Wall clock time and date at job start Tue Mar 31 2020 02:36:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50707 * 119.99752 * 2 1 4 4 C 1.52998 * 109.47121 * 0.02562 * 3 2 1 5 5 C 1.52997 * 109.46733 * 240.00019 * 3 2 1 6 6 C 1.53005 * 109.46904 * 120.00156 * 3 2 1 7 7 C 1.50700 * 109.46652 * 179.97438 * 6 3 2 8 8 O 1.21284 * 120.00171 * 0.02562 * 7 6 3 9 9 N 1.34774 * 120.00161 * 179.97438 * 7 6 3 10 10 C 1.46494 * 120.00450 * 179.97438 * 9 7 6 11 11 H 1.09001 * 110.88389 * 37.43292 * 10 9 7 12 12 C 1.54910 * 111.00885 * 273.54879 * 10 9 7 13 13 N 1.47420 * 104.83518 * 204.87717 * 12 10 9 14 14 C 1.36935 * 125.65287 * 204.09054 * 13 12 10 15 15 H 1.07996 * 120.00120 * 168.12855 * 14 13 12 16 16 C 1.38816 * 119.99635 * 348.13266 * 14 13 12 17 17 N 1.31621 * 119.99948 * 326.27381 * 16 14 13 18 18 Si 1.86802 * 119.99914 * 145.99645 * 16 14 13 19 19 H 1.48496 * 109.47113 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.46970 * 120.00125 * 18 16 14 21 21 H 1.48501 * 109.47141 * 239.99794 * 18 16 14 22 22 C 1.47028 * 108.70211 * 24.35267 * 13 12 10 23 23 C 1.54331 * 107.26619 * 358.58814 * 22 13 12 24 24 H 1.09007 * 110.51892 * 96.44902 * 23 22 13 25 25 C 1.53003 * 111.00276 * 219.59981 * 23 22 13 26 26 H 1.07997 * 119.99975 * 359.97438 * 1 2 3 27 27 H 1.08004 * 119.99688 * 180.02562 * 1 2 3 28 28 H 1.07994 * 120.00286 * 180.02562 * 2 1 3 29 29 H 1.09004 * 109.47082 * 180.02562 * 4 3 2 30 30 H 1.09001 * 109.47433 * 300.00389 * 4 3 2 31 31 H 1.09001 * 109.47283 * 59.99904 * 4 3 2 32 32 H 1.09000 * 109.47538 * 299.99911 * 5 3 2 33 33 H 1.09002 * 109.47284 * 60.00464 * 5 3 2 34 34 H 1.09004 * 109.46861 * 179.97438 * 5 3 2 35 35 H 1.09000 * 109.47207 * 60.00187 * 6 3 2 36 36 H 1.08993 * 109.47068 * 299.99546 * 6 3 2 37 37 H 0.97004 * 119.99362 * 0.02562 * 9 7 6 38 38 H 1.09002 * 110.36676 * 86.03684 * 12 10 9 39 39 H 1.08996 * 110.36087 * 323.71558 * 12 10 9 40 40 H 0.96996 * 119.99512 * 353.97663 * 17 16 14 41 41 H 1.09002 * 109.87711 * 118.12928 * 22 13 12 42 42 H 1.09000 * 109.88319 * 239.29701 * 22 13 12 43 43 H 1.09004 * 109.47162 * 173.78216 * 25 23 22 44 44 H 1.08999 * 109.46709 * 293.77630 * 25 23 22 45 45 H 1.08995 * 109.47061 * 53.77990 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 1.0692 2.4681 0.0006 5 6 2.9430 1.3862 -1.2492 6 6 2.9431 1.3862 1.2493 7 6 3.6970 2.6911 1.2489 8 8 3.5453 3.4789 0.3393 9 7 4.5391 2.9832 2.2598 10 6 5.2724 4.2514 2.2593 11 1 4.6530 5.0582 1.8675 12 6 6.5941 4.1282 1.4608 13 7 7.4724 5.1711 2.0215 14 6 8.5270 5.7587 1.3753 15 1 8.9906 6.6414 1.7902 16 6 9.0002 5.2196 0.1868 17 7 8.9704 3.9175 -0.0031 18 14 9.6722 6.3427 -1.1460 19 1 9.5905 7.7541 -0.6916 20 1 11.0891 5.9927 -1.4204 21 1 8.8718 6.1741 -2.3854 22 6 7.0322 5.4715 3.3918 23 6 5.7968 4.5922 3.6792 24 1 6.0881 3.6861 4.2105 25 6 4.7441 5.3683 4.4733 26 1 -0.5400 0.9353 0.0004 27 1 -0.5400 -0.9354 0.0004 28 1 1.8500 -0.9352 -0.0004 29 1 1.6142 3.4121 0.0002 30 1 0.4421 2.4105 -0.8891 31 1 0.4429 2.4101 0.8909 32 1 3.6514 0.5577 -1.2493 33 1 2.3164 1.3285 -2.1392 34 1 3.4877 2.3304 -1.2495 35 1 3.6515 0.5578 1.2492 36 1 2.3165 1.3285 2.1392 37 1 4.6601 2.3532 2.9875 38 1 6.4158 4.3118 0.4013 39 1 7.0350 3.1422 1.6069 40 1 8.7001 3.3283 0.7184 41 1 7.8293 5.2361 4.0971 42 1 6.7622 6.5245 3.4721 43 1 3.8415 4.7644 4.5669 44 1 5.1330 5.5966 5.4656 45 1 4.5080 6.2965 3.9531 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207158290.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:36:45 Heat of formation + Delta-G solvation = -3.224772 kcal Electronic energy + Delta-G solvation = -22964.882796 eV Core-core repulsion = 19790.220322 eV Total energy + Delta-G solvation = -3174.662473 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.12963 -38.24914 -36.75962 -34.08863 -32.81822 -31.32672 -30.37836 -28.82979 -27.20786 -27.03531 -25.51384 -23.68804 -22.45627 -20.65096 -20.18547 -19.51587 -18.20292 -17.48966 -16.86343 -15.98918 -15.45568 -15.20969 -14.55791 -14.39948 -14.05035 -13.71283 -13.53367 -13.36437 -13.05068 -12.88470 -12.75510 -12.44746 -12.01654 -11.81450 -11.68344 -11.46864 -11.37518 -11.09855 -10.92357 -10.78513 -10.64743 -10.60093 -10.55889 -10.40555 -10.06608 -9.97931 -9.64168 -9.47961 -9.23292 -8.59646 -8.29425 -6.94053 -6.12255 -3.05622 2.17033 2.89363 3.42635 3.56346 3.61046 3.73595 4.61755 4.66515 4.74519 4.89609 4.93994 5.15904 5.20071 5.21281 5.28639 5.31858 5.38765 5.51712 5.61683 5.66296 5.72840 5.80680 5.86855 5.88016 6.00459 6.02537 6.06747 6.09869 6.17697 6.23405 6.30944 6.45612 6.50594 6.56654 6.60033 6.72334 6.77165 6.84984 7.02339 7.12238 7.78513 7.82852 8.50051 8.55173 9.02967 9.84924 10.39348 11.22120 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.017915 B = 0.004729 C = 0.003991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.526977 B = 5918.877381 C = 7014.565865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.141 4.141 3 C -0.019 4.019 4 C -0.155 4.155 5 C -0.151 4.151 6 C -0.128 4.128 7 C 0.512 3.488 8 O -0.527 6.527 9 N -0.718 5.718 10 C 0.131 3.869 11 H 0.093 0.907 12 C 0.142 3.858 13 N -0.601 5.601 14 C -0.345 4.345 15 H 0.068 0.932 16 C -0.020 4.020 17 N -0.907 5.907 18 Si 1.060 2.940 19 H -0.291 1.291 20 H -0.295 1.295 21 H -0.289 1.289 22 C 0.142 3.858 23 C -0.111 4.111 24 H 0.074 0.926 25 C -0.137 4.137 26 H 0.103 0.897 27 H 0.093 0.907 28 H 0.106 0.894 29 H 0.088 0.912 30 H 0.052 0.948 31 H 0.046 0.954 32 H 0.048 0.952 33 H 0.049 0.951 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.395 0.605 38 H 0.056 0.944 39 H 0.023 0.977 40 H 0.267 0.733 41 H 0.024 0.976 42 H 0.030 0.970 43 H 0.051 0.949 44 H 0.054 0.946 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.584 -6.923 6.011 18.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.159 4.159 3 C -0.020 4.020 4 C -0.212 4.212 5 C -0.208 4.208 6 C -0.168 4.168 7 C 0.299 3.701 8 O -0.404 6.404 9 N -0.369 5.369 10 C 0.025 3.975 11 H 0.111 0.889 12 C 0.015 3.985 13 N -0.329 5.329 14 C -0.472 4.472 15 H 0.086 0.914 16 C -0.222 4.222 17 N -0.546 5.546 18 Si 0.890 3.110 19 H -0.218 1.218 20 H -0.223 1.223 21 H -0.216 1.216 22 C 0.016 3.984 23 C -0.130 4.130 24 H 0.093 0.907 25 C -0.194 4.194 26 H 0.121 0.879 27 H 0.111 0.889 28 H 0.124 0.876 29 H 0.107 0.893 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.109 0.891 35 H 0.111 0.889 36 H 0.108 0.892 37 H 0.229 0.771 38 H 0.075 0.925 39 H 0.041 0.959 40 H 0.078 0.922 41 H 0.042 0.958 42 H 0.048 0.952 43 H 0.070 0.930 44 H 0.073 0.927 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -15.004 -6.229 3.762 16.676 hybrid contribution -0.400 -0.611 2.048 2.175 sum -15.404 -6.840 5.810 17.828 Atomic orbital electron populations 1.23986 0.96176 1.01909 1.01743 1.22996 0.95919 0.97755 0.99219 1.19366 0.94890 0.93017 0.94689 1.22180 0.98471 0.99958 1.00575 1.22070 0.99138 1.04117 0.95467 1.21702 0.99191 0.96110 0.99825 1.20555 0.79336 0.88432 0.81789 1.90598 1.64554 1.50451 1.34780 1.45977 1.44603 1.21216 1.25070 1.22352 0.93768 0.85296 0.96038 0.88896 1.21761 0.87186 0.92246 0.97259 1.44479 1.32758 1.45947 1.09678 1.19702 1.11247 1.08676 1.07604 0.91433 1.25654 0.99170 0.97756 0.99664 1.70734 1.43929 1.02541 1.37436 0.83643 0.75937 0.74898 0.76568 1.21766 1.22289 1.21563 1.21351 0.92630 0.96285 0.88166 1.22421 0.96364 0.99337 0.94877 0.90747 1.21727 0.97867 1.00162 0.99662 0.87851 0.88905 0.87571 0.89335 0.92933 0.93455 0.93315 0.93150 0.89058 0.88949 0.89221 0.77138 0.92533 0.95937 0.92170 0.95828 0.95247 0.93001 0.92696 0.92404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.83 13.70 29.01 0.40 -1.44 16 2 C -0.14 -1.41 8.76 -36.02 -0.32 -1.72 16 3 C -0.02 -0.23 0.74 -155.66 -0.11 -0.34 16 4 C -0.16 -1.88 6.83 37.16 0.25 -1.63 16 5 C -0.15 -2.06 8.16 37.16 0.30 -1.76 16 6 C -0.13 -1.44 4.75 -27.88 -0.13 -1.57 16 7 C 0.51 7.74 7.24 -10.99 -0.08 7.66 16 8 O -0.53 -9.89 11.09 5.55 0.06 -9.83 16 9 N -0.72 -10.49 5.23 -51.73 -0.27 -10.76 16 10 C 0.13 2.39 2.76 -65.78 -0.18 2.21 16 11 H 0.09 1.86 7.63 -51.93 -0.40 1.47 16 12 C 0.14 3.41 5.02 -2.53 -0.01 3.40 16 13 N -0.60 -15.56 3.33 -170.07 -0.57 -16.12 16 14 C -0.35 -10.00 9.97 -15.06 -0.15 -10.15 16 15 H 0.07 1.95 8.02 -52.49 -0.42 1.53 16 16 C -0.02 -0.59 4.96 -17.43 -0.09 -0.67 16 17 N -0.91 -27.99 12.86 55.49 0.71 -27.28 16 18 Si 1.06 26.23 30.03 -169.99 -5.10 21.13 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.30 -7.18 7.11 56.52 0.40 -6.78 16 21 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 22 C 0.14 2.94 6.85 -3.06 -0.02 2.92 16 23 C -0.11 -1.79 3.15 -88.78 -0.28 -2.07 16 24 H 0.07 1.11 8.00 -51.93 -0.42 0.69 16 25 C -0.14 -1.78 9.17 37.16 0.34 -1.44 16 26 H 0.10 0.94 5.69 -52.49 -0.30 0.64 16 27 H 0.09 0.71 8.06 -52.48 -0.42 0.29 16 28 H 0.11 0.96 8.06 -52.49 -0.42 0.53 16 29 H 0.09 1.31 5.51 -51.93 -0.29 1.03 16 30 H 0.05 0.60 7.50 -51.93 -0.39 0.21 16 31 H 0.05 0.51 7.50 -51.93 -0.39 0.12 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.09 1.54 5.51 -51.93 -0.29 1.25 16 35 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.40 4.53 8.52 -40.82 -0.35 4.18 16 38 H 0.06 1.58 7.81 -51.93 -0.41 1.17 16 39 H 0.02 0.57 7.02 -51.93 -0.36 0.21 16 40 H 0.27 8.29 6.43 -40.82 -0.26 8.03 16 41 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.03 0.61 7.78 -51.93 -0.40 0.20 16 43 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 44 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 45 H 0.06 0.79 8.08 -51.93 -0.42 0.37 16 LS Contribution 350.04 15.07 5.28 5.28 Total: -1.00 -32.83 350.04 -7.66 -40.49 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -7.69 Total: 3.72 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: -0.08 Total: -6.61 kcal Atomic # 7 Polarization: -54.04 SS G_CDS: -0.12 Total: -54.17 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: 0.06 Total: -9.83 kcal Atomic # 14 Polarization: 26.23 SS G_CDS: -5.10 Total: 21.13 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.83 -7.66 -40.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207158290.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.266 kcal (2) G-P(sol) polarization free energy of solvation -32.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds