Wall clock time and date at job start Tue Mar 31 2020 02:36:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 110.91827 * 2 1 4 4 C 1.54912 * 111.00351 * 236.09966 * 2 1 3 5 5 N 1.47421 * 104.83149 * 204.91697 * 4 2 1 6 6 C 1.36943 * 125.64889 * 204.09455 * 5 4 2 7 7 H 1.08006 * 119.99668 * 0.02562 * 6 5 4 8 8 C 1.38811 * 120.00281 * 180.02562 * 6 5 4 9 9 N 1.31613 * 119.99683 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00029 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.46898 * 59.99937 * 10 8 6 12 12 H 1.48497 * 109.47090 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.46865 * 300.00208 * 10 8 6 14 14 C 1.47020 * 108.70752 * 24.12324 * 5 4 2 15 15 C 1.54324 * 107.26774 * 358.94598 * 14 5 4 16 16 H 1.08997 * 110.72396 * 96.34798 * 15 14 5 17 17 N 1.46508 * 110.71888 * 219.44067 * 15 14 5 18 18 C 1.34776 * 119.99471 * 273.54534 * 17 15 14 19 19 O 1.21610 * 120.00822 * 359.97438 * 18 17 15 20 20 C 1.47108 * 119.99470 * 179.97438 * 18 17 15 21 21 C 1.32997 * 119.99723 * 177.86081 * 20 18 17 22 22 C 1.50698 * 120.00199 * 351.44859 * 21 20 18 23 23 C 1.52994 * 109.47196 * 70.54836 * 22 21 20 24 24 C 1.53004 * 109.47046 * 310.54879 * 22 21 20 25 25 C 1.53001 * 109.46959 * 190.55005 * 22 21 20 26 26 H 1.09000 * 109.47038 * 296.09738 * 1 2 3 27 27 H 1.08993 * 109.47460 * 56.09321 * 1 2 3 28 28 H 1.09000 * 109.46954 * 176.10207 * 1 2 3 29 29 H 1.08999 * 110.36778 * 86.07749 * 4 2 1 30 30 H 1.09003 * 110.45926 * 323.80307 * 4 2 1 31 31 H 0.97000 * 119.99792 * 180.02562 * 9 8 6 32 32 H 1.08990 * 109.88656 * 239.52480 * 14 5 4 33 33 H 1.09000 * 110.00915 * 118.42824 * 14 5 4 34 34 H 0.96997 * 119.99634 * 93.54666 * 17 15 14 35 35 H 1.07997 * 119.99957 * 357.86066 * 20 18 17 36 36 H 1.07999 * 119.99293 * 171.44884 * 21 20 18 37 37 H 1.08999 * 109.47171 * 332.09715 * 23 22 21 38 38 H 1.09000 * 109.47500 * 92.09783 * 23 22 21 39 39 H 1.09007 * 109.47152 * 212.09938 * 23 22 21 40 40 H 1.08996 * 109.47289 * 141.80743 * 24 22 21 41 41 H 1.09004 * 109.46935 * 261.81372 * 24 22 21 42 42 H 1.09002 * 109.46789 * 21.80783 * 24 22 21 43 43 H 1.09001 * 109.46953 * 299.99601 * 25 22 21 44 44 H 1.08994 * 109.47299 * 60.00189 * 25 22 21 45 45 H 1.09001 * 109.46944 * 180.02562 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0182 0.0000 4 6 2.0852 -0.8066 -1.2004 5 7 3.4271 -1.2431 -0.7734 6 6 4.4640 -1.5667 -1.6073 7 1 4.3333 -1.5116 -2.6780 8 6 5.6831 -1.9654 -1.0765 9 7 5.8425 -2.0320 0.2283 10 14 7.0973 -2.4075 -2.2140 11 1 7.4397 -1.2340 -3.0572 12 1 8.2800 -2.7972 -1.4051 13 1 6.6964 -3.5421 -3.0842 14 6 3.4675 -1.2741 0.6959 15 6 2.0862 -0.8079 1.2022 16 1 1.4479 -1.6632 1.4239 17 7 2.2287 0.0496 2.3815 18 6 2.3023 -0.5005 3.6097 19 8 2.2499 -1.7086 3.7391 20 6 2.4460 0.3605 4.7938 21 6 2.4758 -0.1795 6.0088 22 6 2.1708 -1.6441 6.1903 23 6 3.3167 -2.4787 5.6151 24 6 0.8717 -1.9889 5.4591 25 6 2.0141 -1.9515 7.6809 26 1 -0.3633 0.4521 0.9229 27 1 -0.3634 0.5732 -0.8528 28 1 -0.3633 -1.0253 -0.0699 29 1 2.1559 -0.1720 -2.0837 30 1 1.4524 -1.6704 -1.4044 31 1 6.6944 -2.3103 0.5992 32 1 4.2426 -0.5998 1.0598 33 1 3.6662 -2.2883 1.0422 34 1 2.2701 1.0132 2.2783 35 1 2.5272 1.4310 4.6764 36 1 2.7186 0.4318 6.8654 37 1 3.8044 -1.9231 4.8141 38 1 4.0404 -2.6931 6.4015 39 1 2.9217 -3.4146 5.2198 40 1 0.9636 -2.9730 4.9997 41 1 0.0454 -1.9953 6.1700 42 1 0.6808 -1.2438 4.6868 43 1 2.9396 -1.7058 8.2017 44 1 1.1977 -1.3569 8.0906 45 1 1.7939 -3.0109 7.8121 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206651848.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:36:39 Heat of formation + Delta-G solvation = 25.002346 kcal Electronic energy + Delta-G solvation = -23276.326920 eV Core-core repulsion = 20102.888467 eV Total energy + Delta-G solvation = -3173.438453 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.20705 -38.07084 -36.25093 -33.75857 -32.62675 -31.39377 -30.34025 -27.75555 -27.03933 -26.88332 -25.61542 -24.09100 -22.68498 -20.68652 -19.91736 -19.73204 -18.05539 -16.84956 -16.60809 -15.74123 -15.11808 -14.74012 -14.54859 -14.20634 -13.80921 -13.66376 -13.38579 -13.15698 -12.78415 -12.72814 -12.29058 -12.12805 -12.03677 -11.66723 -11.61424 -11.30952 -11.13652 -10.92497 -10.74049 -10.69660 -10.60021 -10.47122 -10.34737 -10.17066 -9.94102 -9.86546 -9.65803 -9.19428 -8.95746 -8.57356 -8.20311 -6.79549 -5.65474 -3.00778 1.59883 3.43006 3.46977 3.48858 3.64224 3.78727 4.53358 4.77802 4.89489 5.09893 5.24038 5.28674 5.34881 5.48476 5.50622 5.55873 5.58330 5.78535 5.80164 5.90124 5.99778 6.02147 6.04371 6.11623 6.16542 6.19165 6.24787 6.34454 6.37804 6.40789 6.50227 6.54776 6.64083 6.66405 6.77593 6.88264 6.93324 7.04520 7.61307 7.66349 7.90285 8.06987 8.30169 8.76426 9.25637 9.86261 10.51484 11.44845 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.018077 B = 0.005058 C = 0.004209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.580977 B = 5534.111520 C = 6650.226667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.114 4.114 3 H 0.076 0.924 4 C 0.141 3.859 5 N -0.606 5.606 6 C -0.232 4.232 7 H 0.078 0.922 8 C -0.007 4.007 9 N -0.918 5.918 10 Si 0.911 3.089 11 H -0.285 1.285 12 H -0.290 1.290 13 H -0.285 1.285 14 C 0.175 3.825 15 C 0.124 3.876 16 H 0.085 0.915 17 N -0.711 5.711 18 C 0.528 3.472 19 O -0.515 6.515 20 C -0.217 4.217 21 C -0.058 4.058 22 C -0.039 4.039 23 C -0.112 4.112 24 C -0.112 4.112 25 C -0.141 4.141 26 H 0.050 0.950 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.040 0.960 30 H 0.021 0.979 31 H 0.252 0.748 32 H 0.049 0.951 33 H 0.047 0.953 34 H 0.393 0.607 35 H 0.122 0.878 36 H 0.120 0.880 37 H 0.071 0.929 38 H 0.028 0.972 39 H 0.058 0.942 40 H 0.062 0.938 41 H 0.024 0.976 42 H 0.060 0.940 43 H 0.052 0.948 44 H 0.050 0.950 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.292 6.094 11.016 16.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.134 4.134 3 H 0.094 0.906 4 C 0.014 3.986 5 N -0.333 5.333 6 C -0.360 4.360 7 H 0.095 0.905 8 C -0.203 4.203 9 N -0.565 5.565 10 Si 0.741 3.259 11 H -0.212 1.212 12 H -0.216 1.216 13 H -0.212 1.212 14 C 0.049 3.951 15 C 0.018 3.982 16 H 0.103 0.897 17 N -0.361 5.361 18 C 0.317 3.683 19 O -0.393 6.393 20 C -0.238 4.238 21 C -0.078 4.078 22 C -0.039 4.039 23 C -0.169 4.169 24 C -0.169 4.169 25 C -0.198 4.198 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.059 0.941 30 H 0.039 0.961 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.226 0.774 35 H 0.140 0.860 36 H 0.137 0.863 37 H 0.090 0.910 38 H 0.047 0.953 39 H 0.077 0.923 40 H 0.081 0.919 41 H 0.043 0.957 42 H 0.079 0.921 43 H 0.071 0.929 44 H 0.069 0.931 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.095 5.131 11.108 15.863 hybrid contribution 0.968 0.428 -0.628 1.231 sum -9.127 5.558 10.480 14.968 Atomic orbital electron populations 1.21689 0.95124 1.01711 1.00898 1.22604 0.94737 0.99492 0.96566 0.90560 1.21577 0.87685 0.94971 0.94322 1.44413 1.07802 1.79190 1.01913 1.19004 0.89401 1.38726 0.88899 0.90455 1.24814 0.97832 1.01694 0.95974 1.69969 1.24210 1.53156 1.09181 0.86218 0.81909 0.78264 0.79465 1.21211 1.21623 1.21152 1.21458 0.90172 1.00327 0.83127 1.22421 1.00046 0.92650 0.83034 0.89702 1.45870 1.74257 1.09866 1.06092 1.18386 0.77877 0.88477 0.83543 1.90929 1.48113 1.14679 1.85611 1.22627 1.08197 0.99670 0.93335 1.23807 0.91156 0.96487 0.96351 1.19673 0.97639 0.91781 0.94784 1.21910 0.95931 0.99815 0.99257 1.22128 0.93318 1.03182 0.98255 1.22017 1.01035 1.01562 0.95197 0.93131 0.92889 0.92651 0.94136 0.96139 0.93724 0.93325 0.93503 0.77363 0.85998 0.86255 0.91042 0.95264 0.92278 0.91874 0.95695 0.92087 0.92928 0.93057 0.92499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 9.31 37.16 0.35 -1.48 16 2 C -0.11 -1.91 3.25 -88.47 -0.29 -2.20 16 3 H 0.08 1.24 8.00 -51.93 -0.42 0.82 16 4 C 0.14 2.90 6.70 -2.53 -0.02 2.88 16 5 N -0.61 -15.72 3.39 -170.08 -0.58 -16.30 16 6 C -0.23 -6.58 10.28 -15.06 -0.15 -6.73 16 7 H 0.08 2.10 7.83 -52.48 -0.41 1.69 16 8 C -0.01 -0.19 5.49 -17.43 -0.10 -0.28 16 9 N -0.92 -27.75 10.31 55.49 0.57 -27.17 16 10 Si 0.91 22.49 29.55 -169.99 -5.02 17.46 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 12 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 13 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 14 C 0.17 4.36 5.12 -3.06 -0.02 4.35 16 15 C 0.12 2.35 2.70 -66.09 -0.18 2.17 16 16 H 0.08 1.71 7.59 -51.93 -0.39 1.32 16 17 N -0.71 -11.36 5.13 -53.20 -0.27 -11.63 16 18 C 0.53 8.58 5.86 -12.66 -0.07 8.51 16 19 O -0.51 -9.65 8.16 5.27 0.04 -9.61 16 20 C -0.22 -2.77 9.44 -37.80 -0.36 -3.13 16 21 C -0.06 -0.69 8.52 -36.13 -0.31 -1.00 16 22 C -0.04 -0.51 0.75 -155.66 -0.12 -0.62 16 23 C -0.11 -1.75 7.57 37.15 0.28 -1.46 16 24 C -0.11 -1.58 7.58 37.16 0.28 -1.29 16 25 C -0.14 -1.48 8.00 37.16 0.30 -1.18 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.05 0.76 8.08 -51.93 -0.42 0.34 16 29 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.02 0.43 7.99 -51.93 -0.41 0.01 16 31 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 32 H 0.05 1.35 7.27 -51.93 -0.38 0.97 16 33 H 0.05 1.36 7.50 -51.93 -0.39 0.97 16 34 H 0.39 5.23 8.50 -40.82 -0.35 4.88 16 35 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 36 H 0.12 1.10 8.00 -52.49 -0.42 0.68 16 37 H 0.07 1.31 5.61 -51.93 -0.29 1.02 16 38 H 0.03 0.40 7.79 -51.93 -0.40 0.00 16 39 H 0.06 0.99 7.10 -51.92 -0.37 0.62 16 40 H 0.06 0.99 6.74 -51.93 -0.35 0.64 16 41 H 0.02 0.30 7.72 -51.93 -0.40 -0.10 16 42 H 0.06 0.92 4.80 -51.93 -0.25 0.67 16 43 H 0.05 0.51 8.11 -51.93 -0.42 0.08 16 44 H 0.05 0.48 8.13 -51.93 -0.42 0.05 16 45 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 344.14 15.07 5.19 5.19 Total: -1.00 -31.66 344.14 -8.22 -39.88 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -7.75 Total: 3.68 kcal Atomic # 6 Polarization: -1.09 SS G_CDS: -0.40 Total: -1.48 kcal Atomic # 7 Polarization: -54.83 SS G_CDS: -0.28 Total: -55.11 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: 0.04 Total: -9.61 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.66 -8.22 -39.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206651848.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.878 kcal (2) G-P(sol) polarization free energy of solvation -31.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds