Wall clock time and date at job start Tue Mar 31 2020 02:36:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09006 * 110.64354 * 2 1 4 4 C 1.54336 * 110.85088 * 236.83204 * 2 1 3 5 5 N 1.47029 * 107.26361 * 219.67259 * 4 2 1 6 6 C 1.36940 * 125.64310 * 178.85067 * 5 4 2 7 7 H 1.07993 * 120.00123 * 344.02478 * 6 5 4 8 8 C 1.38812 * 119.99383 * 164.03306 * 6 5 4 9 9 N 1.31611 * 120.00597 * 350.53212 * 8 6 5 10 10 Si 1.86807 * 119.99635 * 170.25783 * 8 6 5 11 11 H 1.48502 * 109.46980 * 84.94616 * 10 8 6 12 12 H 1.48493 * 109.46954 * 204.94631 * 10 8 6 13 13 H 1.48497 * 109.47177 * 324.95034 * 10 8 6 14 14 C 1.47419 * 108.70434 * 358.58479 * 5 4 2 15 15 C 1.54915 * 104.83366 * 24.35516 * 14 5 4 16 16 H 1.08999 * 111.00301 * 81.06336 * 15 14 5 17 17 N 1.46493 * 111.00385 * 204.87708 * 15 14 5 18 18 C 1.34783 * 120.00241 * 273.54796 * 17 15 14 19 19 O 1.21279 * 119.99662 * 359.97438 * 18 17 15 20 20 C 1.50699 * 119.99976 * 180.02562 * 18 17 15 21 21 C 1.53004 * 109.47054 * 179.97438 * 20 18 17 22 22 C 1.53000 * 109.47084 * 179.97438 * 21 20 18 23 23 C 1.52999 * 109.46679 * 180.02562 * 22 21 20 24 24 C 1.52998 * 117.49845 * 243.74662 * 23 22 21 25 25 C 1.53002 * 117.49684 * 175.08908 * 23 22 21 26 26 H 1.09003 * 109.47219 * 296.85999 * 1 2 3 27 27 H 1.09003 * 109.47282 * 56.85840 * 1 2 3 28 28 H 1.09000 * 109.47097 * 176.86308 * 1 2 3 29 29 H 1.08996 * 109.98992 * 100.19544 * 4 2 1 30 30 H 1.09000 * 109.77791 * 339.02460 * 4 2 1 31 31 H 0.96998 * 120.00687 * 179.72516 * 9 8 6 32 32 H 1.08999 * 110.36646 * 143.19401 * 14 5 4 33 33 H 1.09000 * 110.36876 * 265.41061 * 14 5 4 34 34 H 0.96998 * 120.00208 * 93.54704 * 17 15 14 35 35 H 1.09001 * 109.47191 * 299.99887 * 20 18 17 36 36 H 1.08999 * 109.47303 * 59.99872 * 20 18 17 37 37 H 1.09002 * 109.46930 * 300.00474 * 21 20 18 38 38 H 1.09009 * 109.46798 * 59.99992 * 21 20 18 39 39 H 1.09004 * 109.47071 * 299.99989 * 22 21 20 40 40 H 1.08999 * 109.47128 * 60.00404 * 22 21 20 41 41 H 1.09002 * 115.55423 * 29.42156 * 23 22 21 42 42 H 1.09007 * 117.50011 * 0.02562 * 24 23 22 43 43 H 1.09000 * 117.50388 * 145.02223 * 24 23 22 44 44 H 1.08994 * 117.49963 * 214.98145 * 25 23 22 45 45 H 1.08998 * 117.49522 * 359.97316 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0793 -0.7891 -1.2073 5 7 3.2445 -1.5520 -0.7362 6 6 4.0043 -2.3995 -1.4976 7 1 3.6306 -2.7545 -2.4466 8 6 5.2548 -2.8024 -1.0494 9 7 5.7902 -2.2313 0.0085 10 14 6.1743 -4.1607 -1.9433 11 1 6.9265 -3.5809 -3.0850 12 1 7.1228 -4.8155 -1.0070 13 1 5.2045 -5.1654 -2.4487 14 6 3.4633 -1.2486 0.6897 15 6 2.0789 -0.7933 1.2152 16 1 1.4451 -1.6510 1.4404 17 7 2.2214 0.0730 2.3879 18 6 2.3155 -0.4686 3.6185 19 8 2.2818 -1.6732 3.7550 20 6 2.4615 0.4226 4.8249 21 6 2.5460 -0.4377 6.0873 22 6 2.6948 0.4672 7.3121 23 6 2.7799 -0.3932 8.5744 24 6 1.6583 -0.2484 9.6049 25 6 3.0477 0.3221 9.9001 26 1 -0.3634 0.4643 0.9168 27 1 -0.3634 0.5618 -0.8605 28 1 -0.3633 -1.0261 -0.0562 29 1 2.3813 -0.1004 -1.9963 30 1 1.3155 -1.4715 -1.5803 31 1 6.6622 -2.5155 0.3241 32 1 3.7960 -2.1405 1.2206 33 1 4.1945 -0.4477 0.7993 34 1 2.2480 1.0365 2.2788 35 1 3.3696 1.0180 4.7291 36 1 1.5985 1.0849 4.8940 37 1 1.6377 -1.0327 6.1829 38 1 3.4088 -1.1002 6.0184 39 1 3.6033 1.0619 7.2162 40 1 1.8322 1.1300 7.3812 41 1 3.2151 -1.3835 8.4400 42 1 0.8596 0.4595 9.3834 43 1 1.3558 -1.1433 10.1487 44 1 3.6588 -0.1977 10.6379 45 1 3.1638 1.4055 9.8728 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001208367005.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:36:37 Heat of formation + Delta-G solvation = -12.335425 kcal Electronic energy + Delta-G solvation = -21952.147505 eV Core-core repulsion = 18777.089964 eV Total energy + Delta-G solvation = -3175.057541 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.54432 -37.97415 -37.41979 -33.88149 -33.69697 -32.55998 -30.38899 -28.73574 -27.09923 -25.63292 -23.70608 -22.63537 -22.25818 -20.59884 -20.42142 -20.02682 -19.29466 -16.86809 -16.65703 -15.90523 -15.79170 -15.38997 -14.81557 -14.56806 -13.99932 -13.82027 -13.67178 -13.06645 -12.87585 -12.58439 -12.44123 -12.36332 -12.03118 -11.74760 -11.73071 -11.61238 -11.34800 -11.14848 -10.93221 -10.84286 -10.76256 -10.58132 -10.40233 -10.36810 -10.02510 -9.96291 -9.85841 -9.72310 -9.37469 -8.57478 -8.39926 -6.73089 -5.71476 -3.07414 3.06356 3.42423 3.48110 3.50400 3.53927 3.63499 4.45226 4.53496 4.71663 4.73632 4.91359 5.06447 5.08710 5.18495 5.26915 5.31471 5.41337 5.44272 5.52201 5.56167 5.63884 5.64450 5.70883 5.77222 5.83496 5.89169 5.96147 6.05679 6.07577 6.16414 6.21911 6.25264 6.38161 6.39111 6.49605 6.70960 6.85589 7.00316 7.45543 7.64862 7.82142 7.96857 8.29945 8.68021 9.21325 9.83957 10.52193 11.41270 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.018140 B = 0.003521 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.168600 B = 7951.061008 C = 9192.148031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.110 4.110 3 H 0.074 0.926 4 C 0.140 3.860 5 N -0.601 5.601 6 C -0.235 4.235 7 H 0.075 0.925 8 C -0.003 4.003 9 N -0.912 5.912 10 Si 0.910 3.090 11 H -0.287 1.287 12 H -0.290 1.290 13 H -0.281 1.281 14 C 0.172 3.828 15 C 0.119 3.881 16 H 0.088 0.912 17 N -0.717 5.717 18 C 0.509 3.491 19 O -0.538 6.538 20 C -0.140 4.140 21 C -0.101 4.101 22 C -0.089 4.089 23 C -0.150 4.150 24 C -0.183 4.183 25 C -0.185 4.185 26 H 0.050 0.950 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.024 0.976 30 H 0.026 0.974 31 H 0.253 0.747 32 H 0.063 0.937 33 H 0.032 0.968 34 H 0.394 0.606 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.066 0.934 40 H 0.062 0.938 41 H 0.106 0.894 42 H 0.093 0.907 43 H 0.091 0.909 44 H 0.091 0.909 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.245 9.872 13.803 19.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.129 4.129 3 H 0.092 0.908 4 C 0.014 3.986 5 N -0.327 5.327 6 C -0.363 4.363 7 H 0.093 0.907 8 C -0.201 4.201 9 N -0.558 5.558 10 Si 0.740 3.260 11 H -0.214 1.214 12 H -0.216 1.216 13 H -0.206 1.206 14 C 0.046 3.954 15 C 0.014 3.986 16 H 0.106 0.894 17 N -0.367 5.367 18 C 0.295 3.705 19 O -0.415 6.415 20 C -0.180 4.180 21 C -0.139 4.139 22 C -0.126 4.126 23 C -0.168 4.168 24 C -0.220 4.220 25 C -0.222 4.222 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.042 0.958 30 H 0.044 0.956 31 H 0.063 0.937 32 H 0.081 0.919 33 H 0.050 0.950 34 H 0.227 0.773 35 H 0.109 0.891 36 H 0.106 0.894 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.085 0.915 40 H 0.080 0.920 41 H 0.124 0.876 42 H 0.111 0.889 43 H 0.109 0.891 44 H 0.110 0.890 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -9.065 8.880 13.907 18.826 hybrid contribution 0.666 -0.122 -0.530 0.860 sum -8.399 8.758 13.377 18.061 Atomic orbital electron populations 1.21740 0.94988 1.01857 1.00869 1.22395 0.95140 0.99226 0.96163 0.90771 1.21366 0.90527 0.93031 0.93665 1.44344 1.31659 1.50385 1.06318 1.18947 0.96000 1.19269 1.02133 0.90742 1.24918 0.96385 1.00213 0.98552 1.69946 1.17157 1.42764 1.25935 0.86180 0.79502 0.81720 0.78565 1.21450 1.21562 1.20629 1.21593 0.89801 0.99616 0.84420 1.22586 1.00614 0.92547 0.82880 0.89440 1.45927 1.74536 1.09888 1.06362 1.20608 0.76231 0.89265 0.84425 1.90715 1.49368 1.15272 1.86132 1.21674 1.03854 0.98949 0.93515 1.21308 1.03754 0.97523 0.91318 1.21211 1.01771 0.97180 0.92478 1.22374 1.03183 1.00955 0.90291 1.23037 0.92097 1.03111 1.03714 1.22970 0.99428 1.00273 0.99504 0.93130 0.92840 0.92517 0.95801 0.95561 0.93669 0.91910 0.94995 0.77261 0.89060 0.89434 0.91170 0.90937 0.91518 0.91952 0.87628 0.88900 0.89055 0.89022 0.88928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 9.16 37.15 0.34 -1.52 16 2 C -0.11 -1.85 3.16 -88.78 -0.28 -2.13 16 3 H 0.07 1.15 8.00 -51.93 -0.42 0.73 16 4 C 0.14 2.94 6.85 -3.05 -0.02 2.92 16 5 N -0.60 -15.81 3.39 -170.06 -0.58 -16.39 16 6 C -0.23 -6.75 10.21 -15.06 -0.15 -6.91 16 7 H 0.07 2.06 7.85 -52.49 -0.41 1.65 16 8 C 0.00 -0.09 5.38 -17.43 -0.09 -0.18 16 9 N -0.91 -27.72 10.92 55.49 0.61 -27.11 16 10 Si 0.91 22.65 29.57 -169.99 -5.03 17.62 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 13 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 14 C 0.17 4.32 5.06 -2.53 -0.01 4.31 16 15 C 0.12 2.31 2.77 -65.78 -0.18 2.13 16 16 H 0.09 1.87 7.63 -51.93 -0.40 1.47 16 17 N -0.72 -11.25 5.23 -51.73 -0.27 -11.52 16 18 C 0.51 8.34 7.83 -10.98 -0.09 8.25 16 19 O -0.54 -11.39 15.73 5.56 0.09 -11.31 16 20 C -0.14 -1.57 5.70 -27.88 -0.16 -1.73 16 21 C -0.10 -1.17 4.46 -26.73 -0.12 -1.29 16 22 C -0.09 -0.81 5.50 -26.73 -0.15 -0.96 16 23 C -0.15 -1.38 5.73 -90.62 -0.52 -1.90 16 24 C -0.18 -1.50 10.18 -26.70 -0.27 -1.77 16 25 C -0.18 -1.48 10.25 -26.69 -0.27 -1.75 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.81 8.07 -51.93 -0.42 0.39 16 29 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.03 0.54 7.77 -51.93 -0.40 0.14 16 31 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 32 H 0.06 1.85 7.33 -51.93 -0.38 1.47 16 33 H 0.03 0.87 7.94 -51.93 -0.41 0.45 16 34 H 0.39 4.82 8.52 -40.82 -0.35 4.48 16 35 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.07 0.88 8.10 -51.93 -0.42 0.46 16 38 H 0.07 0.98 8.10 -51.92 -0.42 0.56 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.51 7.88 -51.93 -0.41 0.10 16 41 H 0.11 1.04 8.08 -51.93 -0.42 0.62 16 42 H 0.09 0.71 8.03 -51.93 -0.42 0.29 16 43 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 45 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 363.27 15.07 5.47 5.47 Total: -1.00 -33.61 363.27 -9.90 -43.51 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -8.21 Total: 2.25 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: -1.98 Total: -2.52 kcal Atomic # 7 Polarization: -54.78 SS G_CDS: -0.24 Total: -55.03 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: 0.09 Total: -11.31 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.03 Total: 17.62 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.61 -9.90 -43.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208367005.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.176 kcal (2) G-P(sol) polarization free energy of solvation -33.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds