Wall clock time and date at job start Tue Mar 31 2020 02:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 110.91827 * 2 1 4 4 C 1.54912 * 111.00351 * 236.09966 * 2 1 3 5 5 N 1.47421 * 104.83149 * 204.91697 * 4 2 1 6 6 C 1.36943 * 125.64889 * 204.09455 * 5 4 2 7 7 H 1.08006 * 119.99668 * 0.02562 * 6 5 4 8 8 C 1.38811 * 120.00281 * 180.02562 * 6 5 4 9 9 N 1.31613 * 119.99683 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00029 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.46898 * 59.99937 * 10 8 6 12 12 H 1.48497 * 109.47090 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.46865 * 300.00208 * 10 8 6 14 14 C 1.47020 * 108.70752 * 24.12324 * 5 4 2 15 15 C 1.54324 * 107.26774 * 358.94598 * 14 5 4 16 16 H 1.08997 * 110.72396 * 96.34798 * 15 14 5 17 17 N 1.46508 * 110.71888 * 219.44067 * 15 14 5 18 18 C 1.34776 * 119.99471 * 273.54534 * 17 15 14 19 19 O 1.21610 * 120.00822 * 359.97438 * 18 17 15 20 20 C 1.47108 * 119.99470 * 179.97438 * 18 17 15 21 21 C 1.32997 * 119.99723 * 177.86081 * 20 18 17 22 22 C 1.50698 * 120.00199 * 351.44859 * 21 20 18 23 23 C 1.52994 * 109.47196 * 70.54836 * 22 21 20 24 24 C 1.53004 * 109.47046 * 310.54879 * 22 21 20 25 25 C 1.53001 * 109.46959 * 190.55005 * 22 21 20 26 26 H 1.09000 * 109.47038 * 296.09738 * 1 2 3 27 27 H 1.08993 * 109.47460 * 56.09321 * 1 2 3 28 28 H 1.09000 * 109.46954 * 176.10207 * 1 2 3 29 29 H 1.08999 * 110.36778 * 86.07749 * 4 2 1 30 30 H 1.09003 * 110.45926 * 323.80307 * 4 2 1 31 31 H 0.97000 * 119.99792 * 180.02562 * 9 8 6 32 32 H 1.08990 * 109.88656 * 239.52480 * 14 5 4 33 33 H 1.09000 * 110.00915 * 118.42824 * 14 5 4 34 34 H 0.96997 * 119.99634 * 93.54666 * 17 15 14 35 35 H 1.07997 * 119.99957 * 357.86066 * 20 18 17 36 36 H 1.07999 * 119.99293 * 171.44884 * 21 20 18 37 37 H 1.08999 * 109.47171 * 332.09715 * 23 22 21 38 38 H 1.09000 * 109.47500 * 92.09783 * 23 22 21 39 39 H 1.09007 * 109.47152 * 212.09938 * 23 22 21 40 40 H 1.08996 * 109.47289 * 141.80743 * 24 22 21 41 41 H 1.09004 * 109.46935 * 261.81372 * 24 22 21 42 42 H 1.09002 * 109.46789 * 21.80783 * 24 22 21 43 43 H 1.09001 * 109.46953 * 299.99601 * 25 22 21 44 44 H 1.08994 * 109.47299 * 60.00189 * 25 22 21 45 45 H 1.09001 * 109.46944 * 180.02562 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0182 0.0000 4 6 2.0852 -0.8066 -1.2004 5 7 3.4271 -1.2431 -0.7734 6 6 4.4640 -1.5667 -1.6073 7 1 4.3333 -1.5116 -2.6780 8 6 5.6831 -1.9654 -1.0765 9 7 5.8425 -2.0320 0.2283 10 14 7.0973 -2.4075 -2.2140 11 1 7.4397 -1.2340 -3.0572 12 1 8.2800 -2.7972 -1.4051 13 1 6.6964 -3.5421 -3.0842 14 6 3.4675 -1.2741 0.6959 15 6 2.0862 -0.8079 1.2022 16 1 1.4479 -1.6632 1.4239 17 7 2.2287 0.0496 2.3815 18 6 2.3023 -0.5005 3.6097 19 8 2.2499 -1.7086 3.7391 20 6 2.4460 0.3605 4.7938 21 6 2.4758 -0.1795 6.0088 22 6 2.1708 -1.6441 6.1903 23 6 3.3167 -2.4787 5.6151 24 6 0.8717 -1.9889 5.4591 25 6 2.0141 -1.9515 7.6809 26 1 -0.3633 0.4521 0.9229 27 1 -0.3634 0.5732 -0.8528 28 1 -0.3633 -1.0253 -0.0699 29 1 2.1559 -0.1720 -2.0837 30 1 1.4524 -1.6704 -1.4044 31 1 6.6944 -2.3103 0.5992 32 1 4.2426 -0.5998 1.0598 33 1 3.6662 -2.2883 1.0422 34 1 2.2701 1.0132 2.2783 35 1 2.5272 1.4310 4.6764 36 1 2.7186 0.4318 6.8654 37 1 3.8044 -1.9231 4.8141 38 1 4.0404 -2.6931 6.4015 39 1 2.9217 -3.4146 5.2198 40 1 0.9636 -2.9730 4.9997 41 1 0.0454 -1.9953 6.1700 42 1 0.6808 -1.2438 4.6868 43 1 2.9396 -1.7058 8.2017 44 1 1.1977 -1.3569 8.0906 45 1 1.7939 -3.0109 7.8121 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206651848.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:36:38 Heat of formation + Delta-G solvation = 4.646230 kcal Electronic energy + Delta-G solvation = -23277.209627 eV Core-core repulsion = 20102.888467 eV Total energy + Delta-G solvation = -3174.321161 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.48005 -39.62781 -37.52234 -35.47146 -34.23907 -32.51471 -32.12952 -29.48218 -28.11377 -28.01824 -27.39038 -25.66271 -24.07318 -22.17977 -21.47407 -21.19548 -19.26239 -18.88363 -17.78230 -17.18347 -16.94649 -16.20607 -15.79851 -15.65653 -15.38353 -14.81280 -14.75026 -14.54672 -14.28602 -14.03932 -13.83697 -13.48678 -13.32794 -13.05066 -13.02736 -12.86621 -12.71601 -12.56988 -12.33734 -12.17652 -11.87750 -11.81668 -11.74599 -11.65668 -11.56208 -11.47345 -11.37160 -10.74791 -10.33799 -10.16524 -9.65512 -8.93272 -7.85183 -5.23601 0.55778 1.42574 1.46951 1.53250 2.33846 2.49285 2.55166 3.32452 3.60554 3.75642 3.79636 3.93898 4.08701 4.12968 4.19602 4.25830 4.50018 4.53983 4.62746 4.66190 4.74129 4.82499 4.86525 4.87593 4.95459 5.00613 5.06402 5.08187 5.24095 5.24915 5.27353 5.29024 5.36006 5.41578 5.45830 5.50149 5.56149 5.59086 5.67584 5.80202 5.87718 6.16238 6.80769 7.06123 7.51224 7.75478 8.39240 9.23346 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.018077 B = 0.005058 C = 0.004209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.580977 B = 5534.111520 C = 6650.226667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.094 4.094 3 H 0.090 0.910 4 C 0.132 3.868 5 N -0.629 5.629 6 C -0.246 4.246 7 H 0.087 0.913 8 C -0.068 4.068 9 N -0.952 5.952 10 Si 0.980 3.020 11 H -0.271 1.271 12 H -0.297 1.297 13 H -0.277 1.277 14 C 0.192 3.808 15 C 0.142 3.858 16 H 0.070 0.930 17 N -0.705 5.705 18 C 0.516 3.484 19 O -0.548 6.548 20 C -0.226 4.226 21 C -0.047 4.047 22 C -0.043 4.043 23 C -0.105 4.105 24 C -0.106 4.106 25 C -0.135 4.135 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.049 0.951 29 H 0.053 0.947 30 H 0.023 0.977 31 H 0.244 0.756 32 H 0.013 0.987 33 H -0.013 1.013 34 H 0.409 0.591 35 H 0.157 0.843 36 H 0.160 0.840 37 H 0.036 0.964 38 H 0.043 0.957 39 H 0.033 0.967 40 H 0.033 0.967 41 H 0.045 0.955 42 H 0.048 0.952 43 H 0.065 0.935 44 H 0.071 0.929 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.660 8.410 11.745 18.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.114 4.114 3 H 0.108 0.892 4 C 0.007 3.993 5 N -0.356 5.356 6 C -0.375 4.375 7 H 0.105 0.895 8 C -0.261 4.261 9 N -0.601 5.601 10 Si 0.808 3.192 11 H -0.197 1.197 12 H -0.223 1.223 13 H -0.203 1.203 14 C 0.066 3.934 15 C 0.036 3.964 16 H 0.088 0.912 17 N -0.356 5.356 18 C 0.307 3.693 19 O -0.429 6.429 20 C -0.246 4.246 21 C -0.067 4.067 22 C -0.043 4.043 23 C -0.162 4.162 24 C -0.163 4.163 25 C -0.192 4.192 26 H 0.087 0.913 27 H 0.095 0.905 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.041 0.959 31 H 0.053 0.947 32 H 0.031 0.969 33 H 0.005 0.995 34 H 0.245 0.755 35 H 0.174 0.826 36 H 0.178 0.822 37 H 0.055 0.945 38 H 0.062 0.938 39 H 0.052 0.948 40 H 0.052 0.948 41 H 0.064 0.936 42 H 0.067 0.933 43 H 0.084 0.916 44 H 0.090 0.910 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.506 7.489 11.817 18.114 hybrid contribution 1.379 -0.379 -0.876 1.677 sum -10.127 7.109 10.941 16.517 Atomic orbital electron populations 1.21631 0.91704 1.02139 1.02984 1.22521 0.97268 0.98811 0.92789 0.89196 1.21852 0.85288 0.95707 0.96468 1.44751 1.09446 1.79211 1.02175 1.19494 0.90278 1.37892 0.89836 0.89492 1.25729 1.00679 1.02276 0.97427 1.70249 1.24151 1.54512 1.11164 0.85126 0.78154 0.78423 0.77490 1.19690 1.22327 1.20268 1.21079 0.92895 0.96270 0.83187 1.21921 0.95951 0.93435 0.85107 0.91203 1.45726 1.74338 1.10344 1.05209 1.19173 0.76874 0.88671 0.84538 1.90940 1.49340 1.16452 1.86126 1.22728 1.09282 1.00787 0.91815 1.24131 0.89376 0.95784 0.97369 1.19706 0.95730 0.92508 0.96388 1.21798 0.97115 0.98758 0.98561 1.22019 0.94787 1.01139 0.98350 1.21966 1.02535 1.01817 0.92899 0.91280 0.90470 0.93171 0.92860 0.95883 0.94714 0.96869 0.99463 0.75468 0.82564 0.82230 0.94476 0.93817 0.94773 0.94786 0.93635 0.93317 0.91611 0.91030 0.92857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.02 9.31 71.98 0.67 -2.35 16 2 C -0.09 -3.03 3.25 -9.40 -0.03 -3.06 16 3 H 0.09 2.69 8.00 -2.38 -0.02 2.67 16 4 C 0.13 5.37 6.70 86.86 0.58 5.95 16 5 N -0.63 -33.66 3.39 -692.00 -2.35 -36.01 16 6 C -0.25 -14.29 10.28 84.03 0.86 -13.42 16 7 H 0.09 4.74 7.83 -2.91 -0.02 4.71 16 8 C -0.07 -4.06 5.49 84.86 0.47 -3.59 16 9 N -0.95 -60.75 10.31 21.65 0.22 -60.53 16 10 Si 0.98 47.34 29.55 68.60 2.03 49.37 16 11 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 12 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 13 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 14 C 0.19 10.19 5.12 86.73 0.44 10.63 16 15 C 0.14 5.55 2.70 46.18 0.12 5.67 16 16 H 0.07 2.94 7.59 -2.39 -0.02 2.93 16 17 N -0.70 -22.52 5.13 -440.49 -2.26 -24.78 16 18 C 0.52 17.01 5.86 86.57 0.51 17.52 16 19 O -0.55 -21.81 8.16 -4.06 -0.03 -21.84 16 20 C -0.23 -5.32 9.44 23.43 0.22 -5.10 16 21 C -0.05 -1.00 8.52 24.52 0.21 -0.79 16 22 C -0.04 -1.09 0.75 -52.93 -0.04 -1.13 16 23 C -0.11 -3.42 7.57 71.98 0.55 -2.87 16 24 C -0.11 -2.98 7.58 71.98 0.55 -2.44 16 25 C -0.14 -2.48 8.00 71.98 0.58 -1.90 16 26 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.08 1.51 8.14 -2.39 -0.02 1.50 16 28 H 0.05 1.26 8.08 -2.39 -0.02 1.24 16 29 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.02 0.94 7.99 -2.39 -0.02 0.92 16 31 H 0.24 15.25 8.31 -92.71 -0.77 14.48 16 32 H 0.01 0.78 7.27 -2.39 -0.02 0.76 16 33 H -0.01 -0.82 7.50 -2.39 -0.02 -0.84 16 34 H 0.41 10.28 8.50 -92.71 -0.79 9.50 16 35 H 0.16 2.57 8.06 -2.91 -0.02 2.54 16 36 H 0.16 2.15 8.00 -2.91 -0.02 2.13 16 37 H 0.04 1.44 5.61 -2.39 -0.01 1.43 16 38 H 0.04 1.23 7.79 -2.39 -0.02 1.22 16 39 H 0.03 1.23 7.10 -2.38 -0.02 1.21 16 40 H 0.03 1.12 6.74 -2.39 -0.02 1.11 16 41 H 0.04 1.06 7.72 -2.38 -0.02 1.04 16 42 H 0.05 1.47 4.80 -2.39 -0.01 1.46 16 43 H 0.06 1.05 8.11 -2.39 -0.02 1.03 16 44 H 0.07 1.05 8.13 -2.39 -0.02 1.03 16 45 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -75.30 344.14 3.46 -71.84 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: 0.17 Total: 18.82 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: 5.68 Total: 3.13 kcal Atomic # 7 Polarization: -116.94 SS G_CDS: -4.38 Total: -121.32 kcal Atomic # 8 Polarization: -21.81 SS G_CDS: -0.03 Total: -21.84 kcal Atomic # 14 Polarization: 47.34 SS G_CDS: 2.03 Total: 49.37 kcal Total: -75.30 3.46 -71.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206651848.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.483 kcal (2) G-P(sol) polarization free energy of solvation -75.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds