Wall clock time and date at job start Tue Mar 31 2020 02:36:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09006 * 110.64354 * 2 1 4 4 C 1.54336 * 110.85088 * 236.83204 * 2 1 3 5 5 N 1.47029 * 107.26361 * 219.67259 * 4 2 1 6 6 C 1.36940 * 125.64310 * 178.85067 * 5 4 2 7 7 H 1.07993 * 120.00123 * 344.02478 * 6 5 4 8 8 C 1.38812 * 119.99383 * 164.03306 * 6 5 4 9 9 N 1.31611 * 120.00597 * 350.53212 * 8 6 5 10 10 Si 1.86807 * 119.99635 * 170.25783 * 8 6 5 11 11 H 1.48502 * 109.46980 * 84.94616 * 10 8 6 12 12 H 1.48493 * 109.46954 * 204.94631 * 10 8 6 13 13 H 1.48497 * 109.47177 * 324.95034 * 10 8 6 14 14 C 1.47419 * 108.70434 * 358.58479 * 5 4 2 15 15 C 1.54915 * 104.83366 * 24.35516 * 14 5 4 16 16 H 1.08999 * 111.00301 * 81.06336 * 15 14 5 17 17 N 1.46493 * 111.00385 * 204.87708 * 15 14 5 18 18 C 1.34783 * 120.00241 * 273.54796 * 17 15 14 19 19 O 1.21279 * 119.99662 * 359.97438 * 18 17 15 20 20 C 1.50699 * 119.99976 * 180.02562 * 18 17 15 21 21 C 1.53004 * 109.47054 * 179.97438 * 20 18 17 22 22 C 1.53000 * 109.47084 * 179.97438 * 21 20 18 23 23 C 1.52999 * 109.46679 * 180.02562 * 22 21 20 24 24 C 1.52998 * 117.49845 * 243.74662 * 23 22 21 25 25 C 1.53002 * 117.49684 * 175.08908 * 23 22 21 26 26 H 1.09003 * 109.47219 * 296.85999 * 1 2 3 27 27 H 1.09003 * 109.47282 * 56.85840 * 1 2 3 28 28 H 1.09000 * 109.47097 * 176.86308 * 1 2 3 29 29 H 1.08996 * 109.98992 * 100.19544 * 4 2 1 30 30 H 1.09000 * 109.77791 * 339.02460 * 4 2 1 31 31 H 0.96998 * 120.00687 * 179.72516 * 9 8 6 32 32 H 1.08999 * 110.36646 * 143.19401 * 14 5 4 33 33 H 1.09000 * 110.36876 * 265.41061 * 14 5 4 34 34 H 0.96998 * 120.00208 * 93.54704 * 17 15 14 35 35 H 1.09001 * 109.47191 * 299.99887 * 20 18 17 36 36 H 1.08999 * 109.47303 * 59.99872 * 20 18 17 37 37 H 1.09002 * 109.46930 * 300.00474 * 21 20 18 38 38 H 1.09009 * 109.46798 * 59.99992 * 21 20 18 39 39 H 1.09004 * 109.47071 * 299.99989 * 22 21 20 40 40 H 1.08999 * 109.47128 * 60.00404 * 22 21 20 41 41 H 1.09002 * 115.55423 * 29.42156 * 23 22 21 42 42 H 1.09007 * 117.50011 * 0.02562 * 24 23 22 43 43 H 1.09000 * 117.50388 * 145.02223 * 24 23 22 44 44 H 1.08994 * 117.49963 * 214.98145 * 25 23 22 45 45 H 1.08998 * 117.49522 * 359.97316 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0793 -0.7891 -1.2073 5 7 3.2445 -1.5520 -0.7362 6 6 4.0043 -2.3995 -1.4976 7 1 3.6306 -2.7545 -2.4466 8 6 5.2548 -2.8024 -1.0494 9 7 5.7902 -2.2313 0.0085 10 14 6.1743 -4.1607 -1.9433 11 1 6.9265 -3.5809 -3.0850 12 1 7.1228 -4.8155 -1.0070 13 1 5.2045 -5.1654 -2.4487 14 6 3.4633 -1.2486 0.6897 15 6 2.0789 -0.7933 1.2152 16 1 1.4451 -1.6510 1.4404 17 7 2.2214 0.0730 2.3879 18 6 2.3155 -0.4686 3.6185 19 8 2.2818 -1.6732 3.7550 20 6 2.4615 0.4226 4.8249 21 6 2.5460 -0.4377 6.0873 22 6 2.6948 0.4672 7.3121 23 6 2.7799 -0.3932 8.5744 24 6 1.6583 -0.2484 9.6049 25 6 3.0477 0.3221 9.9001 26 1 -0.3634 0.4643 0.9168 27 1 -0.3634 0.5618 -0.8605 28 1 -0.3633 -1.0261 -0.0562 29 1 2.3813 -0.1004 -1.9963 30 1 1.3155 -1.4715 -1.5803 31 1 6.6622 -2.5155 0.3241 32 1 3.7960 -2.1405 1.2206 33 1 4.1945 -0.4477 0.7993 34 1 2.2480 1.0365 2.2788 35 1 3.3696 1.0180 4.7291 36 1 1.5985 1.0849 4.8940 37 1 1.6377 -1.0327 6.1829 38 1 3.4088 -1.1002 6.0184 39 1 3.6033 1.0619 7.2162 40 1 1.8322 1.1300 7.3812 41 1 3.2151 -1.3835 8.4400 42 1 0.8596 0.4595 9.3834 43 1 1.3558 -1.1433 10.1487 44 1 3.6588 -0.1977 10.6379 45 1 3.1638 1.4055 9.8728 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001208367005.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:36:36 Heat of formation + Delta-G solvation = -33.775128 kcal Electronic energy + Delta-G solvation = -21953.077200 eV Core-core repulsion = 18777.089964 eV Total energy + Delta-G solvation = -3175.987236 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.96738 -39.25311 -38.48329 -35.62377 -34.69189 -34.21943 -32.22542 -30.07719 -28.49584 -27.36823 -25.34690 -23.55245 -23.15377 -22.08089 -21.56204 -21.32567 -20.67650 -18.89503 -17.93493 -17.37160 -16.95514 -16.68164 -16.25615 -15.75777 -15.52990 -15.11489 -14.90229 -14.47415 -14.44945 -14.23511 -13.94236 -13.31701 -13.28314 -13.10829 -12.95446 -12.82457 -12.65876 -12.61522 -12.33646 -12.25274 -12.01993 -11.92922 -11.89629 -11.73690 -11.70178 -11.44916 -11.10321 -10.77908 -10.72713 -10.67330 -9.95655 -8.86736 -7.92674 -5.31256 1.41273 1.45137 1.53469 1.74808 2.25290 2.47763 2.95641 3.27580 3.61829 3.66363 3.76580 3.90361 4.02154 4.06545 4.08823 4.09540 4.22678 4.31570 4.44753 4.53135 4.60633 4.64656 4.76315 4.81951 4.82474 4.89657 4.91043 4.97063 5.04907 5.08918 5.12384 5.22912 5.27946 5.29707 5.35655 5.37542 5.38760 5.48809 5.52073 5.56113 5.74778 6.16231 6.68991 7.01670 7.40843 7.71330 8.38335 9.18687 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.018140 B = 0.003521 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.168600 B = 7951.061008 C = 9192.148031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.091 4.091 3 H 0.098 0.902 4 C 0.131 3.869 5 N -0.625 5.625 6 C -0.251 4.251 7 H 0.081 0.919 8 C -0.064 4.064 9 N -0.946 5.946 10 Si 0.979 3.021 11 H -0.276 1.276 12 H -0.295 1.295 13 H -0.270 1.270 14 C 0.184 3.816 15 C 0.136 3.864 16 H 0.065 0.935 17 N -0.704 5.704 18 C 0.500 3.500 19 O -0.595 6.595 20 C -0.127 4.127 21 C -0.098 4.098 22 C -0.078 4.078 23 C -0.170 4.170 24 C -0.182 4.182 25 C -0.177 4.177 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.045 0.955 29 H 0.030 0.970 30 H 0.033 0.967 31 H 0.247 0.753 32 H 0.004 0.996 33 H 0.006 0.994 34 H 0.416 0.584 35 H 0.113 0.887 36 H 0.129 0.871 37 H 0.054 0.946 38 H 0.041 0.959 39 H 0.075 0.925 40 H 0.081 0.919 41 H 0.088 0.912 42 H 0.103 0.897 43 H 0.091 0.909 44 H 0.094 0.906 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.897 12.298 13.956 21.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.110 4.110 3 H 0.116 0.884 4 C 0.006 3.994 5 N -0.352 5.352 6 C -0.380 4.380 7 H 0.099 0.901 8 C -0.258 4.258 9 N -0.593 5.593 10 Si 0.806 3.194 11 H -0.202 1.202 12 H -0.222 1.222 13 H -0.195 1.195 14 C 0.058 3.942 15 C 0.030 3.970 16 H 0.084 0.916 17 N -0.356 5.356 18 C 0.289 3.711 19 O -0.475 6.475 20 C -0.166 4.166 21 C -0.137 4.137 22 C -0.116 4.116 23 C -0.189 4.189 24 C -0.219 4.219 25 C -0.214 4.214 26 H 0.091 0.909 27 H 0.097 0.903 28 H 0.064 0.936 29 H 0.048 0.952 30 H 0.051 0.949 31 H 0.056 0.944 32 H 0.023 0.977 33 H 0.024 0.976 34 H 0.253 0.747 35 H 0.131 0.869 36 H 0.147 0.853 37 H 0.073 0.927 38 H 0.060 0.940 39 H 0.093 0.907 40 H 0.100 0.900 41 H 0.107 0.893 42 H 0.121 0.879 43 H 0.110 0.890 44 H 0.113 0.887 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -10.754 11.366 14.042 21.024 hybrid contribution 1.167 -0.906 -0.586 1.590 sum -9.587 10.460 13.456 19.554 Atomic orbital electron populations 1.21693 0.91696 1.02000 1.03215 1.22344 0.97590 0.98995 0.92089 0.88417 1.21637 0.88804 0.93230 0.95708 1.44664 1.32663 1.51005 1.06867 1.19386 0.96419 1.19694 1.02468 0.90135 1.25821 0.97591 1.02775 0.99635 1.70158 1.17169 1.44305 1.27664 0.85110 0.78067 0.78847 0.77373 1.20243 1.22177 1.19519 1.21285 0.92618 0.96183 0.84150 1.22068 0.96442 0.93314 0.85220 0.91638 1.45768 1.73964 1.10639 1.05199 1.21662 0.74490 0.89211 0.85730 1.90699 1.51735 1.18135 1.86948 1.21717 1.06607 0.98191 0.90118 1.21250 1.01652 0.97684 0.93071 1.21128 1.03007 0.96657 0.90763 1.22376 1.04601 1.00693 0.91209 1.23125 0.92372 1.03433 1.02930 1.23049 0.99194 1.00864 0.98331 0.90879 0.90346 0.93572 0.95230 0.94922 0.94419 0.97746 0.97597 0.74672 0.86923 0.85346 0.92710 0.94006 0.90674 0.89997 0.89334 0.87857 0.89009 0.88728 0.87744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.02 9.16 71.98 0.66 -2.36 16 2 C -0.09 -2.86 3.16 -9.60 -0.03 -2.89 16 3 H 0.10 2.66 8.00 -2.38 -0.02 2.64 16 4 C 0.13 5.40 6.85 86.73 0.59 5.99 16 5 N -0.63 -33.79 3.39 -691.96 -2.35 -36.14 16 6 C -0.25 -14.75 10.21 84.03 0.86 -13.89 16 7 H 0.08 4.50 7.85 -2.91 -0.02 4.48 16 8 C -0.06 -3.85 5.38 84.86 0.46 -3.39 16 9 N -0.95 -60.14 10.92 21.65 0.24 -59.91 16 10 Si 0.98 47.74 29.57 68.60 2.03 49.77 16 11 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 12 H -0.30 -14.55 7.11 99.48 0.71 -13.85 16 13 H -0.27 -12.58 7.11 99.48 0.71 -11.88 16 14 C 0.18 9.71 5.06 86.86 0.44 10.15 16 15 C 0.14 5.31 2.77 46.39 0.13 5.44 16 16 H 0.07 2.87 7.63 -2.39 -0.02 2.85 16 17 N -0.70 -21.32 5.23 -435.96 -2.28 -23.60 16 18 C 0.50 16.30 7.83 87.66 0.69 16.98 16 19 O -0.59 -26.39 15.73 -3.03 -0.05 -26.43 16 20 C -0.13 -2.58 5.70 29.85 0.17 -2.41 16 21 C -0.10 -2.24 4.46 30.60 0.14 -2.11 16 22 C -0.08 -1.27 5.50 30.59 0.17 -1.11 16 23 C -0.17 -3.01 5.73 -10.79 -0.06 -3.07 16 24 C -0.18 -2.71 10.18 30.62 0.31 -2.40 16 25 C -0.18 -2.54 10.25 30.62 0.31 -2.22 16 26 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.05 1.20 8.07 -2.39 -0.02 1.18 16 29 H 0.03 1.19 8.14 -2.39 -0.02 1.18 16 30 H 0.03 1.31 7.77 -2.39 -0.02 1.29 16 31 H 0.25 15.28 8.31 -92.71 -0.77 14.51 16 32 H 0.00 0.25 7.33 -2.39 -0.02 0.24 16 33 H 0.01 0.34 7.94 -2.39 -0.02 0.33 16 34 H 0.42 8.94 8.52 -92.71 -0.79 8.16 16 35 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.13 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.05 1.40 8.10 -2.39 -0.02 1.38 16 38 H 0.04 1.19 8.10 -2.38 -0.02 1.17 16 39 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 40 H 0.08 1.04 7.88 -2.39 -0.02 1.02 16 41 H 0.09 1.83 8.08 -2.39 -0.02 1.81 16 42 H 0.10 1.32 8.03 -2.38 -0.02 1.30 16 43 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 44 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 45 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -79.24 363.27 2.58 -76.66 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: 0.16 Total: 16.93 kcal Atomic # 6 Polarization: -2.12 SS G_CDS: 4.83 Total: 2.71 kcal Atomic # 7 Polarization: -115.25 SS G_CDS: -4.39 Total: -119.64 kcal Atomic # 8 Polarization: -26.39 SS G_CDS: -0.05 Total: -26.43 kcal Atomic # 14 Polarization: 47.74 SS G_CDS: 2.03 Total: 49.77 kcal Total: -79.24 2.58 -76.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208367005.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.889 kcal (2) G-P(sol) polarization free energy of solvation -79.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds