Wall clock time and date at job start Tue Mar 31 2020 02:07:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08999 * 109.46599 * 2 1 4 4 C 1.53045 * 109.46130 * 119.97460 * 2 1 3 5 5 C 1.53185 * 109.31342 * 58.63967 * 4 2 1 6 6 N 1.46926 * 108.77524 * 54.63463 * 5 4 2 7 7 C 1.34787 * 120.62918 * 126.11612 * 6 5 4 8 8 O 1.21282 * 119.99956 * 180.02562 * 7 6 5 9 9 C 1.50697 * 119.99793 * 0.02562 * 7 6 5 10 10 C 1.53784 * 113.61241 * 279.13576 * 9 7 6 11 11 C 1.53962 * 87.01815 * 220.04922 * 10 9 7 12 12 C 1.53780 * 87.11122 * 25.36387 * 11 10 9 13 13 C 1.46924 * 118.73991 * 306.39104 * 6 5 4 14 14 C 1.53038 * 109.45032 * 240.03404 * 2 1 3 15 15 H 1.09001 * 109.50363 * 181.39855 * 14 2 1 16 16 C 1.53002 * 109.49548 * 61.30046 * 14 2 1 17 17 N 1.46500 * 109.46846 * 175.00122 * 16 14 2 18 18 C 1.36937 * 119.99741 * 179.97438 * 17 16 14 19 19 H 1.08004 * 120.00568 * 0.02562 * 18 17 16 20 20 C 1.38817 * 120.00364 * 179.97438 * 18 17 16 21 21 N 1.31620 * 119.99483 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00474 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.46650 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.46840 * 120.00520 * 22 20 18 25 25 H 1.48496 * 109.47106 * 240.00474 * 22 20 18 26 26 H 1.09003 * 109.47265 * 300.02450 * 1 2 3 27 27 H 1.08995 * 109.47590 * 60.02588 * 1 2 3 28 28 H 1.09001 * 109.47242 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.49685 * 298.68492 * 4 2 1 30 30 H 1.09001 * 109.49668 * 178.59010 * 4 2 1 31 31 H 1.09001 * 109.59106 * 294.85078 * 5 4 2 32 32 H 1.09004 * 109.58960 * 174.42271 * 5 4 2 33 33 H 1.08997 * 112.85045 * 50.33186 * 9 7 6 34 34 H 1.08996 * 113.61458 * 334.56727 * 10 9 7 35 35 H 1.08994 * 113.61276 * 105.47913 * 10 9 7 36 36 H 1.08997 * 113.53716 * 270.81202 * 11 10 9 37 37 H 1.09001 * 113.73910 * 139.94056 * 11 10 9 38 38 H 1.08999 * 113.61771 * 220.09076 * 12 11 10 39 39 H 1.09000 * 113.61796 * 89.18523 * 12 11 10 40 40 H 1.09004 * 109.58777 * 173.39544 * 13 6 5 41 41 H 1.08994 * 109.58607 * 293.81880 * 13 6 5 42 42 H 1.08999 * 109.47259 * 294.99895 * 16 14 2 43 43 H 1.08996 * 109.46824 * 55.00160 * 16 14 2 44 44 H 0.96992 * 120.00402 * 0.02562 * 17 16 14 45 45 H 0.97000 * 119.99889 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0398 -0.7210 1.2500 5 6 1.4993 -2.1542 1.2642 6 7 1.8619 -2.8089 -0.0002 7 6 2.5201 -3.9851 -0.0003 8 8 2.8142 -4.5153 -1.0507 9 6 2.8905 -4.6414 1.3047 10 6 4.1615 -4.0612 1.9471 11 6 4.5350 -5.5069 2.3223 12 6 3.6690 -5.9566 1.1337 13 6 1.4989 -2.1541 -1.2643 14 6 2.0395 -0.7208 -1.2501 15 1 3.1293 -0.7431 -1.2386 16 6 1.5565 0.0195 -2.4990 17 7 2.1417 -0.5998 -3.6907 18 6 1.8502 -0.1037 -4.9333 19 1 1.1892 0.7444 -5.0348 20 6 2.4051 -0.6901 -6.0626 21 7 3.2111 -1.7233 -5.9389 22 14 2.0080 -0.0129 -7.7576 23 1 1.0851 1.1429 -7.6250 24 1 3.2615 0.4284 -8.4204 25 1 1.3622 -1.0714 -8.5747 26 1 -0.3634 0.5142 0.8898 27 1 -0.3634 0.5134 -0.8901 28 1 -0.3634 -1.0277 0.0005 29 1 1.6960 -0.1936 2.1398 30 1 3.1295 -0.7432 1.2380 31 1 0.4143 -2.1346 1.3674 32 1 1.9379 -2.7020 2.0983 33 1 2.0492 -4.7184 1.9935 34 1 4.8444 -3.6060 1.2299 35 1 3.9632 -3.4231 2.8082 36 1 4.1442 -5.8201 3.2904 37 1 5.5945 -5.7321 2.2005 38 1 3.0737 -6.8462 1.3390 39 1 4.2170 -6.0204 0.1937 40 1 1.9373 -2.7017 -2.0986 41 1 0.4140 -2.1345 -1.3673 42 1 0.4695 -0.0366 -2.5570 43 1 1.8640 1.0638 -2.4439 44 1 2.7351 -1.3616 -3.5996 45 1 3.5985 -2.1333 -6.7279 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132586004.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:07:43 Heat of formation + Delta-G solvation = -36.985917 kcal Electronic energy + Delta-G solvation = -23135.007629 eV Core-core repulsion = 19958.881163 eV Total energy + Delta-G solvation = -3176.126466 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.73920 -39.87347 -38.12619 -36.64235 -34.84877 -33.49681 -31.56409 -28.92849 -28.29552 -26.66049 -26.48296 -25.37619 -24.89119 -22.57409 -21.50909 -20.22957 -19.34731 -18.87762 -18.34700 -17.16768 -16.80597 -16.46084 -16.23544 -15.91060 -15.66607 -15.41817 -15.05663 -14.61621 -14.55754 -14.12758 -13.85667 -13.65262 -13.46700 -13.08275 -13.02101 -12.90140 -12.79365 -12.64908 -12.43661 -12.15937 -12.09831 -11.93163 -11.92208 -11.72349 -11.43473 -11.32920 -11.27209 -11.20456 -10.96219 -10.59622 -9.55360 -9.03476 -7.97069 -5.27940 1.43116 1.45606 1.55778 1.62334 2.03993 2.53321 3.36014 3.48009 3.59961 3.67364 3.76837 3.83177 3.86222 3.92223 4.08298 4.11517 4.23779 4.32129 4.43216 4.54259 4.57268 4.67990 4.72480 4.78522 4.80953 4.83404 4.87193 4.92100 4.99597 5.04673 5.09613 5.10417 5.19315 5.20188 5.25699 5.30515 5.41389 5.46055 5.51332 5.59447 5.62166 6.23549 6.49441 7.23140 7.28593 8.05180 8.27447 9.26872 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.018599 B = 0.004650 C = 0.003900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.069030 B = 6020.550307 C = 7178.475472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.080 4.080 3 H 0.079 0.921 4 C -0.122 4.122 5 C 0.099 3.901 6 N -0.606 5.606 7 C 0.504 3.496 8 O -0.600 6.600 9 C -0.130 4.130 10 C -0.118 4.118 11 C -0.125 4.125 12 C -0.133 4.133 13 C 0.128 3.872 14 C -0.088 4.088 15 H 0.046 0.954 16 C 0.159 3.841 17 N -0.749 5.749 18 C -0.246 4.246 19 H 0.080 0.920 20 C -0.080 4.080 21 N -0.974 5.974 22 Si 0.978 3.022 23 H -0.261 1.261 24 H -0.292 1.292 25 H -0.294 1.294 26 H 0.082 0.918 27 H 0.045 0.955 28 H 0.054 0.946 29 H 0.113 0.887 30 H 0.059 0.941 31 H 0.087 0.913 32 H 0.113 0.887 33 H 0.147 0.853 34 H 0.058 0.942 35 H 0.108 0.892 36 H 0.113 0.887 37 H 0.071 0.929 38 H 0.081 0.919 39 H 0.056 0.944 40 H 0.042 0.958 41 H 0.070 0.930 42 H 0.030 0.970 43 H 0.024 0.976 44 H 0.369 0.631 45 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.753 -1.125 26.245 26.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.099 4.099 3 H 0.097 0.903 4 C -0.160 4.160 5 C -0.021 4.021 6 N -0.338 5.338 7 C 0.294 3.706 8 O -0.480 6.480 9 C -0.150 4.150 10 C -0.156 4.156 11 C -0.162 4.162 12 C -0.171 4.171 13 C 0.004 3.996 14 C -0.108 4.108 15 H 0.065 0.935 16 C 0.033 3.967 17 N -0.392 5.392 18 C -0.377 4.377 19 H 0.098 0.902 20 C -0.272 4.272 21 N -0.625 5.625 22 Si 0.807 3.193 23 H -0.185 1.185 24 H -0.219 1.219 25 H -0.221 1.221 26 H 0.101 0.899 27 H 0.064 0.936 28 H 0.073 0.927 29 H 0.131 0.869 30 H 0.078 0.922 31 H 0.106 0.894 32 H 0.131 0.869 33 H 0.165 0.835 34 H 0.077 0.923 35 H 0.127 0.873 36 H 0.131 0.869 37 H 0.090 0.910 38 H 0.100 0.900 39 H 0.075 0.925 40 H 0.061 0.939 41 H 0.088 0.912 42 H 0.047 0.953 43 H 0.041 0.959 44 H 0.200 0.800 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -3.716 -1.254 25.608 25.906 hybrid contribution 0.334 -0.151 -2.056 2.089 sum -3.382 -1.405 23.551 23.834 Atomic orbital electron populations 1.21951 0.94027 1.02051 1.02520 1.21077 0.96920 0.99273 0.92652 0.90290 1.21945 1.00802 0.94964 0.98297 1.22163 1.01649 0.93822 0.84513 1.48299 1.56406 1.21087 1.07958 1.21571 0.76140 0.80729 0.92127 1.90722 1.56014 1.65142 1.36162 1.22952 1.00612 0.98094 0.93392 1.22864 0.94026 0.98178 1.00513 1.22850 1.00204 0.94696 0.98442 1.22832 0.98687 0.96287 0.99290 1.21331 0.99275 0.92802 0.86167 1.21531 0.99098 0.94288 0.95906 0.93528 1.20879 0.95922 0.94820 0.85122 1.42710 1.56861 1.37476 1.02126 1.19729 1.22320 1.10696 0.84995 0.90205 1.25688 1.00496 0.98960 1.02069 1.69889 1.37276 1.26200 1.29118 0.85004 0.77243 0.77620 0.79481 1.18472 1.21938 1.22116 0.89903 0.93565 0.92679 0.86880 0.92186 0.89446 0.86852 0.83537 0.92310 0.87327 0.86882 0.91044 0.90018 0.92512 0.93916 0.91203 0.95252 0.95858 0.79960 0.94123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.93 8.11 71.98 0.58 -2.35 16 2 C -0.08 -1.81 2.71 -10.77 -0.03 -1.84 16 3 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 4 C -0.12 -1.94 5.63 30.67 0.17 -1.77 16 5 C 0.10 1.63 5.84 86.36 0.50 2.13 16 6 N -0.61 -17.23 2.97 -818.90 -2.43 -19.66 16 7 C 0.50 16.29 7.22 87.65 0.63 16.93 16 8 O -0.60 -27.27 15.32 -3.04 -0.05 -27.32 16 9 C -0.13 -2.60 2.72 -11.01 -0.03 -2.63 16 10 C -0.12 -1.89 7.16 31.18 0.22 -1.67 16 11 C -0.12 -1.74 8.09 31.18 0.25 -1.49 16 12 C -0.13 -2.84 7.40 31.12 0.23 -2.61 16 13 C 0.13 4.66 5.05 86.36 0.44 5.10 16 14 C -0.09 -3.02 2.15 -10.71 -0.02 -3.05 16 15 H 0.05 1.81 8.14 -2.39 -0.02 1.80 16 16 C 0.16 6.67 5.18 86.38 0.45 7.12 16 17 N -0.75 -41.36 5.38 -343.45 -1.85 -43.20 16 18 C -0.25 -14.57 9.99 84.03 0.84 -13.73 16 19 H 0.08 4.47 7.83 -2.91 -0.02 4.45 16 20 C -0.08 -4.92 5.50 84.86 0.47 -4.45 16 21 N -0.97 -64.59 13.06 21.65 0.28 -64.31 16 22 Si 0.98 48.56 29.55 68.60 2.03 50.59 16 23 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 24 H -0.29 -14.42 7.11 99.48 0.71 -13.71 16 25 H -0.29 -14.59 7.11 99.48 0.71 -13.89 16 26 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.05 1.08 6.57 -2.39 -0.02 1.06 16 28 H 0.05 1.12 4.98 -2.39 -0.01 1.10 16 29 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.09 1.19 6.69 -2.39 -0.02 1.17 16 32 H 0.11 1.16 5.36 -2.38 -0.01 1.15 16 33 H 0.15 1.85 7.55 -2.39 -0.02 1.83 16 34 H 0.06 1.28 8.09 -2.39 -0.02 1.26 16 35 H 0.11 1.00 7.89 -2.39 -0.02 0.98 16 36 H 0.11 0.93 8.14 -2.39 -0.02 0.92 16 37 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.06 1.66 7.45 -2.39 -0.02 1.64 16 40 H 0.04 2.07 6.21 -2.38 -0.01 2.06 16 41 H 0.07 2.44 6.69 -2.39 -0.02 2.43 16 42 H 0.03 1.21 6.73 -2.39 -0.02 1.19 16 43 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.37 22.46 6.90 -92.71 -0.64 21.82 16 45 H 0.25 16.00 8.31 -92.71 -0.77 15.23 16 Total: -1.00 -81.66 340.90 3.03 -78.63 By element: Atomic # 1 Polarization: 29.25 SS G_CDS: 0.34 Total: 29.58 kcal Atomic # 6 Polarization: -9.02 SS G_CDS: 4.71 Total: -4.31 kcal Atomic # 7 Polarization: -123.17 SS G_CDS: -4.00 Total: -127.17 kcal Atomic # 8 Polarization: -27.27 SS G_CDS: -0.05 Total: -27.32 kcal Atomic # 14 Polarization: 48.56 SS G_CDS: 2.03 Total: 50.59 kcal Total: -81.66 3.03 -78.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132586004.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.644 kcal (2) G-P(sol) polarization free energy of solvation -81.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds