Wall clock time and date at job start Tue Mar 31 2020 02:34:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 110.63940 * 2 1 4 4 C 1.54336 * 110.99640 * 236.92075 * 2 1 3 5 5 N 1.47022 * 107.26224 * 219.60056 * 4 2 1 6 6 C 1.34780 * 125.64571 * 178.85385 * 5 4 2 7 7 O 1.21279 * 120.00121 * 359.71499 * 6 5 4 8 8 C 1.50699 * 119.99952 * 179.71984 * 6 5 4 9 9 C 1.53003 * 109.47357 * 179.97438 * 8 6 5 10 10 C 1.52999 * 109.47187 * 179.97438 * 9 8 6 11 11 C 1.52996 * 109.47023 * 180.02562 * 10 9 8 12 12 C 1.53000 * 117.49997 * 185.00174 * 11 10 9 13 13 C 1.53002 * 60.02940 * 252.49592 * 12 11 10 14 14 C 1.47418 * 108.70413 * 358.58924 * 5 4 2 15 15 C 1.54907 * 104.83470 * 24.35413 * 14 5 4 16 16 H 1.09005 * 111.00459 * 81.10108 * 15 14 5 17 17 N 1.46492 * 111.00619 * 204.91505 * 15 14 5 18 18 C 1.36941 * 120.00414 * 273.54413 * 17 15 14 19 19 H 1.08002 * 119.99804 * 0.02562 * 18 17 15 20 20 C 1.38810 * 120.00140 * 180.02562 * 18 17 15 21 21 N 1.31618 * 120.00153 * 359.97438 * 20 18 17 22 22 Si 1.86809 * 119.99720 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.46982 * 59.99954 * 22 20 18 24 24 H 1.48499 * 109.46805 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.46890 * 299.99953 * 22 20 18 26 26 H 1.09000 * 109.46899 * 296.85703 * 1 2 3 27 27 H 1.09004 * 109.47071 * 56.85530 * 1 2 3 28 28 H 1.08998 * 109.47290 * 176.85753 * 1 2 3 29 29 H 1.09001 * 109.98825 * 100.13263 * 4 2 1 30 30 H 1.08998 * 109.78524 * 338.95730 * 4 2 1 31 31 H 1.09005 * 109.47493 * 59.99612 * 8 6 5 32 32 H 1.09001 * 109.46952 * 299.99818 * 8 6 5 33 33 H 1.08998 * 109.46793 * 59.99852 * 9 8 6 34 34 H 1.08996 * 109.46794 * 300.00284 * 9 8 6 35 35 H 1.08994 * 109.46971 * 59.99889 * 10 9 8 36 36 H 1.09001 * 109.47173 * 300.00014 * 10 9 8 37 37 H 1.09007 * 115.55004 * 330.66846 * 11 10 9 38 38 H 1.09002 * 117.49833 * 359.97438 * 12 11 10 39 39 H 1.09002 * 117.49953 * 144.99738 * 12 11 10 40 40 H 1.09000 * 117.49996 * 107.50493 * 13 12 11 41 41 H 1.08999 * 117.49664 * 252.51862 * 13 12 11 42 42 H 1.09006 * 110.36947 * 143.19432 * 14 5 4 43 43 H 1.09000 * 110.36804 * 265.51359 * 14 5 4 44 44 H 0.96998 * 119.99887 * 93.55051 * 17 15 14 45 45 H 0.97005 * 119.99815 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0830 -0.7864 -1.2073 5 7 3.2493 -1.5471 -0.7354 6 6 4.0003 -2.3786 -1.4845 7 8 3.7295 -2.5527 -2.6538 8 6 5.1764 -3.0921 -0.8691 9 6 5.8523 -3.9674 -1.9265 10 6 7.0467 -4.6912 -1.3019 11 6 7.7229 -5.5660 -2.3595 12 6 8.8730 -6.4654 -1.9022 13 6 9.1637 -5.2223 -2.7456 14 6 3.4651 -1.2448 0.6912 15 6 2.0790 -0.7934 1.2151 16 1 1.4470 -1.6529 1.4390 17 7 2.2176 0.0726 2.3885 18 6 2.3129 -0.4781 3.6386 19 1 2.2863 -1.5510 3.7595 20 6 2.4437 0.3426 4.7505 21 7 2.4766 1.6501 4.6031 22 14 2.5744 -0.4088 6.4558 23 1 3.7678 -1.2903 6.5181 24 1 2.7042 0.6730 7.4647 25 1 1.3544 -1.2064 6.7400 26 1 -0.3633 0.4643 0.9168 27 1 -0.3633 0.5619 -0.8605 28 1 -0.3634 -1.0261 -0.0563 29 1 2.3848 -0.0961 -1.9951 30 1 1.3216 -1.4702 -1.5824 31 1 4.8317 -3.7181 -0.0461 32 1 5.8903 -2.3588 -0.4936 33 1 6.1970 -3.3417 -2.7498 34 1 5.1382 -4.7005 -2.3017 35 1 6.7024 -5.3167 -0.4785 36 1 7.7606 -3.9577 -0.9271 37 1 7.0683 -5.9458 -3.1440 38 1 9.1483 -6.4336 -0.8480 39 1 8.9751 -7.4369 -2.3859 40 1 9.6299 -4.3730 -2.2462 41 1 9.4566 -5.3760 -3.7842 42 1 3.7992 -2.1365 1.2217 43 1 4.1929 -0.4410 0.8028 44 1 2.2417 1.0362 2.2799 45 1 2.5684 2.2236 5.3801 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001215367806.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:34:52 Heat of formation + Delta-G solvation = -36.531116 kcal Electronic energy + Delta-G solvation = -21788.226614 eV Core-core repulsion = 18612.119869 eV Total energy + Delta-G solvation = -3176.106745 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.16555 -39.13690 -38.46156 -35.84779 -34.78051 -33.85917 -32.48940 -29.46239 -29.07728 -27.02339 -25.83962 -23.56581 -23.18074 -22.61532 -21.34263 -21.29863 -20.06063 -19.08209 -18.01777 -17.48748 -16.80606 -16.60599 -16.21201 -15.91409 -15.35096 -15.15062 -15.05296 -14.54406 -14.47941 -14.22614 -14.03897 -13.36172 -13.25326 -13.10985 -12.99603 -12.87719 -12.77815 -12.61143 -12.35332 -12.24120 -12.15662 -11.98625 -11.94594 -11.78350 -11.68425 -11.37760 -11.14785 -10.95908 -10.81252 -10.70339 -9.67447 -9.02583 -7.92398 -5.22163 1.52433 1.53665 1.59651 1.61129 2.00518 2.58890 2.93925 3.37228 3.39983 3.69552 3.79455 3.82790 3.95948 4.03374 4.07913 4.16747 4.18283 4.24041 4.38117 4.42275 4.48310 4.57562 4.64863 4.72054 4.74924 4.81049 4.88670 4.89038 4.90478 4.92652 5.08506 5.10841 5.13321 5.22893 5.25430 5.28182 5.34209 5.36044 5.45791 5.49741 5.57345 6.28194 6.53471 7.13377 7.36271 8.07496 8.31935 9.30219 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.014649 B = 0.003638 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.977640 B = 7695.676909 C = 9311.504319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.104 4.104 3 H 0.078 0.922 4 C 0.118 3.882 5 N -0.616 5.616 6 C 0.520 3.480 7 O -0.587 6.587 8 C -0.132 4.132 9 C -0.091 4.091 10 C -0.084 4.084 11 C -0.163 4.163 12 C -0.179 4.179 13 C -0.185 4.185 14 C 0.086 3.914 15 C 0.170 3.830 16 H 0.062 0.938 17 N -0.720 5.720 18 C -0.241 4.241 19 H 0.080 0.920 20 C -0.069 4.069 21 N -0.967 5.967 22 Si 0.968 3.032 23 H -0.276 1.276 24 H -0.300 1.300 25 H -0.280 1.280 26 H 0.048 0.952 27 H 0.072 0.928 28 H 0.060 0.940 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.107 0.893 32 H 0.104 0.896 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.100 0.900 38 H 0.098 0.902 39 H 0.099 0.901 40 H 0.095 0.905 41 H 0.096 0.904 42 H 0.080 0.920 43 H 0.061 0.939 44 H 0.376 0.624 45 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.236 -11.607 -12.139 18.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.123 4.123 3 H 0.096 0.904 4 C -0.005 4.005 5 N -0.349 5.349 6 C 0.311 3.689 7 O -0.468 6.468 8 C -0.172 4.172 9 C -0.129 4.129 10 C -0.121 4.121 11 C -0.181 4.181 12 C -0.216 4.216 13 C -0.222 4.222 14 C -0.040 4.040 15 C 0.060 3.940 16 H 0.080 0.920 17 N -0.359 5.359 18 C -0.373 4.373 19 H 0.098 0.902 20 C -0.261 4.261 21 N -0.617 5.617 22 Si 0.797 3.203 23 H -0.202 1.202 24 H -0.227 1.227 25 H -0.206 1.206 26 H 0.068 0.932 27 H 0.091 0.909 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.126 0.874 32 H 0.122 0.878 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.118 0.882 38 H 0.116 0.884 39 H 0.118 0.882 40 H 0.114 0.886 41 H 0.115 0.885 42 H 0.098 0.902 43 H 0.079 0.921 44 H 0.209 0.791 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 7.133 -11.864 -12.631 18.740 hybrid contribution 0.037 0.453 0.990 1.090 sum 7.170 -11.411 -11.641 17.808 Atomic orbital electron populations 1.21620 0.92689 1.02276 1.02065 1.22385 0.97445 0.99146 0.93347 0.90393 1.21965 0.87676 0.94450 0.96447 1.48639 1.30084 1.44087 1.12064 1.21023 0.83993 0.78305 0.85549 1.90642 1.72564 1.65626 1.18012 1.21716 0.94801 1.00161 1.00481 1.21216 0.96793 0.97967 0.96907 1.21150 0.96255 0.97787 0.96938 1.22362 0.91190 1.02839 1.01717 1.23041 1.02536 0.95249 1.00756 1.23124 0.98318 0.99781 1.01003 1.23183 1.00891 1.00857 0.79040 1.21502 0.92883 0.93403 0.86223 0.91983 1.42384 1.87158 1.05072 1.01335 1.19564 1.40839 0.92221 0.84682 0.90234 1.25490 1.03507 0.95729 1.01402 1.69798 1.58772 1.03244 1.29867 0.85298 0.78215 0.76799 0.79947 1.20193 1.22670 1.20587 0.93237 0.90918 0.92100 0.91669 0.91147 0.87448 0.87790 0.92534 0.92271 0.90776 0.91233 0.88181 0.88376 0.88226 0.88611 0.88542 0.90156 0.92085 0.79098 0.94052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.47 9.17 71.98 0.66 -2.81 16 2 C -0.10 -3.12 3.15 -9.60 -0.03 -3.15 16 3 H 0.08 2.46 8.00 -2.39 -0.02 2.44 16 4 C 0.12 3.39 6.48 86.73 0.56 3.95 16 5 N -0.62 -18.63 3.33 -811.78 -2.70 -21.33 16 6 C 0.52 15.81 7.85 87.66 0.69 16.49 16 7 O -0.59 -21.46 16.31 -3.03 -0.05 -21.51 16 8 C -0.13 -2.99 4.71 29.85 0.14 -2.85 16 9 C -0.09 -1.93 4.46 30.59 0.14 -1.80 16 10 C -0.08 -1.42 5.50 30.59 0.17 -1.26 16 11 C -0.16 -2.69 5.74 -10.77 -0.06 -2.75 16 12 C -0.18 -2.53 10.25 30.60 0.31 -2.22 16 13 C -0.19 -2.77 10.18 30.62 0.31 -2.46 16 14 C 0.09 2.73 6.38 86.86 0.55 3.29 16 15 C 0.17 6.07 3.13 46.38 0.15 6.22 16 16 H 0.06 2.26 8.04 -2.38 -0.02 2.24 16 17 N -0.72 -32.92 5.28 -316.39 -1.67 -34.59 16 18 C -0.24 -12.29 9.98 84.03 0.84 -11.45 16 19 H 0.08 3.85 7.83 -2.91 -0.02 3.83 16 20 C -0.07 -3.69 5.50 84.86 0.47 -3.23 16 21 N -0.97 -56.16 13.06 21.65 0.28 -55.88 16 22 Si 0.97 43.62 29.55 68.60 2.03 45.64 16 23 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 24 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 25 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 26 H 0.05 1.52 8.14 -2.39 -0.02 1.51 16 27 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 28 H 0.06 1.53 8.08 -2.39 -0.02 1.51 16 29 H 0.06 1.84 8.14 -2.39 -0.02 1.83 16 30 H 0.07 1.97 7.78 -2.39 -0.02 1.95 16 31 H 0.11 2.14 7.85 -2.38 -0.02 2.12 16 32 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.06 1.34 8.10 -2.39 -0.02 1.33 16 34 H 0.06 1.37 8.10 -2.39 -0.02 1.35 16 35 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.07 1.12 7.88 -2.39 -0.02 1.10 16 37 H 0.10 1.71 8.08 -2.38 -0.02 1.70 16 38 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.10 1.39 8.03 -2.39 -0.02 1.37 16 41 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.08 2.39 7.48 -2.38 -0.02 2.37 16 43 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 44 H 0.38 18.73 7.71 -92.71 -0.71 18.02 16 45 H 0.25 14.30 8.31 -92.70 -0.77 13.53 16 Total: -1.00 -61.67 365.86 3.02 -58.66 By element: Atomic # 1 Polarization: 32.80 SS G_CDS: 0.23 Total: 33.03 kcal Atomic # 6 Polarization: -8.90 SS G_CDS: 4.89 Total: -4.01 kcal Atomic # 7 Polarization: -107.72 SS G_CDS: -4.09 Total: -111.81 kcal Atomic # 8 Polarization: -21.46 SS G_CDS: -0.05 Total: -21.51 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.64 kcal Total: -61.67 3.02 -58.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001215367806.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.125 kcal (2) G-P(sol) polarization free energy of solvation -61.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds