Wall clock time and date at job start Tue Mar 31 2020 01:50:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09008 * 115.55064 * 2 1 4 4 C 1.53000 * 117.49920 * 214.33219 * 2 1 3 5 5 C 1.53002 * 60.02940 * 252.47484 * 4 2 1 6 6 H 1.09000 * 117.49996 * 107.50493 * 5 4 2 7 7 C 1.50706 * 117.49668 * 252.51929 * 5 4 2 8 8 O 1.21277 * 120.00023 * 68.61167 * 7 5 4 9 9 N 1.34780 * 119.99945 * 248.60941 * 7 5 4 10 10 C 1.48142 * 127.83594 * 359.68365 * 9 7 5 11 11 C 1.54796 * 104.41627 * 140.36884 * 10 9 7 12 12 H 1.09000 * 110.29149 * 142.98139 * 11 10 9 13 13 C 1.53003 * 110.52237 * 265.22316 * 11 10 9 14 14 C 1.54285 * 104.92110 * 24.15894 * 11 10 9 15 15 C 1.52997 * 110.43589 * 240.89455 * 14 11 10 16 16 C 1.53008 * 110.33969 * 118.67746 * 14 11 10 17 17 N 1.46506 * 109.46888 * 183.00751 * 16 14 11 18 18 C 1.36936 * 119.99640 * 179.97438 * 17 16 14 19 19 H 1.07993 * 120.00353 * 0.02562 * 18 17 16 20 20 C 1.38820 * 119.99481 * 180.02562 * 18 17 16 21 21 N 1.31617 * 119.99332 * 180.02562 * 20 18 17 22 22 Si 1.86797 * 120.00108 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.47439 * 89.99837 * 22 20 18 24 24 H 1.48503 * 109.46789 * 209.99830 * 22 20 18 25 25 H 1.48495 * 109.46982 * 329.99351 * 22 20 18 26 26 C 1.48147 * 127.83609 * 180.02562 * 9 7 5 27 27 H 1.09001 * 109.47296 * 154.27542 * 1 2 3 28 28 H 1.09007 * 109.46973 * 274.28028 * 1 2 3 29 29 H 1.09008 * 109.47059 * 34.27409 * 1 2 3 30 30 H 1.09002 * 117.49833 * 359.97438 * 4 2 1 31 31 H 1.09002 * 117.49953 * 144.97630 * 4 2 1 32 32 H 1.08999 * 110.40787 * 259.19411 * 10 9 7 33 33 H 1.08997 * 110.41110 * 21.63065 * 10 9 7 34 34 H 1.08998 * 109.47061 * 175.59545 * 13 11 10 35 35 H 1.09000 * 109.47057 * 295.59135 * 13 11 10 36 36 H 1.08992 * 109.47220 * 55.59422 * 13 11 10 37 37 H 1.09003 * 109.47090 * 177.04681 * 15 14 11 38 38 H 1.09004 * 109.47068 * 297.04026 * 15 14 11 39 39 H 1.09002 * 109.46815 * 57.04242 * 15 14 11 40 40 H 1.08991 * 109.47538 * 303.01103 * 16 14 11 41 41 H 1.09003 * 109.46668 * 63.01653 * 16 14 11 42 42 H 0.96999 * 120.00262 * 0.02562 * 17 16 14 43 43 H 0.97000 * 119.99580 * 180.02562 * 21 20 18 44 44 H 1.09009 * 110.40575 * 338.36930 * 26 9 7 45 45 H 1.08997 * 110.40408 * 100.80105 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0001 0.9835 0.0000 4 6 2.2364 -1.1207 -0.7654 5 6 2.2375 -1.1215 0.7646 6 1 1.6131 -1.8596 1.2680 7 6 3.5307 -0.7813 1.4597 8 8 3.9728 0.3464 1.4001 9 7 4.1960 -1.7305 2.1474 10 6 3.8155 -3.1494 2.3381 11 6 5.1506 -3.9248 2.2268 12 1 5.1639 -4.7575 2.9301 13 6 5.3585 -4.4326 0.7986 14 6 6.2396 -2.8954 2.5939 15 6 7.2003 -2.6927 1.4205 16 6 7.0073 -3.3533 3.8357 17 7 7.9868 -2.3298 4.2092 18 6 8.7950 -2.5206 5.2980 19 1 8.7106 -3.4256 5.8812 20 6 9.7227 -1.5505 5.6522 21 7 10.4998 -1.7341 6.6984 22 14 9.8681 0.0152 4.6439 23 1 8.9511 1.0455 5.1943 24 1 11.2656 0.5140 4.7030 25 1 9.5033 -0.2692 3.2328 26 6 5.4702 -1.5897 2.8900 27 1 -0.3634 -0.9258 -0.4461 28 1 -0.3633 0.0767 1.0249 29 1 -0.3633 0.8493 -0.5788 30 1 1.6112 -1.8583 -1.2686 31 1 3.1711 -0.8745 -1.2692 32 1 3.3699 -3.2945 3.3223 33 1 3.1247 -3.4660 1.5567 34 1 6.3368 -4.9069 0.7204 35 1 4.5825 -5.1581 0.5543 36 1 5.3044 -3.5948 0.1036 37 1 7.9307 -1.9255 1.6773 38 1 7.7164 -3.6289 1.2076 39 1 6.6382 -2.3795 0.5407 40 1 6.3093 -3.5057 4.6588 41 1 7.5237 -4.2885 3.6192 42 1 8.0623 -1.5167 3.6856 43 1 11.1478 -1.0561 6.9462 44 1 6.0294 -0.7279 2.5253 45 1 5.2787 -1.4951 3.9588 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001182207977.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:50:22 Heat of formation + Delta-G solvation = -21.798593 kcal Electronic energy + Delta-G solvation = -22963.894633 eV Core-core repulsion = 19788.426738 eV Total energy + Delta-G solvation = -3175.467894 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.60568 -39.98732 -37.62664 -36.65325 -34.59473 -33.31800 -31.56018 -29.83155 -28.66066 -27.62954 -26.67560 -25.01804 -24.04573 -22.37496 -21.66790 -20.23157 -20.19993 -19.27660 -18.20277 -17.17046 -16.89110 -16.56052 -15.92857 -15.60719 -15.29326 -15.20421 -14.81781 -14.68727 -14.61166 -14.18069 -13.96380 -13.76729 -13.55786 -13.42180 -13.18099 -12.98235 -12.90258 -12.66022 -12.56233 -12.41260 -12.30658 -12.12058 -11.89428 -11.53393 -11.48390 -11.34831 -11.28472 -11.03541 -11.01543 -10.82624 -9.77661 -9.30474 -8.06193 -5.37371 1.31799 1.34090 1.39644 1.41942 1.85890 2.42791 2.83359 3.25526 3.27470 3.51705 3.61473 3.73664 3.77086 3.85900 3.93274 4.15857 4.22565 4.23752 4.28808 4.41247 4.51987 4.59294 4.66305 4.73897 4.75656 4.80114 4.86322 4.88871 4.94463 4.99076 5.01932 5.03708 5.07947 5.12126 5.21393 5.23633 5.33887 5.40354 5.42694 5.58364 5.74485 6.18900 6.55076 7.05204 7.08490 7.82838 7.99482 9.15629 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.022877 B = 0.004447 C = 0.004014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.643894 B = 6295.367081 C = 6973.201298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.133 4.133 3 H 0.085 0.915 4 C -0.130 4.130 5 C -0.187 4.187 6 H 0.151 0.849 7 C 0.550 3.450 8 O -0.599 6.599 9 N -0.614 5.614 10 C 0.104 3.896 11 C -0.089 4.089 12 H 0.105 0.895 13 C -0.137 4.137 14 C -0.071 4.071 15 C -0.128 4.128 16 C 0.170 3.830 17 N -0.758 5.758 18 C -0.226 4.226 19 H 0.065 0.935 20 C -0.058 4.058 21 N -0.981 5.981 22 Si 0.940 3.060 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.260 1.260 26 C 0.115 3.885 27 H 0.079 0.921 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.139 0.861 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.114 0.886 34 H 0.059 0.941 35 H 0.080 0.920 36 H 0.049 0.951 37 H 0.027 0.973 38 H 0.072 0.928 39 H 0.062 0.938 40 H 0.033 0.967 41 H 0.036 0.964 42 H 0.362 0.638 43 H 0.258 0.742 44 H 0.048 0.952 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.936 -5.850 -18.022 29.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.151 4.151 3 H 0.104 0.896 4 C -0.167 4.167 5 C -0.208 4.208 6 H 0.169 0.831 7 C 0.341 3.659 8 O -0.481 6.481 9 N -0.346 5.346 10 C -0.017 4.017 11 C -0.109 4.109 12 H 0.123 0.877 13 C -0.194 4.194 14 C -0.072 4.072 15 C -0.185 4.185 16 C 0.044 3.956 17 N -0.404 5.404 18 C -0.357 4.357 19 H 0.083 0.917 20 C -0.250 4.250 21 N -0.632 5.632 22 Si 0.769 3.231 23 H -0.211 1.211 24 H -0.218 1.218 25 H -0.185 1.185 26 C -0.009 4.009 27 H 0.098 0.902 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.157 0.843 31 H 0.101 0.899 32 H 0.104 0.896 33 H 0.132 0.868 34 H 0.078 0.922 35 H 0.099 0.901 36 H 0.068 0.932 37 H 0.046 0.954 38 H 0.091 0.909 39 H 0.081 0.919 40 H 0.051 0.949 41 H 0.054 0.946 42 H 0.195 0.805 43 H 0.067 0.933 44 H 0.067 0.933 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -22.695 -5.318 -17.939 29.413 hybrid contribution 1.196 1.507 0.352 1.956 sum -21.498 -3.812 -17.587 28.036 Atomic orbital electron populations 1.21387 0.89903 1.03526 1.02525 1.22438 0.96831 0.93949 1.01928 0.89626 1.23196 1.02690 1.01344 0.89482 1.22293 0.95582 1.06331 0.96588 0.83097 1.20124 0.85395 0.82908 0.77442 1.90678 1.70412 1.23018 1.63990 1.48986 1.23312 1.12011 1.50243 1.22858 0.97385 0.77845 1.03612 1.22214 0.91981 0.96874 0.99810 0.87715 1.21870 1.02718 1.00877 0.93977 1.21653 0.95431 0.94702 0.95461 1.21843 0.98006 1.01766 0.96904 1.20903 0.89950 0.91179 0.93599 1.42818 1.43513 1.21245 1.32834 1.19073 1.11028 1.02754 1.02851 0.91734 1.25341 0.98904 1.01560 0.99165 1.69849 1.26847 1.36686 1.29858 0.85631 0.76860 0.80951 0.79683 1.21072 1.21789 1.18459 1.22304 0.84850 0.97972 0.95748 0.90227 0.92010 0.91230 0.84312 0.89869 0.89615 0.86803 0.92236 0.90118 0.93221 0.95370 0.90867 0.91910 0.94942 0.94601 0.80495 0.93349 0.93348 0.91728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.27 10.19 71.98 0.73 -0.54 16 2 C -0.13 -2.30 5.92 -10.77 -0.06 -2.36 16 3 H 0.09 2.02 7.67 -2.38 -0.02 2.00 16 4 C -0.13 -1.83 9.88 30.60 0.30 -1.53 16 5 C -0.19 -3.34 5.03 -11.51 -0.06 -3.40 16 6 H 0.15 1.78 7.64 -2.39 -0.02 1.76 16 7 C 0.55 15.62 7.70 87.66 0.67 16.30 16 8 O -0.60 -23.25 16.52 -3.02 -0.05 -23.30 16 9 N -0.61 -15.87 3.31 -807.08 -2.67 -18.55 16 10 C 0.10 1.74 6.39 86.68 0.55 2.30 16 11 C -0.09 -1.67 3.31 -9.74 -0.03 -1.70 16 12 H 0.10 1.73 7.71 -2.39 -0.02 1.71 16 13 C -0.14 -2.08 7.95 71.98 0.57 -1.51 16 14 C -0.07 -2.01 0.73 -51.26 -0.04 -2.05 16 15 C -0.13 -3.71 7.08 71.98 0.51 -3.20 16 16 C 0.17 6.13 4.85 86.38 0.42 6.55 16 17 N -0.76 -35.75 4.92 -343.43 -1.69 -37.44 16 18 C -0.23 -12.99 10.47 84.04 0.88 -12.11 16 19 H 0.06 3.99 8.06 -2.91 -0.02 3.96 16 20 C -0.06 -3.50 5.50 84.86 0.47 -3.03 16 21 N -0.98 -63.89 13.97 21.65 0.30 -63.59 16 22 Si 0.94 47.87 27.74 68.60 1.90 49.78 16 23 H -0.28 -14.42 7.11 99.48 0.71 -13.71 16 24 H -0.29 -14.82 7.11 99.48 0.71 -14.11 16 25 H -0.26 -12.29 6.52 99.48 0.65 -11.64 16 26 C 0.11 3.70 5.55 86.55 0.48 4.18 16 27 H 0.08 0.54 7.90 -2.39 -0.02 0.52 16 28 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 29 H 0.07 0.69 8.14 -2.38 -0.02 0.68 16 30 H 0.14 1.01 8.05 -2.39 -0.02 0.99 16 31 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.11 1.17 6.94 -2.39 -0.02 1.15 16 34 H 0.06 0.97 6.89 -2.39 -0.02 0.95 16 35 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.05 0.84 6.73 -2.39 -0.02 0.83 16 37 H 0.03 0.97 7.00 -2.39 -0.02 0.95 16 38 H 0.07 1.93 6.99 -2.38 -0.02 1.91 16 39 H 0.06 1.66 6.62 -2.39 -0.02 1.64 16 40 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.36 17.05 4.13 -92.71 -0.38 16.66 16 43 H 0.26 16.03 8.31 -92.71 -0.77 15.26 16 44 H 0.05 1.85 7.60 -2.38 -0.02 1.83 16 45 H 0.06 2.25 7.86 -2.39 -0.02 2.23 16 Total: -1.00 -76.75 350.83 3.71 -73.04 By element: Atomic # 1 Polarization: 21.64 SS G_CDS: 0.52 Total: 22.16 kcal Atomic # 6 Polarization: -7.51 SS G_CDS: 5.40 Total: -2.11 kcal Atomic # 7 Polarization: -115.51 SS G_CDS: -4.06 Total: -119.57 kcal Atomic # 8 Polarization: -23.25 SS G_CDS: -0.05 Total: -23.30 kcal Atomic # 14 Polarization: 47.87 SS G_CDS: 1.90 Total: 49.78 kcal Total: -76.75 3.71 -73.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182207977.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.243 kcal (2) G-P(sol) polarization free energy of solvation -76.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds