Wall clock time and date at job start Tue Mar 31 2020 01:50:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09008 * 115.55064 * 2 1 4 4 C 1.53000 * 117.49920 * 214.33219 * 2 1 3 5 5 C 1.53002 * 60.02940 * 252.47484 * 4 2 1 6 6 H 1.09000 * 117.49996 * 107.50493 * 5 4 2 7 7 C 1.50706 * 117.49668 * 252.51929 * 5 4 2 8 8 O 1.21277 * 120.00023 * 68.61167 * 7 5 4 9 9 N 1.34780 * 119.99945 * 248.60941 * 7 5 4 10 10 C 1.48142 * 127.83594 * 359.68365 * 9 7 5 11 11 C 1.54796 * 104.41627 * 140.36884 * 10 9 7 12 12 H 1.09000 * 110.29149 * 142.98139 * 11 10 9 13 13 C 1.53003 * 110.52237 * 265.22316 * 11 10 9 14 14 C 1.54285 * 104.92110 * 24.15894 * 11 10 9 15 15 C 1.52997 * 110.43589 * 240.89455 * 14 11 10 16 16 C 1.53008 * 110.33969 * 118.67746 * 14 11 10 17 17 N 1.46506 * 109.46888 * 183.00751 * 16 14 11 18 18 C 1.36936 * 119.99640 * 179.97438 * 17 16 14 19 19 H 1.07993 * 120.00353 * 0.02562 * 18 17 16 20 20 C 1.38820 * 119.99481 * 180.02562 * 18 17 16 21 21 N 1.31617 * 119.99332 * 180.02562 * 20 18 17 22 22 Si 1.86797 * 120.00108 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.47439 * 89.99837 * 22 20 18 24 24 H 1.48503 * 109.46789 * 209.99830 * 22 20 18 25 25 H 1.48495 * 109.46982 * 329.99351 * 22 20 18 26 26 C 1.48147 * 127.83609 * 180.02562 * 9 7 5 27 27 H 1.09001 * 109.47296 * 154.27542 * 1 2 3 28 28 H 1.09007 * 109.46973 * 274.28028 * 1 2 3 29 29 H 1.09008 * 109.47059 * 34.27409 * 1 2 3 30 30 H 1.09002 * 117.49833 * 359.97438 * 4 2 1 31 31 H 1.09002 * 117.49953 * 144.97630 * 4 2 1 32 32 H 1.08999 * 110.40787 * 259.19411 * 10 9 7 33 33 H 1.08997 * 110.41110 * 21.63065 * 10 9 7 34 34 H 1.08998 * 109.47061 * 175.59545 * 13 11 10 35 35 H 1.09000 * 109.47057 * 295.59135 * 13 11 10 36 36 H 1.08992 * 109.47220 * 55.59422 * 13 11 10 37 37 H 1.09003 * 109.47090 * 177.04681 * 15 14 11 38 38 H 1.09004 * 109.47068 * 297.04026 * 15 14 11 39 39 H 1.09002 * 109.46815 * 57.04242 * 15 14 11 40 40 H 1.08991 * 109.47538 * 303.01103 * 16 14 11 41 41 H 1.09003 * 109.46668 * 63.01653 * 16 14 11 42 42 H 0.96999 * 120.00262 * 0.02562 * 17 16 14 43 43 H 0.97000 * 119.99580 * 180.02562 * 21 20 18 44 44 H 1.09009 * 110.40575 * 338.36930 * 26 9 7 45 45 H 1.08997 * 110.40408 * 100.80105 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0001 0.9835 0.0000 4 6 2.2364 -1.1207 -0.7654 5 6 2.2375 -1.1215 0.7646 6 1 1.6131 -1.8596 1.2680 7 6 3.5307 -0.7813 1.4597 8 8 3.9728 0.3464 1.4001 9 7 4.1960 -1.7305 2.1474 10 6 3.8155 -3.1494 2.3381 11 6 5.1506 -3.9248 2.2268 12 1 5.1639 -4.7575 2.9301 13 6 5.3585 -4.4326 0.7986 14 6 6.2396 -2.8954 2.5939 15 6 7.2003 -2.6927 1.4205 16 6 7.0073 -3.3533 3.8357 17 7 7.9868 -2.3298 4.2092 18 6 8.7950 -2.5206 5.2980 19 1 8.7106 -3.4256 5.8812 20 6 9.7227 -1.5505 5.6522 21 7 10.4998 -1.7341 6.6984 22 14 9.8681 0.0152 4.6439 23 1 8.9511 1.0455 5.1943 24 1 11.2656 0.5140 4.7030 25 1 9.5033 -0.2692 3.2328 26 6 5.4702 -1.5897 2.8900 27 1 -0.3634 -0.9258 -0.4461 28 1 -0.3633 0.0767 1.0249 29 1 -0.3633 0.8493 -0.5788 30 1 1.6112 -1.8583 -1.2686 31 1 3.1711 -0.8745 -1.2692 32 1 3.3699 -3.2945 3.3223 33 1 3.1247 -3.4660 1.5567 34 1 6.3368 -4.9069 0.7204 35 1 4.5825 -5.1581 0.5543 36 1 5.3044 -3.5948 0.1036 37 1 7.9307 -1.9255 1.6773 38 1 7.7164 -3.6289 1.2076 39 1 6.6382 -2.3795 0.5407 40 1 6.3093 -3.5057 4.6588 41 1 7.5237 -4.2885 3.6192 42 1 8.0623 -1.5167 3.6856 43 1 11.1478 -1.0561 6.9462 44 1 6.0294 -0.7279 2.5253 45 1 5.2787 -1.4951 3.9588 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001182207977.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:50:22 Heat of formation + Delta-G solvation = -0.361693 kcal Electronic energy + Delta-G solvation = -22962.965059 eV Core-core repulsion = 19788.426738 eV Total energy + Delta-G solvation = -3174.538321 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.51722 -38.92758 -36.69781 -34.96690 -33.15806 -31.61679 -30.09173 -29.13477 -27.56825 -26.21250 -25.61779 -23.64027 -22.71474 -21.12305 -20.91279 -19.16273 -18.66924 -17.80988 -16.99477 -15.97700 -15.83113 -14.81128 -14.58138 -14.33005 -14.08870 -13.92892 -13.81553 -13.59998 -13.37170 -13.06364 -12.78947 -12.55297 -12.44596 -12.14476 -12.10060 -11.71757 -11.67215 -11.45570 -11.40199 -11.27382 -10.84526 -10.61559 -10.45307 -10.39772 -10.34006 -10.22031 -9.98562 -9.76520 -9.55326 -8.89221 -8.64609 -7.22196 -5.76037 -3.11308 2.45798 2.89678 3.40052 3.43811 3.48393 3.59998 4.25847 4.48358 4.51838 4.54698 4.60953 4.64395 4.82519 4.91765 5.03493 5.22590 5.30912 5.33531 5.39691 5.41176 5.42022 5.45675 5.50103 5.56709 5.66381 5.68589 5.75507 5.76245 5.81380 5.93905 5.95687 6.02632 6.06438 6.13149 6.14313 6.30234 6.48893 6.53496 6.64652 6.72100 7.59935 7.99775 8.18763 8.43122 9.22051 9.94689 10.14139 11.42420 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.022877 B = 0.004447 C = 0.004014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.643894 B = 6295.367081 C = 6973.201298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.124 4.124 3 H 0.117 0.883 4 C -0.148 4.148 5 C -0.185 4.185 6 H 0.121 0.879 7 C 0.560 3.440 8 O -0.544 6.544 9 N -0.616 5.616 10 C 0.105 3.895 11 C -0.096 4.096 12 H 0.090 0.910 13 C -0.141 4.141 14 C -0.080 4.080 15 C -0.133 4.133 16 C 0.173 3.827 17 N -0.755 5.755 18 C -0.244 4.244 19 H 0.090 0.910 20 C 0.006 3.994 21 N -0.934 5.934 22 Si 0.880 3.120 23 H -0.283 1.283 24 H -0.290 1.290 25 H -0.277 1.277 26 C 0.115 3.885 27 H 0.057 0.943 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.103 0.897 31 H 0.098 0.902 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.063 0.937 35 H 0.050 0.950 36 H 0.056 0.944 37 H 0.058 0.942 38 H 0.061 0.939 39 H 0.050 0.950 40 H 0.029 0.971 41 H 0.031 0.969 42 H 0.361 0.639 43 H 0.259 0.741 44 H 0.080 0.920 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.009 -4.093 -15.636 25.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.142 4.142 3 H 0.135 0.865 4 C -0.186 4.186 5 C -0.206 4.206 6 H 0.139 0.861 7 C 0.349 3.651 8 O -0.421 6.421 9 N -0.349 5.349 10 C -0.018 4.018 11 C -0.116 4.116 12 H 0.108 0.892 13 C -0.199 4.199 14 C -0.081 4.081 15 C -0.190 4.190 16 C 0.045 3.955 17 N -0.401 5.401 18 C -0.373 4.373 19 H 0.108 0.892 20 C -0.190 4.190 21 N -0.582 5.582 22 Si 0.710 3.290 23 H -0.210 1.210 24 H -0.217 1.217 25 H -0.203 1.203 26 C -0.007 4.007 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.121 0.879 31 H 0.117 0.883 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.082 0.918 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.069 0.931 40 H 0.047 0.953 41 H 0.049 0.951 42 H 0.195 0.805 43 H 0.069 0.931 44 H 0.098 0.902 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -19.717 -3.507 -15.518 25.335 hybrid contribution 0.316 1.024 -0.422 1.151 sum -19.401 -2.484 -15.940 25.232 Atomic orbital electron populations 1.21395 0.92237 1.02138 1.02202 1.22398 0.95161 0.95176 1.01501 0.86525 1.23085 1.03086 1.01500 0.90902 1.22261 0.97601 1.05075 0.95656 0.86100 1.19237 0.84310 0.83639 0.77877 1.90707 1.68765 1.20637 1.62023 1.48904 1.24441 1.10442 1.51153 1.22586 0.97238 0.80472 1.01520 1.22186 0.93443 0.97653 0.98279 0.89162 1.21897 1.01794 1.00563 0.95598 1.21772 0.94868 0.94068 0.97379 1.21883 0.98466 1.02218 0.96452 1.20697 0.90691 0.92309 0.91763 1.42747 1.43215 1.19988 1.34113 1.19040 1.11469 1.04259 1.02566 0.89194 1.24649 0.98426 0.98184 0.97722 1.69699 1.25444 1.35407 1.27674 0.86620 0.77234 0.84879 0.80235 1.20954 1.21659 1.20328 1.22517 0.83345 0.98395 0.96404 0.92388 0.91942 0.91690 0.87853 0.88345 0.90861 0.90317 0.91832 0.93049 0.92487 0.92303 0.92041 0.93094 0.95297 0.95090 0.80536 0.93062 0.90183 0.90178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.85 10.19 37.15 0.38 -0.47 16 2 C -0.12 -1.18 5.92 -90.59 -0.54 -1.72 16 3 H 0.12 1.34 7.67 -51.92 -0.40 0.94 16 4 C -0.15 -1.28 9.88 -26.73 -0.26 -1.55 16 5 C -0.18 -1.91 5.03 -91.73 -0.46 -2.37 16 6 H 0.12 1.01 7.64 -51.93 -0.40 0.61 16 7 C 0.56 8.18 7.70 -10.98 -0.08 8.10 16 8 O -0.54 -10.20 16.52 5.56 0.09 -10.11 16 9 N -0.62 -8.43 3.31 -169.03 -0.56 -8.99 16 10 C 0.11 1.08 6.39 -2.19 -0.01 1.06 16 11 C -0.10 -1.06 3.31 -89.00 -0.29 -1.36 16 12 H 0.09 0.93 7.71 -51.93 -0.40 0.53 16 13 C -0.14 -1.37 7.95 37.16 0.30 -1.07 16 14 C -0.08 -1.18 0.73 -153.09 -0.11 -1.29 16 15 C -0.13 -2.00 7.08 37.16 0.26 -1.73 16 16 C 0.17 3.19 4.85 -4.03 -0.02 3.17 16 17 N -0.75 -17.69 4.92 -59.90 -0.29 -17.98 16 18 C -0.24 -6.87 10.47 -15.06 -0.16 -7.03 16 19 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 20 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 21 N -0.93 -29.59 13.97 55.49 0.78 -28.81 16 22 Si 0.88 22.66 27.74 -169.99 -4.71 17.94 16 23 H -0.28 -7.30 7.11 56.52 0.40 -6.90 16 24 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 25 H -0.28 -6.75 6.52 56.52 0.37 -6.38 16 26 C 0.12 1.86 5.55 -2.39 -0.01 1.85 16 27 H 0.06 0.33 7.90 -51.93 -0.41 -0.08 16 28 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16 29 H 0.06 0.40 8.14 -51.92 -0.42 -0.02 16 30 H 0.10 0.66 8.05 -51.93 -0.42 0.24 16 31 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.08 0.63 6.94 -51.93 -0.36 0.27 16 34 H 0.06 0.64 6.89 -51.93 -0.36 0.28 16 35 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.06 0.59 6.73 -51.93 -0.35 0.24 16 37 H 0.06 1.03 7.00 -51.93 -0.36 0.66 16 38 H 0.06 0.86 6.99 -51.93 -0.36 0.50 16 39 H 0.05 0.71 6.62 -51.93 -0.34 0.36 16 40 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.36 8.46 4.13 -40.82 -0.17 8.29 16 43 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 44 H 0.08 1.47 7.60 -51.92 -0.39 1.08 16 45 H 0.08 1.37 7.86 -51.93 -0.41 0.96 16 LS Contribution 350.83 15.07 5.29 5.29 Total: -1.00 -33.49 350.83 -8.22 -41.71 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -7.68 Total: 5.29 kcal Atomic # 6 Polarization: -3.21 SS G_CDS: -1.12 Total: -4.33 kcal Atomic # 7 Polarization: -55.70 SS G_CDS: -0.08 Total: -55.78 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: 0.09 Total: -10.11 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -4.71 Total: 17.94 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.49 -8.22 -41.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182207977.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.347 kcal (2) G-P(sol) polarization free energy of solvation -33.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds