Wall clock time and date at job start Tue Mar 31 2020 01:51:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 115.54401 * 2 1 4 4 C 1.53066 * 117.49418 * 214.27115 * 2 1 3 5 5 C 1.52998 * 117.49880 * 145.66622 * 2 1 3 6 6 H 1.09002 * 117.49343 * 214.97970 * 5 2 1 7 7 C 1.50696 * 117.50182 * 359.97438 * 5 2 1 8 8 O 1.21284 * 119.99999 * 359.91259 * 7 5 2 9 9 N 1.34778 * 120.00124 * 179.91254 * 7 5 2 10 10 C 1.46495 * 120.00029 * 180.02562 * 9 7 5 11 11 C 1.52994 * 109.47168 * 176.62660 * 10 9 7 12 12 N 1.46498 * 109.47377 * 54.62713 * 11 10 9 13 13 C 1.36940 * 119.99899 * 62.83424 * 12 11 10 14 14 H 1.07998 * 119.99919 * 354.26050 * 13 12 11 15 15 C 1.38812 * 119.99833 * 174.25591 * 13 12 11 16 16 N 1.31617 * 120.00261 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 120.00048 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.46997 * 90.00125 * 17 15 13 19 19 H 1.48500 * 109.47451 * 210.00427 * 17 15 13 20 20 H 1.48504 * 109.47264 * 330.00759 * 17 15 13 21 21 C 1.53003 * 109.47129 * 294.62543 * 11 10 9 22 22 C 1.53005 * 109.46842 * 179.97438 * 21 11 10 23 23 C 1.53003 * 109.47261 * 60.00488 * 22 21 11 24 24 C 1.53003 * 109.46794 * 299.99541 * 23 22 21 25 25 C 1.53003 * 109.47244 * 174.62865 * 11 10 9 26 26 H 1.08997 * 109.47420 * 274.32949 * 1 2 3 27 27 H 1.08996 * 109.47543 * 34.33403 * 1 2 3 28 28 H 1.09003 * 109.47002 * 154.33290 * 1 2 3 29 29 H 1.09004 * 117.51569 * 145.03800 * 4 2 1 30 30 H 1.09004 * 117.49728 * 359.97438 * 4 2 1 31 31 H 0.96993 * 119.99845 * 359.97438 * 9 7 5 32 32 H 1.09000 * 109.47262 * 296.63005 * 10 9 7 33 33 H 1.09005 * 109.47386 * 56.62551 * 10 9 7 34 34 H 0.96999 * 120.00261 * 242.84181 * 12 11 10 35 35 H 0.97002 * 120.00222 * 179.97438 * 16 15 13 36 36 H 1.08993 * 109.47236 * 299.99716 * 21 11 10 37 37 H 1.08997 * 109.46926 * 60.00555 * 21 11 10 38 38 H 1.09002 * 109.47227 * 299.99767 * 22 21 11 39 39 H 1.09009 * 109.46816 * 180.02562 * 22 21 11 40 40 H 1.08998 * 109.46687 * 179.97438 * 23 22 21 41 41 H 1.08995 * 109.46982 * 59.99656 * 23 22 21 42 42 H 1.09002 * 109.47020 * 300.00308 * 24 23 22 43 43 H 1.08993 * 109.46965 * 179.97438 * 24 23 22 44 44 H 1.09008 * 109.46692 * 299.99444 * 25 11 10 45 45 H 1.08993 * 109.47499 * 60.00052 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0000 0.9835 0.0000 4 6 2.2366 -1.1220 -0.7646 5 6 2.2364 -1.1207 0.7654 6 1 3.1715 -0.8745 1.2686 7 6 1.3721 -2.1397 1.4622 8 8 0.1639 -2.0512 1.4043 9 7 1.9417 -3.1494 2.1497 10 6 1.1014 -4.1403 2.8265 11 6 1.9883 -5.2163 3.4560 12 7 2.9774 -4.5831 4.3318 13 6 2.5665 -3.8774 5.4310 14 1 1.5135 -3.7088 5.6018 15 6 3.5033 -3.3789 6.3258 16 7 4.7866 -3.5840 6.1174 17 14 2.9429 -2.4156 7.8249 18 1 2.7230 -3.3487 8.9591 19 1 3.9849 -1.4242 8.1944 20 1 1.6749 -1.7081 7.5132 21 6 2.7080 -5.9940 2.3523 22 6 3.5954 -7.0697 2.9820 23 6 2.7301 -8.0296 3.8010 24 6 2.0104 -7.2519 4.9047 25 6 1.1226 -6.1761 4.2747 26 1 -0.3634 0.0776 1.0247 27 1 -0.3634 0.8485 -0.5796 28 1 -0.3633 -0.9263 -0.4451 29 1 3.1719 -0.8770 -1.2680 30 1 1.6113 -1.8601 -1.2670 31 1 2.9079 -3.2203 2.1957 32 1 0.5168 -3.6500 3.6050 33 1 0.4288 -4.6013 2.1031 34 1 3.9234 -4.6636 4.1329 35 1 5.4413 -3.2353 6.7425 36 1 1.9721 -6.4652 1.7008 37 1 3.3248 -5.3103 1.7691 38 1 4.3314 -6.5981 3.6333 39 1 4.1085 -7.6234 2.1956 40 1 3.3624 -8.7961 4.2492 41 1 1.9943 -8.5011 3.1497 42 1 2.7464 -6.7803 5.5560 43 1 1.3937 -7.9356 5.4879 44 1 0.6099 -5.6220 5.0611 45 1 0.3867 -6.6473 3.6232 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115389483.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:51:27 Heat of formation + Delta-G solvation = -37.660438 kcal Electronic energy + Delta-G solvation = -23350.669164 eV Core-core repulsion = 20174.513448 eV Total energy + Delta-G solvation = -3176.155716 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.16979 -40.08314 -37.51540 -35.80066 -35.02424 -32.82345 -31.55740 -30.40762 -29.43557 -27.13996 -25.71338 -24.45152 -23.37368 -22.05659 -21.61359 -20.78409 -19.77088 -19.00990 -18.04176 -16.93751 -16.71740 -16.28457 -15.90930 -15.86890 -15.45964 -15.13274 -14.86775 -14.57514 -14.32058 -14.00435 -13.51530 -13.49855 -13.40963 -13.24605 -13.08848 -12.90763 -12.81708 -12.60170 -12.50760 -12.33970 -12.06661 -11.88714 -11.68456 -11.31841 -11.15189 -11.09022 -11.00894 -10.78537 -10.70445 -10.43809 -9.83526 -8.90837 -7.88482 -5.12582 1.43131 1.46021 1.51266 1.63381 2.39166 2.58200 2.89705 3.44360 3.71553 3.81301 3.87794 3.93702 3.99355 4.03381 4.13883 4.28884 4.40105 4.48415 4.49232 4.67045 4.74829 4.76417 4.81179 4.83446 4.90837 4.92292 4.96553 4.98947 5.07161 5.08872 5.17910 5.19829 5.21738 5.46139 5.49396 5.50936 5.54804 5.60315 5.62319 5.73645 5.80864 6.34755 6.74476 7.39905 7.43550 8.16509 8.42806 9.33946 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.012844 B = 0.006383 C = 0.004877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.538505 B = 4385.625186 C = 5740.150109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.124 4.124 3 H 0.131 0.869 4 C -0.128 4.128 5 C -0.209 4.209 6 H 0.130 0.870 7 C 0.530 3.470 8 O -0.584 6.584 9 N -0.696 5.696 10 C 0.124 3.876 11 C 0.189 3.811 12 N -0.708 5.708 13 C -0.206 4.206 14 H 0.059 0.941 15 C -0.063 4.063 16 N -0.960 5.960 17 Si 0.945 3.055 18 H -0.293 1.293 19 H -0.299 1.299 20 H -0.284 1.284 21 C -0.106 4.106 22 C -0.112 4.112 23 C -0.107 4.107 24 C -0.106 4.106 25 C -0.114 4.114 26 H 0.039 0.961 27 H 0.068 0.932 28 H 0.046 0.954 29 H 0.131 0.869 30 H 0.093 0.907 31 H 0.405 0.595 32 H 0.027 0.973 33 H 0.063 0.937 34 H 0.377 0.623 35 H 0.247 0.753 36 H 0.082 0.918 37 H 0.061 0.939 38 H 0.043 0.957 39 H 0.075 0.925 40 H 0.059 0.941 41 H 0.074 0.926 42 H 0.040 0.960 43 H 0.056 0.944 44 H 0.037 0.963 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.028 -2.174 -13.812 14.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.142 4.142 3 H 0.149 0.851 4 C -0.165 4.165 5 C -0.230 4.230 6 H 0.148 0.852 7 C 0.317 3.683 8 O -0.466 6.466 9 N -0.345 5.345 10 C -0.002 4.002 11 C 0.099 3.901 12 N -0.348 5.348 13 C -0.338 4.338 14 H 0.077 0.923 15 C -0.256 4.256 16 N -0.611 5.611 17 Si 0.778 3.222 18 H -0.220 1.220 19 H -0.226 1.226 20 H -0.210 1.210 21 C -0.144 4.144 22 C -0.150 4.150 23 C -0.145 4.145 24 C -0.144 4.144 25 C -0.154 4.154 26 H 0.058 0.942 27 H 0.087 0.913 28 H 0.065 0.935 29 H 0.149 0.851 30 H 0.111 0.889 31 H 0.241 0.759 32 H 0.046 0.954 33 H 0.081 0.919 34 H 0.211 0.789 35 H 0.056 0.944 36 H 0.100 0.900 37 H 0.080 0.920 38 H 0.062 0.938 39 H 0.094 0.906 40 H 0.078 0.922 41 H 0.092 0.908 42 H 0.059 0.941 43 H 0.075 0.925 44 H 0.056 0.944 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.979 -2.070 -13.697 14.413 hybrid contribution 0.556 0.679 1.739 1.948 sum -3.424 -1.391 -11.958 12.516 Atomic orbital electron populations 1.21245 0.92777 1.01179 1.00977 1.22497 0.95743 0.94571 1.01435 0.85089 1.23159 1.03619 1.00541 0.89211 1.22322 1.02335 1.01308 0.97078 0.85231 1.20197 0.88012 0.81587 0.78458 1.90630 1.16086 1.75875 1.63986 1.45770 1.10959 1.26872 1.50943 1.21683 0.93434 0.90320 0.94797 1.20025 0.89668 0.90074 0.90367 1.42451 1.04429 1.60757 1.27189 1.19175 0.91579 1.23544 0.99508 0.92269 1.25143 0.95575 1.03799 1.01055 1.69745 0.99908 1.52683 1.38784 0.85555 0.76616 0.78436 0.81636 1.22036 1.22564 1.20957 1.21646 0.99088 0.97315 0.96360 1.21441 0.97833 0.96616 0.99105 1.21446 0.98748 0.97210 0.97053 1.21310 0.98486 0.96545 0.98026 1.21791 0.97742 0.96844 0.98987 0.94216 0.91310 0.93476 0.85098 0.88867 0.75883 0.95417 0.91871 0.78911 0.94428 0.89994 0.92012 0.93817 0.90648 0.92220 0.90778 0.94089 0.92495 0.94434 0.90988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.75 8.43 71.98 0.61 -2.15 16 2 C -0.12 -2.84 6.41 -10.77 -0.07 -2.91 16 3 H 0.13 2.38 8.14 -2.39 -0.02 2.36 16 4 C -0.13 -2.56 9.88 30.62 0.30 -2.26 16 5 C -0.21 -5.58 6.19 -11.54 -0.07 -5.65 16 6 H 0.13 3.23 8.14 -2.39 -0.02 3.21 16 7 C 0.53 18.39 7.59 87.66 0.67 19.06 16 8 O -0.58 -23.56 13.10 -3.04 -0.04 -23.60 16 9 N -0.70 -24.11 5.09 -463.08 -2.36 -26.47 16 10 C 0.12 4.51 4.37 86.38 0.38 4.89 16 11 C 0.19 6.60 0.41 3.60 0.00 6.60 16 12 N -0.71 -30.93 3.40 -303.35 -1.03 -31.96 16 13 C -0.21 -10.57 8.70 84.03 0.73 -9.84 16 14 H 0.06 3.13 6.77 -2.91 -0.02 3.11 16 15 C -0.06 -3.46 5.50 84.86 0.47 -3.00 16 16 N -0.96 -55.36 13.07 21.65 0.28 -55.08 16 17 Si 0.95 46.16 29.55 68.60 2.03 48.19 16 18 H -0.29 -14.22 7.11 99.48 0.71 -13.52 16 19 H -0.30 -14.76 7.11 99.48 0.71 -14.05 16 20 H -0.28 -13.69 7.11 99.48 0.71 -12.99 16 21 C -0.11 -2.99 4.65 30.60 0.14 -2.85 16 22 C -0.11 -3.14 5.75 30.60 0.18 -2.97 16 23 C -0.11 -2.87 5.92 30.60 0.18 -2.69 16 24 C -0.11 -3.50 5.77 30.61 0.18 -3.32 16 25 C -0.11 -3.86 4.52 30.61 0.14 -3.72 16 26 H 0.04 1.26 7.25 -2.39 -0.02 1.24 16 27 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.05 1.37 7.02 -2.39 -0.02 1.35 16 29 H 0.13 1.85 8.14 -2.38 -0.02 1.83 16 30 H 0.09 1.97 8.05 -2.38 -0.02 1.95 16 31 H 0.41 13.64 7.39 -92.71 -0.69 12.96 16 32 H 0.03 1.19 7.50 -2.39 -0.02 1.17 16 33 H 0.06 2.14 8.14 -2.38 -0.02 2.12 16 34 H 0.38 17.78 6.63 -92.71 -0.61 17.17 16 35 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 36 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.06 1.70 7.28 -2.39 -0.02 1.69 16 38 H 0.04 1.51 6.92 -2.39 -0.02 1.49 16 39 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 40 H 0.06 1.51 8.14 -2.39 -0.02 1.50 16 41 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 42 H 0.04 1.70 7.60 -2.39 -0.02 1.68 16 43 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 44 H 0.04 1.45 7.23 -2.38 -0.02 1.43 16 45 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -62.63 347.15 2.38 -60.24 By element: Atomic # 1 Polarization: 39.80 SS G_CDS: -0.32 Total: 39.48 kcal Atomic # 6 Polarization: -14.63 SS G_CDS: 3.83 Total: -10.81 kcal Atomic # 7 Polarization: -110.40 SS G_CDS: -3.11 Total: -113.50 kcal Atomic # 8 Polarization: -23.56 SS G_CDS: -0.04 Total: -23.60 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.19 kcal Total: -62.63 2.38 -60.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115389483.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.584 kcal (2) G-P(sol) polarization free energy of solvation -62.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds