8 C 1.48122 * 127.03428 * 359.40735 * 7 5 4 9 9 C 1.54592 * 103.42489 * 219.28776 * 8 7 5 10 10 H 1.09005 * 110.73039 * 81.24119 * 9 8 7 11 11 C 1.53001 * 110.83351 * 204.44398 * 9 8 7 12 12 C 1.54617 * 102.91477 * 322.86807 * 9 8 7 13 13 H 1.09000 * 110.33084 * 262.80792 * 12 9 8 14 14 C 1.53000 * 110.41627 * 140.63299 * 12 9 8 15 15 C 1.52997 * 109.46873 * 177.87639 * 14 12 9 16 16 N 1.46508 * 109.46691 * 180.02562 * 15 14 12 17 17 C 1.36936 * 119.99644 * 180.02562 * 16 15 14 18 18 H 1.08000 * 120.00137 * 359.97438 * 17 16 15 19 19 C 1.38813 * 119.99660 * 179.97438 * 17 16 15 20 20 N 1.31618 * 120.00264 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 120.00068 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47245 * 59.99891 * 21 19 17 23 23 H 1.48493 * 109.47315 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.46997 * 300.00445 * 21 19 17 25 25 C 1.47486 * 127.03494 * 179.72798 * 7 5 4 26 26 H 1.08997 * 109.47279 * 264.38729 * 1 2 3 27 27 H 1.09007 * 109.47488 * 24.38726 * 1 2 3 28 28 H 1.09002 * 109.47448 * 144.38783 * 1 2 3 29 29 H 1.08992 * 109.47504 * 270.00029 * 3 2 1 30 30 H 1.09007 * 109.46845 * 30.00598 * 3 2 1 31 31 H 1.09009 * 109.46949 * 149.99821 * 3 2 1 32 32 H 1.08005 * 119.99863 * 172.84013 * 4 2 1 33 33 H 1.09001 * 110.66246 * 337.77715 * 8 7 5 34 34 H 1.08998 * 110.66003 * 100.88778 * 8 7 5 35 35 H 1.09008 * 109.46911 * 173.55720 * 11 9 8 36 36 H 1.08991 * 109.47409 * 293.56539 * 11 9 8 37 37 H 1.09004 * 109.46849 * 53.57014 * 11 9 8 38 38 H 1.09000 * 109.47409 * 297.87669 * 14 12 9 39 39 H 1.08995 * 109.46943 * 57.87489 * 14 12 9 40 40 H 1.09005 * 109.47287 * 299.99771 * 15 14 12 41 41 H 1.08995 * 109.47459 * 60.00166 * 15 14 12 42 42 H 0.96999 * 120.00047 * 359.97438 * 16 15 14 43 43 H 0.96996 * 120.00287 * 179.97438 * 20 19 17 44 44 H 1.09002 * 109.91327 * 273.87188 * 25 7 5 45 45 H 1.08997 * 109.91773 * 34.95924 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2604 1.3051 0.0000 4 6 2.1719 -1.1518 -0.0005 5 6 1.4450 -2.4208 0.1578 6 8 0.2529 -2.4128 0.3980 7 7 2.1013 -3.5922 0.0420 8 6 3.5403 -3.7834 -0.2521 9 6 3.5532 -4.9994 -1.2066 10 1 3.3223 -4.6918 -2.2265 11 6 4.9020 -5.7196 -1.1522 12 6 2.4299 -5.8969 -0.6379 13 1 2.8510 -6.6664 0.0091 14 6 1.6319 -6.5381 -1.7750 15 6 0.5618 -7.4615 -1.1894 16 7 -0.2019 -8.0760 -2.2783 17 6 -1.2204 -8.9461 -1.9941 18 1 -1.4604 -9.1796 -0.9673 19 6 -1.9444 -9.5278 -3.0257 20 7 -1.6522 -9.2428 -4.2770 21 14 -3.3333 -10.7153 -2.6382 22 1 -4.3636 -10.0230 -1.8230 23 1 -3.9431 -11.1942 -3.9046 24 1 -2.7971 -11.8733 -1.8786 25 6 1.5321 -4.9463 0.1759 26 1 -0.3633 -0.1005 1.0227 27 1 -0.3634 0.9360 -0.4243 28 1 -0.3634 -0.8355 -0.5984 29 1 2.4421 1.6198 -1.0276 30 1 1.6713 2.0647 0.5140 31 1 3.2129 1.1747 0.5139 32 1 3.2456 -1.1554 -0.1171 33 1 3.9522 -2.9033 -0.7461 34 1 4.0929 -4.0073 0.6603 35 1 4.8494 -6.6344 -1.7426 36 1 5.6775 -5.0697 -1.5572 37 1 5.1397 -5.9681 -0.1178 38 1 1.1540 -5.7585 -2.3682 39 1 2.3037 -7.1167 -2.4090 40 1 1.0397 -8.2412 -0.5962 41 1 -0.1100 -6.8830 -0.5554 42 1 0.0134 -7.8659 -3.2004 43 1 -2.1578 -9.6496 -4.9979 44 1 1.5286 -5.2455 1.2240 45 1 0.5160 -4.9626 -0.2181 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001103844713.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:25:55 Heat of formation + Delta-G solvation = -42.450970 kcal Electronic energy + Delta-G solvation = -21972.502321 eV Core-core repulsion = 18796.138872 eV Total energy + Delta-G solvation = -3176.363449 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.27398 -39.42220 -36.91345 -36.28333 -34.60430 -33.46940 -31.86266 -29.71328 -28.66363 -27.92574 -27.14124 -25.88414 -24.16392 -22.26244 -21.41600 -20.73401 -19.18578 -19.06148 -18.18915 -17.17311 -16.66634 -16.34000 -15.88557 -15.54356 -15.35977 -15.26553 -14.93128 -14.80810 -14.34001 -14.22812 -13.82829 -13.53176 -13.43759 -13.21369 -13.16863 -13.03251 -12.87507 -12.73181 -12.64955 -12.39726 -12.37388 -12.31577 -12.16095 -11.91453 -11.62451 -11.49045 -11.24053 -10.94796 -10.63670 -10.16318 -9.56427 -9.04459 -7.98804 -5.28559 0.39083 1.43835 1.48082 1.54184 2.03517 2.27520 2.53212 3.34132 3.44633 3.57012 3.65630 3.81720 3.91311 4.13088 4.21364 4.27929 4.31250 4.42244 4.48035 4.55985 4.60350 4.65415 4.67138 4.74093 4.75072 4.78195 4.87744 4.90212 4.94735 4.97395 5.06128 5.15926 5.18332 5.27552 5.28828 5.34130 5.40563 5.45060 5.51339 5.58054 5.67903 6.23699 6.61120 7.19176 7.29107 8.04953 8.28564 9.24836 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.018348 B = 0.003451 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.715348 B = 8111.002184 C = 9179.060262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.027 4.027 3 C -0.121 4.121 4 C -0.243 4.243 5 C 0.546 3.454 6 O -0.590 6.590 7 N -0.622 5.622 8 C 0.106 3.894 9 C -0.097 4.097 10 H 0.074 0.926 11 C -0.135 4.135 12 C -0.082 4.082 13 H 0.103 0.897 14 C -0.101 4.101 15 C 0.150 3.850 16 N -0.749 5.749 17 C -0.252 4.252 18 H 0.074 0.926 19 C -0.076 4.076 20 N -0.970 5.970 21 Si 0.977 3.023 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.274 1.274 25 C 0.107 3.893 26 H 0.067 0.933 27 H 0.078 0.922 28 H 0.055 0.945 29 H 0.092 0.908 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.158 0.842 33 H 0.104 0.896 34 H 0.095 0.905 35 H 0.054 0.946 36 H 0.075 0.925 37 H 0.069 0.931 38 H 0.043 0.957 39 H 0.071 0.929 40 H 0.026 0.974 41 H 0.010 0.990 42 H 0.373 0.627 43 H 0.253 0.747 44 H 0.069 0.931 45 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.140 19.703 9.699 28.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.029 4.029 3 C -0.177 4.177 4 C -0.264 4.264 5 C 0.340 3.660 6 O -0.474 6.474 7 N -0.354 5.354 8 C -0.016 4.016 9 C -0.116 4.116 10 H 0.092 0.908 11 C -0.193 4.193 12 C -0.101 4.101 13 H 0.121 0.879 14 C -0.139 4.139 15 C 0.024 3.976 16 N -0.392 5.392 17 C -0.384 4.384 18 H 0.092 0.908 19 C -0.269 4.269 20 N -0.621 5.621 21 Si 0.805 3.195 22 H -0.206 1.206 23 H -0.217 1.217 24 H -0.200 1.200 25 C -0.016 4.016 26 H 0.085 0.915 27 H 0.097 0.903 28 H 0.074 0.926 29 H 0.111 0.889 30 H 0.101 0.899 31 H 0.106 0.894 32 H 0.175 0.825 33 H 0.122 0.878 34 H 0.113 0.887 35 H 0.073 0.927 36 H 0.094 0.906 37 H 0.088 0.912 38 H 0.062 0.938 39 H 0.089 0.911 40 H 0.044 0.956 41 H 0.028 0.972 42 H 0.205 0.795 43 H 0.062 0.938 44 H 0.087 0.913 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 17.379 19.687 9.967 28.088 hybrid contribution -1.357 -1.008 -0.439 1.747 sum 16.022 18.679 9.528 26.389 Atomic orbital electron populations 1.21106 0.92532 1.02245 1.02495 1.22908 0.96173 0.96044 0.87813 1.21059 1.00318 0.92213 1.04137 1.22430 1.01428 0.90016 1.12494 1.18974 0.86132 0.84461 0.76445 1.90762 1.17210 1.87727 1.51660 1.48836 1.11736 1.04844 1.69971 1.22831 0.79917 0.99163 0.99673 1.22275 0.95593 0.94635 0.99140 0.90764 1.21710 0.94286 1.00277 1.02990 1.22082 0.94995 0.96896 0.96148 0.87913 1.21620 0.96729 0.97779 0.97809 1.20873 0.92193 0.93908 0.90638 1.42608 1.38699 1.53052 1.04796 1.19630 1.08317 1.17599 0.92845 0.90834 1.25635 1.02928 1.03202 0.95094 1.69813 1.44589 1.49035 0.98655 0.85164 0.78957 0.78864 0.76505 1.20596 1.21740 1.19966 1.22095 0.97513 0.81974 1.00046 0.91478 0.90350 0.92583 0.88941 0.89859 0.89443 0.82486 0.87821 0.88668 0.92690 0.90560 0.91152 0.93819 0.91083 0.95609 0.97234 0.79546 0.93848 0.91289 0.93782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.89 8.47 71.23 0.60 -2.28 16 2 C -0.03 -0.50 6.11 -17.62 -0.11 -0.60 16 3 C -0.12 -1.11 10.01 71.24 0.71 -0.39 16 4 C -0.24 -4.83 9.07 23.43 0.21 -4.62 16 5 C 0.55 15.90 7.69 86.57 0.67 16.56 16 6 O -0.59 -22.47 13.62 -4.06 -0.06 -22.52 16 7 N -0.62 -15.89 3.29 -814.34 -2.68 -18.57 16 8 C 0.11 1.67 6.31 86.61 0.55 2.21 16 9 C -0.10 -1.76 3.20 -9.70 -0.03 -1.79 16 10 H 0.07 1.53 7.87 -2.38 -0.02 1.51 16 11 C -0.14 -1.76 9.16 71.98 0.66 -1.10 16 12 C -0.08 -2.01 2.61 -9.90 -0.03 -2.04 16 13 H 0.10 2.23 7.85 -2.39 -0.02 2.21 16 14 C -0.10 -3.39 4.53 30.59 0.14 -3.25 16 15 C 0.15 6.42 6.08 86.38 0.53 6.95 16 16 N -0.75 -40.95 5.60 -343.44 -1.92 -42.87 16 17 C -0.25 -14.99 9.99 84.03 0.84 -14.15 16 18 H 0.07 4.20 7.83 -2.91 -0.02 4.18 16 19 C -0.08 -4.60 5.50 84.86 0.47 -4.13 16 20 N -0.97 -61.75 13.06 21.65 0.28 -61.46 16 21 Si 0.98 47.95 29.55 68.60 2.03 49.98 16 22 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 23 H -0.29 -14.21 7.11 99.48 0.71 -13.51 16 24 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 25 C 0.11 3.09 6.15 86.53 0.53 3.62 16 26 H 0.07 1.65 8.04 -2.39 -0.02 1.63 16 27 H 0.08 1.33 8.09 -2.38 -0.02 1.31 16 28 H 0.06 1.69 6.14 -2.39 -0.01 1.67 16 29 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.08 0.63 8.12 -2.38 -0.02 0.61 16 31 H 0.09 0.55 8.07 -2.38 -0.02 0.53 16 32 H 0.16 1.96 6.77 -2.91 -0.02 1.94 16 33 H 0.10 1.15 6.73 -2.39 -0.02 1.14 16 34 H 0.10 1.14 8.01 -2.39 -0.02 1.12 16 35 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 36 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.07 0.76 8.10 -2.39 -0.02 0.75 16 38 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 40 H 0.03 1.07 8.14 -2.38 -0.02 1.05 16 41 H 0.01 0.44 6.88 -2.39 -0.02 0.42 16 42 H 0.37 21.47 7.67 -92.71 -0.71 20.76 16 43 H 0.25 15.49 8.31 -92.71 -0.77 14.72 16 44 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 45 H 0.04 1.63 6.65 -2.39 -0.02 1.62 16 Total: -1.00 -77.27 359.43 3.63 -73.64 By element: Atomic # 1 Polarization: 26.57 SS G_CDS: 0.24 Total: 26.82 kcal Atomic # 6 Polarization: -10.74 SS G_CDS: 5.74 Total: -5.00 kcal Atomic # 7 Polarization: -118.58 SS G_CDS: -4.32 Total: -122.91 kcal Atomic # 8 Polarization: -22.47 SS G_CDS: -0.06 Total: -22.52 kcal Atomic # 14 Polarization: 47.95 SS G_CDS: 2.03 Total: 49.98 kcal Total: -77.27 3.63 -73.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103844713.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.186 kcal (2) G-P(sol) polarization free energy of solvation -77.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds