Wall clock time and date at job start Tue Mar 31 2020 02:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 110.63963 * 2 1 4 4 C 1.54334 * 110.85086 * 236.83407 * 2 1 3 5 5 N 1.47024 * 107.26646 * 219.67074 * 4 2 1 6 6 C 1.36932 * 125.64836 * 178.85202 * 5 4 2 7 7 H 1.08001 * 120.00172 * 347.84778 * 6 5 4 8 8 C 1.38810 * 119.99990 * 167.85563 * 6 5 4 9 9 N 1.31624 * 119.99867 * 326.24876 * 8 6 5 10 10 Si 1.86800 * 120.00129 * 145.98140 * 8 6 5 11 11 H 1.48506 * 109.47282 * 359.97438 * 10 8 6 12 12 H 1.48494 * 109.47535 * 119.99869 * 10 8 6 13 13 H 1.48503 * 109.47098 * 239.99494 * 10 8 6 14 14 C 1.47422 * 108.70201 * 358.58505 * 5 4 2 15 15 C 1.54913 * 104.83247 * 24.35686 * 14 5 4 16 16 H 1.08995 * 111.00610 * 81.06475 * 15 14 5 17 17 N 1.46497 * 111.00373 * 204.87955 * 15 14 5 18 18 C 1.34777 * 120.00030 * 273.54696 * 17 15 14 19 19 O 1.21279 * 120.00139 * 359.97438 * 18 17 15 20 20 C 1.50698 * 120.00191 * 180.02562 * 18 17 15 21 21 C 1.53001 * 109.47494 * 179.97438 * 20 18 17 22 22 C 1.52992 * 109.47633 * 179.97438 * 21 20 18 23 23 C 1.53780 * 113.61413 * 274.13709 * 22 21 20 24 24 C 1.53956 * 87.02100 * 220.04640 * 23 22 21 25 25 C 1.53780 * 113.61638 * 176.53060 * 22 21 20 26 26 H 1.09000 * 109.47522 * 296.85818 * 1 2 3 27 27 H 1.09001 * 109.47262 * 56.85915 * 1 2 3 28 28 H 1.09001 * 109.47218 * 176.85755 * 1 2 3 29 29 H 1.09007 * 109.99211 * 100.19376 * 4 2 1 30 30 H 1.09002 * 109.77986 * 339.02692 * 4 2 1 31 31 H 0.96994 * 119.99575 * 353.97716 * 9 8 6 32 32 H 1.08998 * 110.36625 * 143.19544 * 14 5 4 33 33 H 1.08997 * 110.36749 * 265.40909 * 14 5 4 34 34 H 0.97006 * 120.00267 * 93.54539 * 17 15 14 35 35 H 1.08998 * 109.47467 * 299.99613 * 20 18 17 36 36 H 1.08997 * 109.47611 * 59.99448 * 20 18 17 37 37 H 1.09008 * 109.46766 * 300.00361 * 21 20 18 38 38 H 1.08997 * 109.46928 * 59.99292 * 21 20 18 39 39 H 1.09007 * 112.84909 * 45.32906 * 22 21 20 40 40 H 1.09002 * 113.61739 * 334.56761 * 23 22 21 41 41 H 1.09008 * 113.61407 * 105.46785 * 23 22 21 42 42 H 1.09004 * 113.53612 * 270.81045 * 24 23 22 43 43 H 1.08997 * 113.66627 * 139.93501 * 24 23 22 44 44 H 1.09003 * 113.61185 * 254.52754 * 25 22 21 45 45 H 1.09001 * 113.61731 * 25.43007 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0793 -0.7890 -1.2073 5 7 3.2445 -1.5519 -0.7364 6 6 4.0043 -2.3994 -1.4977 7 1 3.6582 -2.7053 -2.4739 8 6 5.2194 -2.8653 -1.0147 9 7 5.9612 -2.0954 -0.2469 10 14 5.7985 -4.5875 -1.4484 11 1 4.7870 -5.2468 -2.3131 12 1 7.0924 -4.5071 -2.1726 13 1 5.9761 -5.3781 -0.2039 14 6 3.4633 -1.2485 0.6896 15 6 2.0789 -0.7934 1.2151 16 1 1.4452 -1.6511 1.4403 17 7 2.2214 0.0730 2.3878 18 6 2.3156 -0.4687 3.6184 19 8 2.2819 -1.6733 3.7549 20 6 2.4615 0.4225 4.8248 21 6 2.5460 -0.4378 6.0872 22 6 2.6949 0.4669 7.3120 23 6 4.1506 0.8593 7.6147 24 6 3.8076 0.6697 9.1036 25 6 2.7039 -0.2984 8.6458 26 1 -0.3634 0.4643 0.9168 27 1 -0.3634 0.5618 -0.8605 28 1 -0.3634 -1.0261 -0.0563 29 1 2.3814 -0.1003 -1.9964 30 1 1.3156 -1.4714 -1.5804 31 1 5.7025 -1.1740 -0.0896 32 1 3.7961 -2.1404 1.2205 33 1 4.1945 -0.4477 0.7992 34 1 2.2480 1.0365 2.2787 35 1 3.3695 1.0179 4.7291 36 1 1.5986 1.0848 4.8940 37 1 1.6377 -1.0329 6.1828 38 1 3.4088 -1.1003 6.0183 39 1 2.0082 1.3134 7.2989 40 1 4.8826 0.1435 7.2407 41 1 4.3897 1.8890 7.3485 42 1 3.4262 1.5725 9.5808 43 1 4.5998 0.1889 9.6773 44 1 1.7767 -0.2021 9.2108 45 1 3.0396 -1.3314 8.5542 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206809613.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:36:30 Heat of formation + Delta-G solvation = -38.561601 kcal Electronic energy + Delta-G solvation = -22285.167511 eV Core-core repulsion = 19108.972718 eV Total energy + Delta-G solvation = -3176.194793 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.13859 -39.83769 -39.16501 -35.85989 -34.46057 -33.62482 -32.19262 -29.85307 -27.48570 -27.09456 -26.40829 -25.26675 -23.19964 -22.14007 -21.68539 -20.86030 -20.25041 -19.62332 -17.99508 -17.49543 -16.79618 -16.42127 -16.21150 -15.80736 -15.62070 -15.47478 -14.88496 -14.70168 -14.55319 -14.15377 -14.05775 -13.67113 -13.42192 -13.29675 -13.04421 -12.87025 -12.72421 -12.53740 -12.28709 -12.18192 -12.10928 -11.91033 -11.90973 -11.71004 -11.61088 -11.40389 -11.16367 -10.97251 -10.75471 -10.50727 -10.10770 -9.09743 -8.45345 -5.34132 1.51463 1.60227 1.65558 1.77025 2.14109 2.59292 3.09650 3.47564 3.51543 3.68306 3.76767 3.79845 3.85828 3.94261 3.97662 4.01685 4.25794 4.30678 4.39478 4.44745 4.51476 4.66764 4.71847 4.77700 4.86859 4.91429 4.91706 4.92875 4.94672 5.01833 5.04468 5.05851 5.11461 5.16139 5.19496 5.31675 5.36244 5.44801 5.53019 5.62728 5.70040 6.23212 6.58470 6.81386 7.30665 7.64558 8.22625 8.89152 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.016722 B = 0.003981 C = 0.003390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.989579 B = 7032.593471 C = 8257.148599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.090 4.090 3 H 0.100 0.900 4 C 0.132 3.868 5 N -0.626 5.626 6 C -0.355 4.355 7 H 0.065 0.935 8 C -0.077 4.077 9 N -0.935 5.935 10 Si 1.111 2.889 11 H -0.270 1.270 12 H -0.284 1.284 13 H -0.294 1.294 14 C 0.151 3.849 15 C 0.147 3.853 16 H 0.071 0.929 17 N -0.705 5.705 18 C 0.501 3.499 19 O -0.593 6.593 20 C -0.125 4.125 21 C -0.092 4.092 22 C -0.103 4.103 23 C -0.144 4.144 24 C -0.139 4.139 25 C -0.143 4.143 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.046 0.954 29 H 0.026 0.974 30 H 0.033 0.967 31 H 0.253 0.747 32 H -0.001 1.001 33 H 0.007 0.993 34 H 0.417 0.583 35 H 0.110 0.890 36 H 0.129 0.871 37 H 0.056 0.944 38 H 0.041 0.959 39 H 0.111 0.889 40 H 0.065 0.935 41 H 0.077 0.923 42 H 0.093 0.907 43 H 0.064 0.936 44 H 0.075 0.925 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.182 12.366 14.405 22.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.109 4.109 3 H 0.118 0.882 4 C 0.007 3.993 5 N -0.353 5.353 6 C -0.483 4.483 7 H 0.083 0.917 8 C -0.273 4.273 9 N -0.577 5.577 10 Si 0.935 3.065 11 H -0.195 1.195 12 H -0.211 1.211 13 H -0.221 1.221 14 C 0.024 3.976 15 C 0.040 3.960 16 H 0.089 0.911 17 N -0.357 5.357 18 C 0.290 3.710 19 O -0.473 6.473 20 C -0.164 4.164 21 C -0.131 4.131 22 C -0.121 4.121 23 C -0.182 4.182 24 C -0.176 4.176 25 C -0.181 4.181 26 H 0.094 0.906 27 H 0.097 0.903 28 H 0.065 0.935 29 H 0.044 0.956 30 H 0.051 0.949 31 H 0.063 0.937 32 H 0.017 0.983 33 H 0.025 0.975 34 H 0.255 0.745 35 H 0.128 0.872 36 H 0.147 0.853 37 H 0.075 0.925 38 H 0.060 0.940 39 H 0.130 0.870 40 H 0.083 0.917 41 H 0.096 0.904 42 H 0.112 0.888 43 H 0.082 0.918 44 H 0.094 0.906 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -10.006 10.342 14.673 20.552 hybrid contribution -0.528 1.048 -0.688 1.360 sum -10.534 11.390 13.985 20.887 Atomic orbital electron populations 1.21694 0.91385 1.02140 1.03406 1.22361 0.97918 0.98948 0.91693 0.88227 1.21627 0.88811 0.93103 0.95744 1.44752 1.32737 1.51982 1.05840 1.19986 1.02201 1.23410 1.02706 0.91703 1.27073 0.92661 1.07952 0.99634 1.70852 1.36425 1.07459 1.42948 0.82961 0.75656 0.71957 0.75900 1.19456 1.21053 1.22072 1.21588 0.95158 0.95845 0.84987 1.21877 0.95065 0.93614 0.85401 0.91066 1.45794 1.74171 1.10688 1.05081 1.21729 0.74339 0.89253 0.85705 1.90706 1.51578 1.18106 1.86926 1.21701 1.06485 0.98189 0.90018 1.21276 1.01551 0.97267 0.92966 1.22587 0.97905 0.98702 0.92916 1.23047 0.96332 1.01910 0.96876 1.22847 0.98572 1.00013 0.96153 1.22957 0.99776 0.98473 0.96871 0.90592 0.90305 0.93478 0.95550 0.94854 0.93709 0.98278 0.97541 0.74501 0.87191 0.85255 0.92479 0.94048 0.87043 0.91656 0.90385 0.88810 0.91760 0.90612 0.91451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.95 9.16 71.98 0.66 -2.30 16 2 C -0.09 -2.77 3.16 -9.60 -0.03 -2.80 16 3 H 0.10 2.63 8.00 -2.38 -0.02 2.61 16 4 C 0.13 5.47 6.85 86.73 0.59 6.07 16 5 N -0.63 -33.75 3.33 -691.96 -2.30 -36.05 16 6 C -0.35 -21.33 9.97 84.03 0.84 -20.49 16 7 H 0.07 3.84 8.02 -2.91 -0.02 3.82 16 8 C -0.08 -4.67 4.96 84.86 0.42 -4.25 16 9 N -0.94 -60.71 12.86 21.65 0.28 -60.43 16 10 Si 1.11 54.64 30.03 68.60 2.06 56.70 16 11 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 12 H -0.28 -13.36 7.11 99.48 0.71 -12.66 16 13 H -0.29 -14.57 7.11 99.48 0.71 -13.87 16 14 C 0.15 7.76 5.03 86.86 0.44 8.19 16 15 C 0.15 5.56 2.77 46.38 0.13 5.69 16 16 H 0.07 3.03 7.63 -2.39 -0.02 3.01 16 17 N -0.71 -20.46 5.23 -435.97 -2.28 -22.74 16 18 C 0.50 15.76 7.83 87.66 0.69 16.45 16 19 O -0.59 -25.60 15.73 -3.03 -0.05 -25.64 16 20 C -0.12 -2.46 5.70 29.85 0.17 -2.29 16 21 C -0.09 -2.06 4.33 30.59 0.13 -1.93 16 22 C -0.10 -1.63 3.64 -10.27 -0.04 -1.67 16 23 C -0.14 -2.31 7.65 31.18 0.24 -2.08 16 24 C -0.14 -1.95 8.09 31.18 0.25 -1.69 16 25 C -0.14 -2.29 7.64 31.12 0.24 -2.05 16 26 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.05 1.20 8.07 -2.39 -0.02 1.18 16 29 H 0.03 1.09 8.14 -2.38 -0.02 1.07 16 30 H 0.03 1.36 7.77 -2.39 -0.02 1.34 16 31 H 0.25 16.65 6.43 -92.71 -0.60 16.05 16 32 H 0.00 -0.08 7.81 -2.39 -0.02 -0.10 16 33 H 0.01 0.37 7.02 -2.39 -0.02 0.35 16 34 H 0.42 8.46 8.52 -92.70 -0.79 7.67 16 35 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.13 1.58 8.14 -2.39 -0.02 1.57 16 37 H 0.06 1.41 8.10 -2.38 -0.02 1.39 16 38 H 0.04 1.16 7.83 -2.39 -0.02 1.14 16 39 H 0.11 1.30 8.14 -2.38 -0.02 1.28 16 40 H 0.06 1.27 7.92 -2.39 -0.02 1.26 16 41 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 42 H 0.09 1.03 8.14 -2.38 -0.02 1.01 16 43 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 45 H 0.07 1.26 8.10 -2.39 -0.02 1.24 16 Total: -1.00 -80.51 357.88 2.77 -77.74 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: 0.33 Total: 15.56 kcal Atomic # 6 Polarization: -9.88 SS G_CDS: 4.73 Total: -5.15 kcal Atomic # 7 Polarization: -114.91 SS G_CDS: -4.30 Total: -119.21 kcal Atomic # 8 Polarization: -25.60 SS G_CDS: -0.05 Total: -25.64 kcal Atomic # 14 Polarization: 54.64 SS G_CDS: 2.06 Total: 56.70 kcal Total: -80.51 2.77 -77.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206809613.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.179 kcal (2) G-P(sol) polarization free energy of solvation -80.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds